Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1089

Experiment: MoLS4 with L-Cysteine 5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1087 and DVU1088 are separated by 46 nucleotidesDVU1088 and alaS are separated by 379 nucleotidesalaS and recA are separated by 78 nucleotides DVU1087: DVU1087 - conserved hypothetical protein (TIGR), at 1,190,196 to 1,191,176 DVU1087 DVU1088: DVU1088 - hypothetical protein (TIGR), at 1,191,223 to 1,191,399 DVU1088 DVU1089: alaS - alanyl-tRNA synthetase (TIGR), at 1,191,779 to 1,194,418 alaS DVU1090: recA - recA protein (TIGR), at 1,194,497 to 1,195,570 recA Position (kb) 1191 1192 1193 1194 1195Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1190.915 kb on + strand, within DVU1087at 1190.938 kb on - strand, within DVU1087at 1190.985 kb on - strand, within DVU1087at 1191.028 kb on - strand, within DVU1087at 1191.083 kb on + strandat 1191.083 kb on + strandat 1191.109 kb on + strandat 1191.112 kb on - strandat 1191.117 kb on - strandat 1191.117 kb on - strandat 1191.284 kb on + strand, within DVU1088at 1191.402 kb on - strandat 1191.402 kb on - strandat 1191.402 kb on - strandat 1191.427 kb on + strandat 1191.435 kb on - strandat 1191.446 kb on - strandat 1191.472 kb on + strandat 1191.480 kb on - strandat 1191.514 kb on - strandat 1191.665 kb on + strandat 1194.429 kb on + strandat 1194.430 kb on - strandat 1194.445 kb on - strandat 1194.447 kb on + strandat 1194.455 kb on - strandat 1194.556 kb on + strandat 1194.666 kb on - strand, within recAat 1194.697 kb on - strand, within recAat 1194.803 kb on - strand, within recAat 1194.865 kb on - strand, within recA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient
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1,190,915 + DVU1087 0.73 -0.5
1,190,938 - DVU1087 0.76 -0.0
1,190,985 - DVU1087 0.80 -0.1
1,191,028 - DVU1087 0.85 -0.1
1,191,083 + -0.6
1,191,083 + -0.6
1,191,109 + -0.3
1,191,112 - -1.1
1,191,117 - +0.7
1,191,117 - -0.5
1,191,284 + DVU1088 0.34 -0.0
1,191,402 - -1.9
1,191,402 - +0.3
1,191,402 - -0.6
1,191,427 + -0.2
1,191,435 - -0.2
1,191,446 - +0.1
1,191,472 + -0.4
1,191,480 - -0.0
1,191,514 - -0.4
1,191,665 + -0.2
1,194,429 + -0.2
1,194,430 - -0.1
1,194,445 - +1.9
1,194,447 + +0.9
1,194,455 - +0.3
1,194,556 + -1.5
1,194,666 - recA DVU1090 0.16 -2.8
1,194,697 - recA DVU1090 0.19 -3.2
1,194,803 - recA DVU1090 0.28 -0.1
1,194,865 - recA DVU1090 0.34 +0.5

Or see this region's nucleotide sequence