Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS10720

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
2,362,285	+		PFLU_RS10715	0.31	+2.1
2,362,285	+		PFLU_RS10715	0.31	+3.3
2,362,285	+		PFLU_RS10715	0.31	+3.1
2,362,285	+		PFLU_RS10715	0.31	+4.4
2,362,285	+		PFLU_RS10715	0.31	+4.9
2,362,285	+		PFLU_RS10715	0.31	+2.3
2,362,285	+		PFLU_RS10715	0.31	+1.7
2,362,286	-		PFLU_RS10715	0.31	+1.6
2,362,286	-		PFLU_RS10715	0.31	+3.1
2,362,286	-		PFLU_RS10715	0.31	-0.5
2,362,286	-		PFLU_RS10715	0.31	+1.5
2,362,485	+		PFLU_RS10715	0.58	+2.0
2,362,486	-		PFLU_RS10715	0.59	+1.7
2,362,534	-		PFLU_RS10715	0.65	+0.1
2,362,534	-		PFLU_RS10715	0.65	+2.3
2,362,540	+		PFLU_RS10715	0.66	+0.9
2,362,540	+		PFLU_RS10715	0.66	+0.4
2,362,540	+		PFLU_RS10715	0.66	+1.8
2,362,540	+		PFLU_RS10715	0.66	+2.1
2,362,540	+		PFLU_RS10715	0.66	+1.5
2,362,540	+		PFLU_RS10715	0.66	+1.9
2,362,540	+		PFLU_RS10715	0.66	+2.0
2,362,540	+		PFLU_RS10715	0.66	-0.7
2,362,540	+		PFLU_RS10715	0.66	+2.4
2,362,541	-		PFLU_RS10715	0.66	+1.4
2,362,541	-		PFLU_RS10715	0.66	+0.4
2,362,541	-		PFLU_RS10715	0.66	+0.1
2,362,541	-		PFLU_RS10715	0.66	+1.5
2,362,541	-		PFLU_RS10715	0.66	-1.6
2,362,541	-		PFLU_RS10715	0.66	+2.3
2,362,541	-		PFLU_RS10715	0.66	+2.1
2,362,541	-		PFLU_RS10715	0.66	+5.1
2,362,558	-		PFLU_RS10715	0.69	+1.1
2,362,558	-		PFLU_RS10715	0.69	-0.9
2,362,608	+		PFLU_RS10715	0.76	+2.7
2,362,608	+		PFLU_RS10715	0.76	+1.7
2,362,608	+		PFLU_RS10715	0.76	+1.1
2,362,608	+		PFLU_RS10715	0.76	-1.2
2,362,608	+		PFLU_RS10715	0.76	+2.8
2,362,608	+		PFLU_RS10715	0.76	+1.1
2,362,608	+		PFLU_RS10715	0.76	+0.7
2,362,608	+		PFLU_RS10715	0.76	+1.4
2,362,608	+		PFLU_RS10715	0.76	+0.3
2,362,608	+		PFLU_RS10715	0.76	+2.4
2,362,608	+		PFLU_RS10715	0.76	+2.1
2,362,608	+		PFLU_RS10715	0.76	+1.8
2,362,608	+		PFLU_RS10715	0.76	+1.1
2,362,608	+		PFLU_RS10715	0.76	+2.0
2,362,609	-		PFLU_RS10715	0.76	+0.8
2,362,609	-		PFLU_RS10715	0.76	+1.6
2,362,609	-		PFLU_RS10715	0.76	+0.9
2,362,609	-		PFLU_RS10715	0.76	+1.6
2,362,609	-		PFLU_RS10715	0.76	+0.5
2,362,609	-		PFLU_RS10715	0.76	+1.4
2,362,609	-		PFLU_RS10715	0.76	+1.2
2,362,609	-		PFLU_RS10715	0.76	+1.1
2,362,609	-		PFLU_RS10715	0.76	+1.4
2,362,609	-		PFLU_RS10715	0.76	-0.5
2,362,612	+		PFLU_RS10715	0.76	+2.7
2,362,613	-		PFLU_RS10715	0.76	+0.5
2,362,613	-		PFLU_RS10715	0.76	+1.7
2,362,664	+		PFLU_RS10715	0.83	-0.0
2,362,665	-		PFLU_RS10715	0.84	-1.5
2,362,665	-		PFLU_RS10715	0.84	-0.5
2,362,665	-		PFLU_RS10715	0.84	+3.3
2,362,737	+				+1.0
2,362,738	-				+1.7
2,362,738	-				-0.2
2,362,770	+				-0.2
2,362,774	-				+0.1
2,362,780	+				-1.5
2,362,781	-				+0.8
2,362,781	-				+1.4
2,362,781	-				+2.6
2,362,843	+				+1.7
2,362,848	+				+0.9
2,362,848	+				+1.2
2,362,848	+				+0.4
2,362,849	-				+1.3
2,362,849	-				+0.1
2,362,849	-				-0.9
2,362,849	-				+1.1
2,362,849	-				-1.0
2,362,859	+				+1.5
2,362,860	-				+0.5
2,362,875	-				-0.3
2,362,875	-				-0.1
2,362,875	-				+0.8
2,362,890	+				-1.8
2,362,891	-				+2.1
2,362,931	+				+0.1
2,362,931	+				+1.7
2,362,931	+				-0.9
2,362,932	-				+0.7
2,362,932	-				-1.6
2,362,932	-				+1.4
2,362,969	-				-0.7
2,363,009	-				-0.9
2,363,021	+				+0.8
2,363,021	+				-1.9
2,363,022	-				+1.5
2,363,022	-				+2.1
2,363,022	-				-0.6
2,363,022	-				+0.4
2,363,022	-				-1.5
2,363,022	-				+2.3
2,363,022	-				+2.7
2,363,025	+				-0.1
2,363,025	+				-0.5
2,363,025	+				+0.5
2,363,025	+				-1.3
2,363,025	+				+0.6
2,363,025	+				+1.0
2,363,025	+				+0.1
2,363,025	+				-1.7
2,363,025	+				-0.5
2,363,026	-				-0.0
2,363,026	-				+0.4
2,363,026	-				+0.5
2,363,026	-				-1.9
2,363,026	-				-1.2
2,363,026	-				-1.1
2,363,026	-				-1.0
2,363,026	-				+1.2
2,363,026	-				-0.2
2,363,039	+				-1.2
2,363,039	+				-1.5
2,363,039	+				-2.3
2,363,040	-				+2.6
2,363,040	-				+0.8
2,363,040	-				+1.4
2,363,040	-				+1.4
2,363,043	+				-0.0
2,363,043	+				-1.1
2,363,043	+				+0.5
2,363,043	+				-1.3
2,363,043	+				-0.3
2,363,043	+				+0.7
2,363,043	+				+1.1
2,363,043	+				+1.8
2,363,043	+				-0.3
2,363,043	+				-1.5
2,363,043	+				-0.2
2,363,043	+				-1.9
2,363,043	+				+0.1
2,363,043	+				-1.3
2,363,043	+				-1.2
2,363,043	+				+1.4
2,363,043	+				-1.3
2,363,043	+				+0.1
2,363,043	+				+1.2
2,363,043	+				-1.0
2,363,043	+				+0.4
2,363,044	-				-1.6
2,363,044	-				-1.9
2,363,044	-				+0.7
2,363,044	-				+0.1
2,363,044	-				+1.3
2,363,044	-				+1.0
2,363,044	-				-0.5
2,363,044	-				+1.5
2,363,044	-				+0.4
2,363,044	-				-0.5
2,363,044	-				-1.8
2,363,044	-				-1.8
2,363,044	-				-0.0
2,363,044	-				-1.6
2,363,044	-				+2.1
2,363,044	-				-0.9
2,363,044	-				+1.1
2,363,044	-				-1.3
2,363,044	-				+1.3
2,363,044	-				+1.4
2,363,044	-				-0.9
2,363,044	-				-0.5
2,363,044	-				-0.3
2,363,044	-				-0.0
2,363,044	-				-0.5
2,363,044	-				+2.7
2,363,044	-				+0.8
2,363,044	-				+0.5
2,363,044	-				+0.5
2,363,044	-				+2.1
2,363,044	-				+0.5
2,363,049	+				-1.9
2,363,049	+				+0.6
2,363,049	+				-0.9
2,363,049	+				+0.2
2,363,049	+				-1.8
2,363,072	+				-1.0
2,363,072	+				-0.5
2,363,072	+				-2.0
2,363,073	-				+2.3
2,363,073	-				-2.6
2,363,074	-				-0.5
2,363,086	+				+2.8
2,363,086	+				-0.1
2,363,087	-				+0.0
2,363,108	+				+0.7
2,363,108	+				+1.0
2,363,108	+				+0.4
2,363,108	+				+0.1
2,363,109	-				+0.5
2,363,109	-				+2.0
2,363,319	+		PFLU_RS10720	0.39	-1.0
2,363,319	+		PFLU_RS10720	0.39	-1.5
2,363,319	+		PFLU_RS10720	0.39	+0.8
2,363,320	-		PFLU_RS10720	0.39	+0.1
2,363,320	-		PFLU_RS10720	0.39	-2.2
2,363,434	-		PFLU_RS10720	0.58	+0.3
2,363,600	+		PFLU_RS10720	0.84	+0.0
2,363,601	-		PFLU_RS10720	0.84	-1.8
2,363,606	+		PFLU_RS10720	0.85	+0.5
2,363,606	+		PFLU_RS10720	0.85	-2.6
2,363,607	-		PFLU_RS10720	0.85	+2.1
2,363,607	-		PFLU_RS10720	0.85	-1.5
2,363,616	+		PFLU_RS10720	0.87	-0.6
2,363,616	+		PFLU_RS10720	0.87	+0.5
2,363,616	+		PFLU_RS10720	0.87	+0.2
2,363,617	-		PFLU_RS10720	0.87	+1.9
2,363,617	-		PFLU_RS10720	0.87	-1.0
2,363,617	-		PFLU_RS10720	0.87	-1.3
2,363,617	-		PFLU_RS10720	0.87	-1.8
2,363,793	-				+0.1
2,363,884	+				-0.1
2,363,910	+				+0.3
2,363,911	-				-2.7
2,363,911	-				-0.4
2,363,911	-				+0.4
2,363,964	+				-2.6
2,363,964	+				-1.1
2,363,965	-				-1.8
2,363,965	-				+1.2
2,363,965	-				-0.7
2,363,966	+				-0.5
2,363,966	+				-0.2
2,363,966	+				+0.8
2,363,966	+				-2.9
2,363,966	+				+2.1
2,363,966	+				-0.2
2,363,966	+				-1.7
2,363,966	+				-1.0
2,363,967	-				+0.9
2,363,967	-				-1.9
2,363,967	-				-0.5
2,363,967	-				+0.5
2,363,967	-				-0.2
2,363,967	-				-0.9
2,363,967	-				-0.6
2,363,967	-				-1.9
2,363,967	-				+1.1
2,363,967	-				-1.2
2,363,967	-				-2.1
2,363,967	-				-1.7
2,363,967	-				-0.7
2,363,967	-				-0.3
2,363,967	-				+1.7
2,363,967	-				-1.0
2,363,985	-				+0.5
2,363,995	+				-1.0
2,363,995	+				+0.8
2,363,995	+				+0.3
2,363,995	+				+0.7
2,363,995	+				-0.8
2,363,995	+				-2.0
2,363,995	+				-1.8
2,363,995	+				+0.2
2,363,995	+				-0.5
2,363,996	-				-1.8
2,363,996	-				+0.2
2,363,996	-				-0.2
2,363,996	-				-0.9
2,363,996	-				+0.9
2,363,996	-				+1.4
2,363,996	-				+0.4
2,363,999	+				+1.7
2,363,999	+				+2.1
2,363,999	+				-0.6
2,364,000	-				-0.1
2,364,008	+				+0.6
2,364,015	+				+1.4
2,364,088	-		PFLU_RS10725	0.11	+0.1
2,364,112	+		PFLU_RS10725	0.11	-1.3
2,364,113	-		PFLU_RS10725	0.11	-1.6
2,364,113	-		PFLU_RS10725	0.11	+0.2
2,364,126	+		PFLU_RS10725	0.12	-1.2
2,364,216	+		PFLU_RS10725	0.14	+2.0
2,364,216	+		PFLU_RS10725	0.14	+2.6
2,364,217	-		PFLU_RS10725	0.14	-0.9
2,364,217	-		PFLU_RS10725	0.14	+0.5
2,364,222	+		PFLU_RS10725	0.14	-1.3
2,364,222	+		PFLU_RS10725	0.14	-2.3
2,364,222	+		PFLU_RS10725	0.14	+1.0
2,364,222	+		PFLU_RS10725	0.14	-0.2
2,364,223	-		PFLU_RS10725	0.14	+2.6
2,364,223	-		PFLU_RS10725	0.14	-0.5
2,364,223	-		PFLU_RS10725	0.14	+1.6
2,364,223	-		PFLU_RS10725	0.14	-0.6
2,364,223	-		PFLU_RS10725	0.14	-0.7
2,364,223	-		PFLU_RS10725	0.14	+0.1
2,364,223	-		PFLU_RS10725	0.14	-1.0
2,364,223	-		PFLU_RS10725	0.14	+0.7
2,364,223	-		PFLU_RS10725	0.14	+0.1
2,364,223	-		PFLU_RS10725	0.14	-1.3
2,364,223	-		PFLU_RS10725	0.14	+0.9
2,364,224	+		PFLU_RS10725	0.14	-2.2
2,364,224	+		PFLU_RS10725	0.14	+0.4
2,364,224	+		PFLU_RS10725	0.14	-0.5
2,364,224	+		PFLU_RS10725	0.14	-1.0
2,364,224	+		PFLU_RS10725	0.14	+0.1
2,364,224	+		PFLU_RS10725	0.14	+0.0
2,364,224	+		PFLU_RS10725	0.14	-0.0
2,364,224	+		PFLU_RS10725	0.14	-0.0
2,364,225	-		PFLU_RS10725	0.14	-0.5
2,364,225	-		PFLU_RS10725	0.14	-0.2
2,364,225	-		PFLU_RS10725	0.14	-0.5
2,364,225	-		PFLU_RS10725	0.14	-1.0
2,364,225	-		PFLU_RS10725	0.14	-1.6
2,364,225	-		PFLU_RS10725	0.14	-1.6
2,364,225	-		PFLU_RS10725	0.14	+1.9
2,364,225	-		PFLU_RS10725	0.14	+0.5
2,364,225	-		PFLU_RS10725	0.14	+2.1
2,364,225	-		PFLU_RS10725	0.14	-1.0
2,364,253	-		PFLU_RS10725	0.15	-1.6
2,364,274	+		PFLU_RS10725	0.16	+1.0
2,364,274	+		PFLU_RS10725	0.16	-1.5
2,364,274	+		PFLU_RS10725	0.16	+0.8
2,364,274	+		PFLU_RS10725	0.16	-0.7
2,364,274	+		PFLU_RS10725	0.16	-0.5
2,364,274	+		PFLU_RS10725	0.16	-0.6
2,364,275	-		PFLU_RS10725	0.16	+0.3
2,364,275	-		PFLU_RS10725	0.16	-2.5
2,364,275	-		PFLU_RS10725	0.16	-0.9
2,364,275	-		PFLU_RS10725	0.16	-2.0
2,364,275	-		PFLU_RS10725	0.16	+0.5
2,364,275	-		PFLU_RS10725	0.16	-0.7
2,364,276	+		PFLU_RS10725	0.16	+2.1
2,364,277	-		PFLU_RS10725	0.16	-2.1
2,364,277	-		PFLU_RS10725	0.16	-0.2
2,364,277	-		PFLU_RS10725	0.16	-1.0
2,364,277	-		PFLU_RS10725	0.16	-1.5
2,364,307	+		PFLU_RS10725	0.17	-1.3
2,364,330	+		PFLU_RS10725	0.17	-0.1
2,364,358	-		PFLU_RS10725	0.18	+1.9
2,364,383	+		PFLU_RS10725	0.19	-0.5
2,364,392	+		PFLU_RS10725	0.19	-0.5
2,364,393	-		PFLU_RS10725	0.19	-1.5