Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0711 and DVU0712 are separated by 366 nucleotides DVU0712 and livH are separated by 77 nucleotides livH and livM overlap by 4 nucleotides
DVU0711: DVU0711 - hypothetical protein (TIGR), at 790,673 to 791,314
DVU0711
DVU0712: DVU0712 - amino acid ABC transporter, periplasmic-binding protein (TIGR), at 791,681 to 792,811
DVU0712
DVU0713: livH - branched-chain amino acid ABC transporter, permease protein (TIGR), at 792,889 to 793,794
livH
DVU0714: livM - branched-chain amino acid ABC transporter, permease protein (TIGR), at 793,791 to 794,744
livM
Position (kb) 791
792
793 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 790.699 kb on - strand at 790.699 kb on - strand at 790.701 kb on - strand at 790.781 kb on - strand, within DVU0711 at 790.808 kb on + strand, within DVU0711 at 790.808 kb on + strand, within DVU0711 at 790.816 kb on - strand, within DVU0711 at 790.820 kb on + strand, within DVU0711 at 790.855 kb on + strand, within DVU0711 at 790.858 kb on - strand, within DVU0711 at 790.878 kb on - strand, within DVU0711 at 790.938 kb on - strand, within DVU0711 at 791.015 kb on + strand, within DVU0711 at 791.035 kb on - strand, within DVU0711 at 791.035 kb on - strand, within DVU0711 at 791.197 kb on - strand, within DVU0711 at 791.205 kb on + strand, within DVU0711 at 791.260 kb on + strand at 791.316 kb on - strand at 791.321 kb on + strand at 791.327 kb on + strand at 791.332 kb on + strand at 791.354 kb on + strand at 791.359 kb on + strand at 791.359 kb on + strand at 791.359 kb on + strand at 791.367 kb on - strand at 791.367 kb on - strand at 791.422 kb on - strand at 791.464 kb on - strand at 791.631 kb on + strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.636 kb on + strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.644 kb on - strand at 791.654 kb on - strand at 791.654 kb on - strand at 791.658 kb on + strand at 791.690 kb on + strand at 791.805 kb on + strand, within DVU0712 at 791.810 kb on + strand, within DVU0712 at 791.810 kb on + strand, within DVU0712 at 791.818 kb on - strand, within DVU0712 at 791.850 kb on - strand, within DVU0712 at 791.852 kb on - strand, within DVU0712 at 791.933 kb on - strand, within DVU0712 at 791.933 kb on - strand, within DVU0712 at 792.016 kb on + strand, within DVU0712 at 792.113 kb on - strand, within DVU0712 at 792.154 kb on + strand, within DVU0712 at 792.223 kb on + strand, within DVU0712 at 792.223 kb on + strand, within DVU0712 at 792.231 kb on - strand, within DVU0712 at 792.287 kb on - strand, within DVU0712 at 792.353 kb on + strand, within DVU0712 at 792.353 kb on + strand, within DVU0712 at 792.363 kb on - strand, within DVU0712 at 792.451 kb on + strand, within DVU0712 at 792.538 kb on + strand, within DVU0712 at 792.540 kb on - strand, within DVU0712 at 792.560 kb on + strand, within DVU0712 at 792.577 kb on + strand, within DVU0712 at 792.577 kb on + strand, within DVU0712 at 792.577 kb on + strand, within DVU0712 at 792.594 kb on - strand, within DVU0712 at 792.599 kb on - strand, within DVU0712 at 792.599 kb on - strand, within DVU0712 at 792.604 kb on - strand, within DVU0712 at 792.628 kb on - strand, within DVU0712 at 792.660 kb on - strand, within DVU0712 at 792.716 kb on + strand at 792.765 kb on + strand at 792.805 kb on + strand at 792.813 kb on - strand at 792.833 kb on + strand at 792.833 kb on + strand at 792.841 kb on - strand at 792.841 kb on - strand at 792.841 kb on - strand at 792.878 kb on - strand at 792.957 kb on + strand at 792.969 kb on + strand at 793.020 kb on - strand, within livH at 793.083 kb on - strand, within livH at 793.101 kb on + strand, within livH at 793.109 kb on - strand, within livH at 793.195 kb on + strand, within livH at 793.203 kb on - strand, within livH at 793.248 kb on - strand, within livH at 793.258 kb on + strand, within livH at 793.263 kb on + strand, within livH at 793.263 kb on + strand, within livH at 793.263 kb on + strand, within livH at 793.308 kb on - strand, within livH at 793.347 kb on + strand, within livH at 793.352 kb on + strand, within livH at 793.363 kb on - strand, within livH at 793.429 kb on + strand, within livH at 793.448 kb on - strand, within livH at 793.452 kb on + strand, within livH at 793.491 kb on - strand, within livH at 793.502 kb on + strand, within livH at 793.520 kb on - strand, within livH at 793.545 kb on - strand, within livH at 793.576 kb on + strand, within livH at 793.657 kb on - strand, within livH at 793.687 kb on - strand, within livH at 793.697 kb on - strand, within livH at 793.755 kb on + strand at 793.762 kb on - strand at 793.795 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 790,699 - -1.3 790,699 - -0.7 790,701 - -0.1 790,781 - DVU0711 0.17 -1.5 790,808 + DVU0711 0.21 -0.7 790,808 + DVU0711 0.21 -0.2 790,816 - DVU0711 0.22 -0.0 790,820 + DVU0711 0.23 +0.6 790,855 + DVU0711 0.28 +0.1 790,858 - DVU0711 0.29 -1.0 790,878 - DVU0711 0.32 -0.4 790,938 - DVU0711 0.41 -1.5 791,015 + DVU0711 0.53 -0.8 791,035 - DVU0711 0.56 -0.1 791,035 - DVU0711 0.56 +1.4 791,197 - DVU0711 0.82 -1.4 791,205 + DVU0711 0.83 -0.4 791,260 + -0.4 791,316 - -0.5 791,321 + -0.5 791,327 + +1.4 791,332 + +0.8 791,354 + -0.9 791,359 + -0.5 791,359 + -1.4 791,359 + -0.7 791,367 - -1.3 791,367 - -0.2 791,422 - -0.2 791,464 - -1.4 791,631 + -0.8 791,636 + -1.8 791,636 + -0.2 791,636 + +0.7 791,636 + -0.6 791,644 - +0.7 791,644 - -1.2 791,644 - -0.2 791,654 - +0.6 791,654 - +1.3 791,658 + +0.1 791,690 + +0.7 791,805 + DVU0712 0.11 +0.4 791,810 + DVU0712 0.11 +2.1 791,810 + DVU0712 0.11 +1.5 791,818 - DVU0712 0.12 +2.4 791,850 - DVU0712 0.15 +2.2 791,852 - DVU0712 0.15 +2.5 791,933 - DVU0712 0.22 +1.4 791,933 - DVU0712 0.22 +2.9 792,016 + DVU0712 0.30 +1.7 792,113 - DVU0712 0.38 +3.4 792,154 + DVU0712 0.42 +0.1 792,223 + DVU0712 0.48 +1.4 792,223 + DVU0712 0.48 +1.7 792,231 - DVU0712 0.49 +2.2 792,287 - DVU0712 0.54 +1.5 792,353 + DVU0712 0.59 +2.7 792,353 + DVU0712 0.59 +2.2 792,363 - DVU0712 0.60 +0.9 792,451 + DVU0712 0.68 +2.1 792,538 + DVU0712 0.76 +3.1 792,540 - DVU0712 0.76 +1.8 792,560 + DVU0712 0.78 +1.9 792,577 + DVU0712 0.79 +2.2 792,577 + DVU0712 0.79 +2.3 792,577 + DVU0712 0.79 +1.7 792,594 - DVU0712 0.81 +1.8 792,599 - DVU0712 0.81 +0.8 792,599 - DVU0712 0.81 +3.4 792,604 - DVU0712 0.82 +2.5 792,628 - DVU0712 0.84 +1.9 792,660 - DVU0712 0.87 +2.1 792,716 + +3.0 792,765 + +2.2 792,805 + +2.5 792,813 - -0.0 792,833 + +1.2 792,833 + +1.1 792,841 - +1.9 792,841 - +2.6 792,841 - +2.0 792,878 - +1.0 792,957 + +1.8 792,969 + +1.4 793,020 - livH DVU0713 0.14 +2.8 793,083 - livH DVU0713 0.21 +2.4 793,101 + livH DVU0713 0.23 +2.4 793,109 - livH DVU0713 0.24 +1.8 793,195 + livH DVU0713 0.34 +0.4 793,203 - livH DVU0713 0.35 -0.6 793,248 - livH DVU0713 0.40 +2.4 793,258 + livH DVU0713 0.41 -0.4 793,263 + livH DVU0713 0.41 +3.0 793,263 + livH DVU0713 0.41 +3.4 793,263 + livH DVU0713 0.41 +2.4 793,308 - livH DVU0713 0.46 +1.1 793,347 + livH DVU0713 0.51 +5.4 793,352 + livH DVU0713 0.51 +2.0 793,363 - livH DVU0713 0.52 +1.2 793,429 + livH DVU0713 0.60 +2.6 793,448 - livH DVU0713 0.62 +1.7 793,452 + livH DVU0713 0.62 +2.0 793,491 - livH DVU0713 0.66 +2.2 793,502 + livH DVU0713 0.68 +1.7 793,520 - livH DVU0713 0.70 +0.5 793,545 - livH DVU0713 0.72 +1.0 793,576 + livH DVU0713 0.76 +1.4 793,657 - livH DVU0713 0.85 +2.1 793,687 - livH DVU0713 0.88 +1.5 793,697 - livH DVU0713 0.89 +1.1 793,755 + +1.1 793,762 - +0.3 793,795 - +2.2
Or see this region's nucleotide sequence