Experiment: MoLS4 with L-Cysteine 5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0688 and rnhA are separated by 9 nucleotides rnhA and DORF29743 are separated by 166 nucleotides DORF29743 and DVU0690 are separated by 75 nucleotides DVU0690 and DVU0691 are separated by 14 nucleotides
DVU0688: DVU0688 - hypothetical protein (TIGR), at 763,007 to 763,507
DVU0688
DVU0689: rnhA - ribonuclease HI (TIGR), at 763,517 to 763,987
rnhA
DORF29743: DORF29743 - no description, at 764,154 to 764,273
DORF29743
DVU0690: DVU0690 - conserved hypothetical protein (TIGR), at 764,349 to 765,020
DVU0690
DVU0691: DVU0691 - membrane protein, putative (TIGR), at 765,035 to 765,994
DVU0691
Position (kb) 764
765
766 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 763.374 kb on - strand, within DVU0688 at 763.417 kb on - strand, within DVU0688 at 763.530 kb on + strand at 763.727 kb on + strand, within rnhA at 763.786 kb on - strand, within rnhA at 764.084 kb on + strand at 764.087 kb on - strand at 764.168 kb on + strand, within DORF29743 at 764.230 kb on - strand, within DORF29743 at 764.347 kb on + strand at 764.351 kb on + strand at 764.396 kb on - strand at 764.538 kb on + strand, within DVU0690 at 764.707 kb on + strand, within DVU0690 at 764.730 kb on + strand, within DVU0690 at 764.738 kb on - strand, within DVU0690 at 764.825 kb on - strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.837 kb on + strand, within DVU0690 at 764.845 kb on - strand, within DVU0690 at 764.857 kb on + strand, within DVU0690 at 764.993 kb on + strand at 765.071 kb on - strand at 765.074 kb on + strand at 765.100 kb on + strand at 765.339 kb on + strand, within DVU0691 at 765.380 kb on + strand, within DVU0691 at 765.380 kb on + strand, within DVU0691 at 765.380 kb on + strand, within DVU0691 at 765.388 kb on - strand, within DVU0691 at 765.388 kb on - strand, within DVU0691 at 765.400 kb on + strand, within DVU0691 at 765.451 kb on - strand, within DVU0691 at 765.498 kb on - strand, within DVU0691 at 765.550 kb on - strand, within DVU0691 at 765.593 kb on - strand, within DVU0691 at 765.669 kb on - strand, within DVU0691 at 765.678 kb on + strand, within DVU0691 at 765.710 kb on + strand, within DVU0691 at 765.743 kb on - strand, within DVU0691 at 765.753 kb on - strand, within DVU0691 at 765.769 kb on - strand, within DVU0691 at 765.791 kb on + strand, within DVU0691 at 765.853 kb on - strand, within DVU0691 at 765.915 kb on + strand at 765.915 kb on + strand at 765.923 kb on - strand at 765.933 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Cysteine 5mM as nutrient remove 763,374 - DVU0688 0.73 +0.3 763,417 - DVU0688 0.82 -0.1 763,530 + -0.1 763,727 + rnhA DVU0689 0.45 -1.8 763,786 - rnhA DVU0689 0.57 +1.4 764,084 + -2.2 764,087 - +0.8 764,168 + DORF29743 0.12 +0.1 764,230 - DORF29743 0.63 -1.5 764,347 + +0.4 764,351 + -0.2 764,396 - -0.2 764,538 + DVU0690 0.28 +1.0 764,707 + DVU0690 0.53 +0.8 764,730 + DVU0690 0.57 +1.0 764,738 - DVU0690 0.58 +1.8 764,825 - DVU0690 0.71 +0.9 764,837 + DVU0690 0.73 +0.5 764,837 + DVU0690 0.73 +0.2 764,837 + DVU0690 0.73 +1.4 764,845 - DVU0690 0.74 +1.2 764,857 + DVU0690 0.76 -0.0 764,993 + +1.3 765,071 - -0.2 765,074 + +0.4 765,100 + -1.7 765,339 + DVU0691 0.32 +0.3 765,380 + DVU0691 0.36 -0.8 765,380 + DVU0691 0.36 -0.7 765,380 + DVU0691 0.36 -0.6 765,388 - DVU0691 0.37 +0.2 765,388 - DVU0691 0.37 -4.0 765,400 + DVU0691 0.38 -0.8 765,451 - DVU0691 0.43 +0.5 765,498 - DVU0691 0.48 -0.7 765,550 - DVU0691 0.54 -1.1 765,593 - DVU0691 0.58 -0.2 765,669 - DVU0691 0.66 -0.2 765,678 + DVU0691 0.67 -0.9 765,710 + DVU0691 0.70 -0.4 765,743 - DVU0691 0.74 -0.0 765,753 - DVU0691 0.75 +0.4 765,769 - DVU0691 0.76 +0.0 765,791 + DVU0691 0.79 -1.0 765,853 - DVU0691 0.85 +0.4 765,915 + -0.6 765,915 + -0.0 765,923 - +1.4 765,933 + -1.0
Or see this region's nucleotide sequence