Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22355

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
5,025,849	+		PFLU_RS22340	0.88	+1.3
5,025,849	+		PFLU_RS22340	0.88	-3.1
5,025,849	+		PFLU_RS22340	0.88	+0.1
5,025,849	+		PFLU_RS22340	0.88	+0.2
5,025,849	+		PFLU_RS22340	0.88	-0.3
5,025,849	+		PFLU_RS22340	0.88	+0.5
5,025,849	+		PFLU_RS22340	0.88	-1.4
5,025,849	+		PFLU_RS22340	0.88	-0.2
5,025,849	+		PFLU_RS22340	0.88	-1.3
5,025,849	+		PFLU_RS22340	0.88	-0.1
5,025,849	+		PFLU_RS22340	0.88	-0.1
5,025,849	+		PFLU_RS22340	0.88	+0.9
5,025,850	-		PFLU_RS22340	0.88	-0.9
5,025,850	-		PFLU_RS22340	0.88	-1.2
5,025,850	-		PFLU_RS22340	0.88	-3.3
5,025,850	-		PFLU_RS22340	0.88	-1.9
5,025,888	+				-0.9
5,025,888	+				-1.8
5,025,888	+				+0.3
5,025,888	+				+0.1
5,025,888	+				+3.3
5,025,888	+				-0.3
5,025,888	+				+1.3
5,025,889	-				-0.1
5,025,889	-				+1.2
5,025,889	-				-1.6
5,025,889	-				+2.9
5,025,889	-				-1.0
5,025,889	-				-0.7
5,025,890	+				-2.2
5,025,890	+				-0.5
5,025,890	+				-2.2
5,025,891	-				+0.3
5,025,891	-				-0.6
5,025,891	-				+0.4
5,025,945	+				+1.6
5,025,945	+				+0.3
5,025,945	+				+0.4
5,025,946	-				-1.8
5,025,946	-				+0.8
5,025,946	-				+1.3
5,025,946	-				-0.3
5,026,041	+				-1.2
5,026,041	+				-1.2
5,026,042	-				-0.1
5,026,042	-				-0.6
5,026,042	-				+1.2
5,026,042	-				+0.2
5,026,042	-				+1.3
5,026,054	+				-1.0
5,026,202	+		PFLU_RS22345	0.29	-1.5
5,026,202	+		PFLU_RS22345	0.29	-3.2
5,026,202	+		PFLU_RS22345	0.29	-1.8
5,026,202	+		PFLU_RS22345	0.29	-0.3
5,026,202	+		PFLU_RS22345	0.29	-0.5
5,026,203	-		PFLU_RS22345	0.29	-0.8
5,026,203	-		PFLU_RS22345	0.29	-2.3
5,026,203	-		PFLU_RS22345	0.29	-3.5
5,026,203	-		PFLU_RS22345	0.29	-1.4
5,026,271	+		PFLU_RS22345	0.40	-2.3
5,026,280	+		PFLU_RS22345	0.41	+0.3
5,026,281	-		PFLU_RS22345	0.42	-1.9
5,026,400	+		PFLU_RS22345	0.61	-0.1
5,026,400	+		PFLU_RS22345	0.61	-1.5
5,026,400	+		PFLU_RS22345	0.61	-1.9
5,026,400	+		PFLU_RS22345	0.61	-0.0
5,026,400	+		PFLU_RS22345	0.61	+1.2
5,026,400	+		PFLU_RS22345	0.61	-1.9
5,026,401	-		PFLU_RS22345	0.61	-1.2
5,026,401	-		PFLU_RS22345	0.61	-0.5
5,026,401	-		PFLU_RS22345	0.61	-1.8
5,026,401	-		PFLU_RS22345	0.61	-3.1
5,026,401	-		PFLU_RS22345	0.61	-0.0
5,026,443	-		PFLU_RS22345	0.68	+0.0
5,026,523	+		PFLU_RS22345	0.81	-1.9
5,026,523	+		PFLU_RS22345	0.81	-0.7
5,026,524	-		PFLU_RS22345	0.81	-1.0
5,026,524	-		PFLU_RS22345	0.81	+0.3
5,026,524	-		PFLU_RS22345	0.81	+0.6
5,026,524	-		PFLU_RS22345	0.81	-2.5
5,026,595	+				-0.0
5,026,596	-				+0.9
5,026,596	-				+1.3
5,026,810	+				-1.7
5,026,810	+				-0.7
5,026,810	+				-2.7
5,026,810	+				+1.9
5,026,811	-				-1.7
5,026,811	-				-1.1
5,026,811	-				+1.4
5,026,811	-				-1.0
5,026,811	-				+0.7
5,026,811	-				+1.1
5,026,811	-				+0.8
5,026,811	-				+0.3
5,026,816	+				+0.1
5,026,816	+				-0.2
5,026,817	-				+0.6
5,026,817	-				+1.5
5,026,817	-				-0.2
5,026,817	-				-3.4
5,026,830	+				-0.3
5,026,830	+				+0.7
5,026,830	+				-1.3
5,026,830	+				-1.0
5,026,830	+				-2.4
5,026,831	-				-2.3
5,026,831	-				-1.2
5,026,831	-				-0.1
5,026,831	-				+1.7
5,026,831	-				+1.6
5,026,831	-				+1.2
5,026,831	-				+1.1
5,026,831	-				+0.2
5,026,831	-				-1.6
5,026,846	+				+0.1
5,026,846	+				-0.3
5,026,846	+				-1.9
5,026,846	+				-1.8
5,026,846	+				-2.6
5,026,846	+				-2.2
5,026,846	+				+1.2
5,026,847	-				-1.9
5,026,847	-				-1.9
5,026,847	-				+1.8
5,026,972	+		PFLU_RS22355	0.15	+1.4
5,026,972	+		PFLU_RS22355	0.15	-0.5
5,026,972	+		PFLU_RS22355	0.15	-2.2
5,026,973	-		PFLU_RS22355	0.15	+0.7
5,026,973	-		PFLU_RS22355	0.15	+1.1
5,026,973	-		PFLU_RS22355	0.15	-1.6
5,027,039	-		PFLU_RS22355	0.22	-0.3
5,027,039	-		PFLU_RS22355	0.22	-1.9
5,027,089	+		PFLU_RS22355	0.27	-1.3
5,027,089	+		PFLU_RS22355	0.27	-0.4
5,027,089	+		PFLU_RS22355	0.27	+1.3
5,027,090	-		PFLU_RS22355	0.27	-0.6
5,027,090	-		PFLU_RS22355	0.27	-1.4
5,027,090	-		PFLU_RS22355	0.27	-2.3
5,027,090	-		PFLU_RS22355	0.27	-0.3
5,027,095	+		PFLU_RS22355	0.28	-0.4
5,027,095	+		PFLU_RS22355	0.28	-1.2
5,027,095	+		PFLU_RS22355	0.28	-0.5
5,027,095	+		PFLU_RS22355	0.28	+0.7
5,027,095	+		PFLU_RS22355	0.28	-0.3
5,027,095	+		PFLU_RS22355	0.28	-0.4
5,027,095	+		PFLU_RS22355	0.28	+0.9
5,027,095	+		PFLU_RS22355	0.28	-2.1
5,027,095	+		PFLU_RS22355	0.28	-0.1
5,027,096	-		PFLU_RS22355	0.28	+1.7
5,027,096	-		PFLU_RS22355	0.28	-0.2
5,027,096	-		PFLU_RS22355	0.28	+0.3
5,027,096	-		PFLU_RS22355	0.28	+1.3
5,027,096	-		PFLU_RS22355	0.28	-0.9
5,027,096	-		PFLU_RS22355	0.28	-0.9
5,027,191	-		PFLU_RS22355	0.37	-1.6
5,027,330	-		PFLU_RS22355	0.52	-0.5
5,027,644	+		PFLU_RS22355	0.84	-1.4
5,027,644	+		PFLU_RS22355	0.84	+0.7
5,027,644	+		PFLU_RS22355	0.84	-0.5
5,027,645	-		PFLU_RS22355	0.84	-1.9
5,027,645	-		PFLU_RS22355	0.84	-2.2
5,027,645	-		PFLU_RS22355	0.84	-1.3
5,027,645	-		PFLU_RS22355	0.84	-0.6
5,027,645	-		PFLU_RS22355	0.84	-2.7
5,027,755	+				-2.4
5,027,755	+				+0.5
5,027,755	+				-0.7
5,027,755	+				-0.3
5,027,755	+				-1.8
5,027,755	+				-1.7
5,027,755	+				+0.6
5,027,755	+				-0.6
5,027,756	-				-1.2
5,027,756	-				-1.4
5,027,756	-				-1.1
5,027,756	-				-3.4
5,027,756	-				+1.1
5,027,756	-				-2.7
5,027,756	-				-0.6
5,027,756	-				-1.0
5,027,756	-				+1.7
5,027,756	-				+0.5
5,027,761	+				-2.0
5,027,761	+				-0.0
5,027,761	+				-2.8
5,027,762	-				-2.2
5,027,762	-				-1.3
5,027,762	-				-0.2
5,027,781	+				-2.7
5,027,781	+				-1.9
5,027,781	+				-2.8
5,027,781	+				-0.4
5,027,782	-				-1.0
5,027,782	-				-2.9
5,027,782	-				-1.1
5,027,800	+				-1.4
5,027,800	+				+0.1
5,027,800	+				+1.3
5,027,800	+				-0.0
5,027,801	-				+1.3
5,027,801	-				+1.5
5,027,816	-				+1.1
5,027,816	-				+1.1
5,027,816	-				+1.0
5,027,816	-				-1.3
5,027,959	+				-0.3
5,027,959	+				-0.1
5,027,959	+				-2.5
5,027,959	+				-1.4
5,027,959	+				-2.4
5,027,959	+				+0.4
5,027,959	+				+1.7
5,027,960	-				+1.5
5,027,960	-				-0.7
5,027,960	-				+1.6
5,027,960	-				-1.2
5,027,960	-				+1.1
5,027,960	-				-0.8
5,027,989	+				+1.3
5,027,989	+				-0.9
5,027,989	+				-1.0
5,027,990	-				-0.1
5,027,990	-				+0.1
5,028,040	+				+0.7
5,028,040	+				+1.0
5,028,040	+				+0.2
5,028,040	+				+0.5
5,028,040	+				-0.3
5,028,040	+				+0.5
5,028,041	-				-1.8
5,028,041	-				-2.2
5,028,041	-				-2.5
5,028,041	-				+1.2
5,028,041	-				+0.6
5,028,041	-				-1.4
5,028,041	-				-1.0
5,028,041	-				-1.2
5,028,041	-				+1.0
5,028,041	-				-0.5
5,028,043	+				-0.7
5,028,054	+				-0.3
5,028,055	-				+0.7
5,028,055	-				+1.6
5,028,060	+				+1.1
5,028,060	+				-1.7
5,028,060	+				-1.1
5,028,060	+				+1.3
5,028,061	-				+1.6
5,028,061	-				-2.2
5,028,061	-				-0.9
5,028,061	-				-0.6
5,028,061	-				-1.4
5,028,101	+				-0.9
5,028,102	-				-1.9
5,028,102	-				-0.5
5,028,102	-				-2.3
5,028,102	-				+2.3
5,028,102	-				+1.4
5,028,102	-				-1.3
5,028,154	+				-2.8
5,028,160	+				-0.9
5,028,160	+				-0.5
5,028,160	+				+0.6
5,028,160	+				+0.4
5,028,160	+				+0.3
5,028,160	+				-1.9
5,028,160	+				-1.2
5,028,160	+				-1.2
5,028,161	-				-0.9
5,028,161	-				-0.2
5,028,161	-				-2.2
5,028,161	-				+1.0
5,028,161	-				+1.2
5,028,161	-				+0.7
5,028,161	-				-0.5
5,028,161	-				-1.9
5,028,161	-				-1.6
5,028,161	-				-1.9
5,028,161	-				-1.9
5,028,161	-				-1.2
5,028,206	+				-0.4
5,028,207	-				-0.3
5,028,243	+				-1.8
5,028,244	-				-1.0
5,028,244	-				-1.3
5,028,273	-				-0.9
5,028,312	+		PFLU_RS22360	0.12	-0.3
5,028,312	+		PFLU_RS22360	0.12	-0.7
5,028,313	-		PFLU_RS22360	0.12	-0.7
5,028,313	-		PFLU_RS22360	0.12	+0.4
5,028,377	+		PFLU_RS22360	0.17	+0.5
5,028,377	+		PFLU_RS22360	0.17	-1.4
5,028,377	+		PFLU_RS22360	0.17	+4.1
5,028,377	+		PFLU_RS22360	0.17	+0.8
5,028,377	+		PFLU_RS22360	0.17	-0.3
5,028,377	+		PFLU_RS22360	0.17	-1.9
5,028,377	+		PFLU_RS22360	0.17	-0.7
5,028,377	+		PFLU_RS22360	0.17	+0.1
5,028,377	+		PFLU_RS22360	0.17	-1.2
5,028,377	+		PFLU_RS22360	0.17	-2.2
5,028,378	-		PFLU_RS22360	0.17	+1.7
5,028,378	-		PFLU_RS22360	0.17	+0.3
5,028,378	-		PFLU_RS22360	0.17	-0.3
5,028,378	-		PFLU_RS22360	0.17	-2.9
5,028,378	-		PFLU_RS22360	0.17	-1.3
5,028,378	-		PFLU_RS22360	0.17	-1.2
5,028,378	-		PFLU_RS22360	0.17	-0.1
5,028,378	-		PFLU_RS22360	0.17	-2.0
5,028,378	-		PFLU_RS22360	0.17	+1.4
5,028,378	-		PFLU_RS22360	0.17	-0.0
5,028,378	-		PFLU_RS22360	0.17	-0.0
5,028,378	-		PFLU_RS22360	0.17	-1.0
5,028,378	-		PFLU_RS22360	0.17	-1.8
5,028,386	+		PFLU_RS22360	0.17	-2.5
5,028,386	+		PFLU_RS22360	0.17	-1.5
5,028,386	+		PFLU_RS22360	0.17	-1.4
5,028,387	-		PFLU_RS22360	0.17	-1.3
5,028,435	-		PFLU_RS22360	0.21	-1.8
5,028,435	-		PFLU_RS22360	0.21	+1.3
5,028,467	+		PFLU_RS22360	0.23	-1.6
5,028,468	-		PFLU_RS22360	0.23	-1.6
5,028,478	-		PFLU_RS22360	0.24	-1.2
5,028,478	-		PFLU_RS22360	0.24	+0.7
5,028,478	-		PFLU_RS22360	0.24	-2.7
5,028,478	-		PFLU_RS22360	0.24	-1.3
5,028,478	-		PFLU_RS22360	0.24	-0.0
5,028,501	+		PFLU_RS22360	0.25	-0.0
5,028,501	+		PFLU_RS22360	0.25	-1.6
5,028,501	+		PFLU_RS22360	0.25	-0.8
5,028,502	-		PFLU_RS22360	0.25	-1.4
5,028,503	+		PFLU_RS22360	0.25	-0.9
5,028,503	+		PFLU_RS22360	0.25	-1.5
5,028,503	+		PFLU_RS22360	0.25	-0.3
5,028,503	+		PFLU_RS22360	0.25	-0.3
5,028,503	+		PFLU_RS22360	0.25	-1.3
5,028,503	+		PFLU_RS22360	0.25	-1.4
5,028,503	+		PFLU_RS22360	0.25	-0.2
5,028,504	-		PFLU_RS22360	0.25	-3.6
5,028,504	-		PFLU_RS22360	0.25	-2.3
5,028,504	-		PFLU_RS22360	0.25	-0.8
5,028,504	-		PFLU_RS22360	0.25	-0.3
5,028,504	-		PFLU_RS22360	0.25	-0.3
5,028,504	-		PFLU_RS22360	0.25	-0.7
5,028,504	-		PFLU_RS22360	0.25	-0.7
5,028,504	-		PFLU_RS22360	0.25	-1.0
5,028,504	-		PFLU_RS22360	0.25	-1.6
5,028,504	-		PFLU_RS22360	0.25	-1.3
5,028,520	+		PFLU_RS22360	0.27	-1.3
5,028,520	+		PFLU_RS22360	0.27	+0.3
5,028,521	-		PFLU_RS22360	0.27	+0.2
5,028,521	-		PFLU_RS22360	0.27	-2.0
5,028,750	+		PFLU_RS22360	0.43	-0.9
5,028,750	+		PFLU_RS22360	0.43	-0.0
5,028,751	-		PFLU_RS22360	0.43	-0.3
5,028,783	+		PFLU_RS22360	0.45	-1.2
5,028,783	+		PFLU_RS22360	0.45	-2.8
5,028,783	+		PFLU_RS22360	0.45	-0.9
5,028,783	+		PFLU_RS22360	0.45	+0.3
5,028,783	+		PFLU_RS22360	0.45	-0.4
5,028,783	+		PFLU_RS22360	0.45	-0.9
5,028,784	-		PFLU_RS22360	0.45	-1.0
5,028,784	-		PFLU_RS22360	0.45	-0.5
5,028,784	-		PFLU_RS22360	0.45	-1.6
5,028,784	-		PFLU_RS22360	0.45	-1.7
5,028,784	-		PFLU_RS22360	0.45	+0.1
5,028,784	-		PFLU_RS22360	0.45	-2.2