Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0861 and DVU0862 are separated by 159 nucleotides DVU0862 and DVU0863 are separated by 10 nucleotides
DVU0861: DVU0861 - glycosyl transferase, group 1 family protein (TIGR), at 952,490 to 953,608
DVU0861
DVU0862: DVU0862 - flagellar protein FliS/hypothetical protein, fusion (TIGR), at 953,768 to 954,673
DVU0862
DVU0863: DVU0863 - flagellar hook-associated protein 2, putative (TIGR), at 954,684 to 956,411
DVU0863
Position (kb) 953
954
955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 952.892 kb on + strand, within DVU0861 at 953.075 kb on - strand, within DVU0861 at 953.124 kb on + strand, within DVU0861 at 953.124 kb on + strand, within DVU0861 at 953.126 kb on + strand, within DVU0861 at 953.129 kb on + strand, within DVU0861 at 953.134 kb on - strand, within DVU0861 at 953.134 kb on - strand, within DVU0861 at 953.134 kb on - strand, within DVU0861 at 953.137 kb on - strand, within DVU0861 at 953.198 kb on - strand, within DVU0861 at 953.226 kb on - strand, within DVU0861 at 953.343 kb on + strand, within DVU0861 at 953.346 kb on - strand, within DVU0861 at 953.352 kb on - strand, within DVU0861 at 953.468 kb on + strand, within DVU0861 at 953.509 kb on - strand at 953.510 kb on + strand at 953.643 kb on - strand at 953.655 kb on + strand at 953.660 kb on + strand at 953.663 kb on - strand at 953.677 kb on - strand at 953.685 kb on - strand at 953.702 kb on - strand at 953.726 kb on + strand at 953.739 kb on + strand at 953.753 kb on - strand at 953.753 kb on - strand at 953.753 kb on - strand at 953.760 kb on + strand at 953.763 kb on - strand at 953.782 kb on + strand at 953.896 kb on + strand, within DVU0862 at 953.913 kb on - strand, within DVU0862 at 953.945 kb on - strand, within DVU0862 at 954.068 kb on + strand, within DVU0862 at 954.109 kb on + strand, within DVU0862 at 954.353 kb on - strand, within DVU0862 at 954.376 kb on + strand, within DVU0862 at 954.402 kb on - strand, within DVU0862 at 954.407 kb on - strand, within DVU0862 at 954.407 kb on - strand, within DVU0862 at 954.558 kb on - strand, within DVU0862 at 954.613 kb on - strand at 954.630 kb on + strand at 954.642 kb on + strand at 954.650 kb on - strand at 954.650 kb on - strand at 954.683 kb on - strand at 954.683 kb on - strand at 954.701 kb on + strand at 954.709 kb on - strand at 954.709 kb on - strand at 954.734 kb on + strand at 954.749 kb on + strand at 954.896 kb on + strand, within DVU0863 at 954.928 kb on + strand, within DVU0863 at 954.933 kb on + strand, within DVU0863 at 954.933 kb on + strand, within DVU0863 at 954.936 kb on - strand, within DVU0863 at 954.936 kb on - strand, within DVU0863 at 954.936 kb on - strand, within DVU0863 at 954.938 kb on + strand, within DVU0863 at 954.984 kb on - strand, within DVU0863 at 955.000 kb on + strand, within DVU0863 at 955.075 kb on + strand, within DVU0863 at 955.141 kb on + strand, within DVU0863 at 955.147 kb on + strand, within DVU0863 at 955.155 kb on - strand, within DVU0863 at 955.198 kb on + strand, within DVU0863 at 955.233 kb on + strand, within DVU0863 at 955.249 kb on + strand, within DVU0863 at 955.266 kb on + strand, within DVU0863 at 955.293 kb on - strand, within DVU0863 at 955.293 kb on - strand, within DVU0863 at 955.428 kb on + strand, within DVU0863 at 955.449 kb on + strand, within DVU0863 at 955.533 kb on - strand, within DVU0863 at 955.626 kb on - strand, within DVU0863
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 952,892 + DVU0861 0.36 +0.1 953,075 - DVU0861 0.52 +0.6 953,124 + DVU0861 0.57 +0.4 953,124 + DVU0861 0.57 +0.4 953,126 + DVU0861 0.57 -0.8 953,129 + DVU0861 0.57 +0.5 953,134 - DVU0861 0.58 +0.1 953,134 - DVU0861 0.58 +0.2 953,134 - DVU0861 0.58 -0.0 953,137 - DVU0861 0.58 -0.1 953,198 - DVU0861 0.63 +0.5 953,226 - DVU0861 0.66 -0.0 953,343 + DVU0861 0.76 -1.2 953,346 - DVU0861 0.76 -1.0 953,352 - DVU0861 0.77 -1.6 953,468 + DVU0861 0.87 -0.6 953,509 - +0.9 953,510 + +0.3 953,643 - -0.2 953,655 + -0.1 953,660 + -0.0 953,663 - -1.3 953,677 - -1.4 953,685 - -1.2 953,702 - +0.0 953,726 + -3.6 953,739 + -0.3 953,753 - +0.6 953,753 - -0.2 953,753 - +1.8 953,760 + -0.1 953,763 - -0.3 953,782 + +0.4 953,896 + DVU0862 0.14 +0.6 953,913 - DVU0862 0.16 -0.2 953,945 - DVU0862 0.20 -0.3 954,068 + DVU0862 0.33 +0.2 954,109 + DVU0862 0.38 +0.4 954,353 - DVU0862 0.65 +0.3 954,376 + DVU0862 0.67 -0.1 954,402 - DVU0862 0.70 +0.4 954,407 - DVU0862 0.71 +0.6 954,407 - DVU0862 0.71 -1.6 954,558 - DVU0862 0.87 +1.8 954,613 - -0.0 954,630 + +0.7 954,642 + -0.4 954,650 - +0.3 954,650 - +0.4 954,683 - -0.2 954,683 - -0.5 954,701 + +0.8 954,709 - +0.7 954,709 - -0.2 954,734 + -0.6 954,749 + +0.7 954,896 + DVU0863 0.12 +0.4 954,928 + DVU0863 0.14 -1.1 954,933 + DVU0863 0.14 +3.0 954,933 + DVU0863 0.14 +0.0 954,936 - DVU0863 0.15 -0.7 954,936 - DVU0863 0.15 -0.4 954,936 - DVU0863 0.15 -1.7 954,938 + DVU0863 0.15 +0.8 954,984 - DVU0863 0.17 -1.1 955,000 + DVU0863 0.18 +0.7 955,075 + DVU0863 0.23 -1.5 955,141 + DVU0863 0.26 +0.5 955,147 + DVU0863 0.27 +0.2 955,155 - DVU0863 0.27 +0.5 955,198 + DVU0863 0.30 -0.6 955,233 + DVU0863 0.32 -0.4 955,249 + DVU0863 0.33 -1.6 955,266 + DVU0863 0.34 -0.4 955,293 - DVU0863 0.35 -0.2 955,293 - DVU0863 0.35 +0.1 955,428 + DVU0863 0.43 +0.1 955,449 + DVU0863 0.44 -0.1 955,533 - DVU0863 0.49 -0.4 955,626 - DVU0863 0.55 -2.6
Or see this region's nucleotide sequence