Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1137

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthupB and DVU1135 are separated by 13 nucleotidesDVU1135 and DVU1136 are separated by 17 nucleotidesDVU1136 and DVU1137 are separated by 1 nucleotidesDVU1137 and DVU1138 are separated by 2 nucleotidesDVU1138 and DVU1139 overlap by 8 nucleotides DVU1134: hupB - DNA-binding protein HU, beta subunit (TIGR), at 1,233,044 to 1,233,331 hupB DVU1135: DVU1135 - conserved domain protein (TIGR), at 1,233,345 to 1,233,584 DVU1135 DVU1136: DVU1136 - host-nuclease inhibitor protein Gam, putative (TIGR), at 1,233,602 to 1,234,114 DVU1136 DVU1137: DVU1137 - hypothetical protein (TIGR), at 1,234,116 to 1,234,304 DVU1137 DVU1138: DVU1138 - hypothetical protein (TIGR), at 1,234,307 to 1,234,939 DVU1138 DVU1139: DVU1139 - bacteriophage DNA transposition B protein, putative (TIGR), at 1,234,932 to 1,235,669 DVU1139 Position (kb) 1234 1235Strain fitness (log2 ratio) -2 -1 0 1 2at 1233.121 kb on - strand, within hupBat 1233.201 kb on + strand, within hupBat 1233.209 kb on - strand, within hupBat 1233.229 kb on + strand, within hupBat 1233.236 kb on - strand, within hupBat 1233.246 kb on - strand, within hupBat 1233.259 kb on - strand, within hupBat 1233.278 kb on - strand, within hupBat 1233.299 kb on - strand, within hupBat 1233.304 kb on - strandat 1233.304 kb on - strandat 1233.315 kb on + strandat 1233.483 kb on + strand, within DVU1135at 1233.514 kb on + strand, within DVU1135at 1233.538 kb on + strand, within DVU1135at 1233.564 kb on + strandat 1233.783 kb on + strand, within DVU1136at 1233.791 kb on - strand, within DVU1136at 1233.845 kb on + strand, within DVU1136at 1233.888 kb on + strand, within DVU1136at 1233.888 kb on + strand, within DVU1136at 1233.896 kb on - strand, within DVU1136at 1233.928 kb on + strand, within DVU1136at 1233.968 kb on + strand, within DVU1136at 1233.974 kb on + strand, within DVU1136at 1233.974 kb on + strand, within DVU1136at 1234.059 kb on + strand, within DVU1136at 1234.092 kb on + strandat 1234.109 kb on + strandat 1234.168 kb on - strand, within DVU1137at 1234.181 kb on - strand, within DVU1137at 1234.282 kb on + strand, within DVU1137at 1234.282 kb on + strand, within DVU1137at 1234.313 kb on - strandat 1234.313 kb on - strandat 1234.337 kb on - strandat 1234.352 kb on - strandat 1234.479 kb on - strand, within DVU1138at 1234.579 kb on - strand, within DVU1138at 1234.654 kb on - strand, within DVU1138at 1234.655 kb on + strand, within DVU1138at 1234.663 kb on - strand, within DVU1138at 1234.666 kb on + strand, within DVU1138at 1234.744 kb on + strand, within DVU1138at 1234.750 kb on + strand, within DVU1138at 1234.770 kb on + strand, within DVU1138at 1234.796 kb on - strand, within DVU1138at 1235.010 kb on + strand, within DVU1139at 1235.013 kb on - strand, within DVU1139at 1235.159 kb on - strand, within DVU1139at 1235.245 kb on + strand, within DVU1139at 1235.256 kb on + strand, within DVU1139at 1235.284 kb on - strand, within DVU1139at 1235.291 kb on - strand, within DVU1139

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,233,121 - hupB DVU1134 0.27 +0.5
1,233,201 + hupB DVU1134 0.55 -0.7
1,233,209 - hupB DVU1134 0.57 -0.3
1,233,229 + hupB DVU1134 0.64 -1.1
1,233,236 - hupB DVU1134 0.67 -0.5
1,233,246 - hupB DVU1134 0.70 -0.2
1,233,259 - hupB DVU1134 0.75 -0.3
1,233,278 - hupB DVU1134 0.81 +0.4
1,233,299 - hupB DVU1134 0.89 +0.1
1,233,304 - -0.7
1,233,304 - -0.3
1,233,315 + -0.9
1,233,483 + DVU1135 0.57 -0.3
1,233,514 + DVU1135 0.70 -0.4
1,233,538 + DVU1135 0.80 +1.3
1,233,564 + -0.1
1,233,783 + DVU1136 0.35 +0.3
1,233,791 - DVU1136 0.37 -1.2
1,233,845 + DVU1136 0.47 -0.2
1,233,888 + DVU1136 0.56 -0.5
1,233,888 + DVU1136 0.56 +0.3
1,233,896 - DVU1136 0.57 -0.2
1,233,928 + DVU1136 0.64 -0.5
1,233,968 + DVU1136 0.71 +0.1
1,233,974 + DVU1136 0.73 -0.0
1,233,974 + DVU1136 0.73 -0.3
1,234,059 + DVU1136 0.89 -0.3
1,234,092 + -1.6
1,234,109 + -0.1
1,234,168 - DVU1137 0.28 +0.5
1,234,181 - DVU1137 0.34 +0.5
1,234,282 + DVU1137 0.88 +0.7
1,234,282 + DVU1137 0.88 +0.2
1,234,313 - -0.8
1,234,313 - -0.5
1,234,337 - -0.2
1,234,352 - -0.7
1,234,479 - DVU1138 0.27 -0.7
1,234,579 - DVU1138 0.43 -0.6
1,234,654 - DVU1138 0.55 -2.3
1,234,655 + DVU1138 0.55 +0.1
1,234,663 - DVU1138 0.56 -0.5
1,234,666 + DVU1138 0.57 -0.5
1,234,744 + DVU1138 0.69 -1.7
1,234,750 + DVU1138 0.70 -0.9
1,234,770 + DVU1138 0.73 +0.2
1,234,796 - DVU1138 0.77 -1.4
1,235,010 + DVU1139 0.11 -0.7
1,235,013 - DVU1139 0.11 -1.6
1,235,159 - DVU1139 0.31 +0.1
1,235,245 + DVU1139 0.42 -0.3
1,235,256 + DVU1139 0.44 -0.7
1,235,284 - DVU1139 0.48 -0.6
1,235,291 - DVU1139 0.49 +2.5

Or see this region's nucleotide sequence