Experiment: MOLS with alpha-ketoglutaric 2.5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dctM and DVU0706 overlap by 4 nucleotides DVU0706 and dctP are separated by 84 nucleotides dctP and DVU0710 are separated by 982 nucleotides
DVU0705: dctM - TRAP dicarboxylate transporter, putative (TIGR), at 785,091 to 786,374
dctM
DVU0706: DVU0706 - membrane protein, putative (TIGR), at 786,371 to 786,841
DVU0706
DVU0707: dctP - TRAP dicarboxylate family transporter (TIGR), at 786,926 to 787,942
dctP
DVU0710: DVU0710 - competence protein comM, putative (TIGR), at 788,925 to 790,589
DVU0710
Position (kb) 786
787
788 Strain fitness (log2 ratio) -2
-1
0
1
2 at 785.980 kb on + strand, within dctM at 786.081 kb on + strand, within dctM at 786.107 kb on - strand, within dctM at 786.135 kb on + strand, within dctM at 786.171 kb on + strand, within dctM at 786.171 kb on + strand, within dctM at 786.318 kb on - strand at 786.336 kb on - strand at 786.378 kb on - strand at 786.398 kb on + strand at 786.406 kb on - strand at 786.450 kb on + strand, within DVU0706 at 786.566 kb on - strand, within DVU0706 at 786.733 kb on - strand, within DVU0706 at 786.780 kb on + strand, within DVU0706 at 786.780 kb on + strand, within DVU0706 at 786.788 kb on - strand, within DVU0706 at 786.788 kb on - strand, within DVU0706 at 786.972 kb on + strand at 787.026 kb on + strand at 787.034 kb on - strand, within dctP at 787.049 kb on - strand, within dctP at 787.099 kb on + strand, within dctP at 787.205 kb on - strand, within dctP at 787.212 kb on - strand, within dctP at 787.226 kb on - strand, within dctP at 787.226 kb on - strand, within dctP at 787.244 kb on + strand, within dctP at 787.285 kb on - strand, within dctP at 787.310 kb on - strand, within dctP at 787.310 kb on - strand, within dctP at 787.509 kb on + strand, within dctP at 787.548 kb on + strand, within dctP at 787.575 kb on + strand, within dctP at 787.600 kb on - strand, within dctP at 787.690 kb on - strand, within dctP at 787.690 kb on - strand, within dctP at 787.713 kb on + strand, within dctP at 787.790 kb on + strand, within dctP at 787.836 kb on + strand, within dctP at 787.874 kb on - strand at 787.879 kb on - strand at 788.023 kb on - strand at 788.030 kb on + strand at 788.120 kb on + strand at 788.161 kb on - strand at 788.422 kb on + strand at 788.468 kb on - strand at 788.523 kb on - strand at 788.532 kb on - strand at 788.614 kb on + strand at 788.622 kb on - strand at 788.662 kb on - strand at 788.701 kb on + strand at 788.745 kb on + strand at 788.745 kb on + strand at 788.753 kb on - strand at 788.766 kb on + strand at 788.774 kb on - strand at 788.805 kb on + strand at 788.906 kb on + strand at 788.939 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOLS with alpha-ketoglutaric 2.5mM as nutrient remove 785,980 + dctM DVU0705 0.69 -0.7 786,081 + dctM DVU0705 0.77 +0.1 786,107 - dctM DVU0705 0.79 -1.7 786,135 + dctM DVU0705 0.81 -0.5 786,171 + dctM DVU0705 0.84 +0.3 786,171 + dctM DVU0705 0.84 +0.4 786,318 - +0.4 786,336 - +0.1 786,378 - -2.1 786,398 + -0.2 786,406 - -0.3 786,450 + DVU0706 0.17 +0.7 786,566 - DVU0706 0.41 -1.2 786,733 - DVU0706 0.77 -1.0 786,780 + DVU0706 0.87 -0.2 786,780 + DVU0706 0.87 -0.2 786,788 - DVU0706 0.89 -0.5 786,788 - DVU0706 0.89 -0.5 786,972 + +0.7 787,026 + +0.4 787,034 - dctP DVU0707 0.11 +0.4 787,049 - dctP DVU0707 0.12 -0.2 787,099 + dctP DVU0707 0.17 -0.6 787,205 - dctP DVU0707 0.27 +0.3 787,212 - dctP DVU0707 0.28 +0.2 787,226 - dctP DVU0707 0.29 -0.3 787,226 - dctP DVU0707 0.29 -1.3 787,244 + dctP DVU0707 0.31 +0.9 787,285 - dctP DVU0707 0.35 +0.3 787,310 - dctP DVU0707 0.38 -0.2 787,310 - dctP DVU0707 0.38 +0.1 787,509 + dctP DVU0707 0.57 +1.0 787,548 + dctP DVU0707 0.61 -1.1 787,575 + dctP DVU0707 0.64 -0.3 787,600 - dctP DVU0707 0.66 -0.1 787,690 - dctP DVU0707 0.75 +1.2 787,690 - dctP DVU0707 0.75 +0.2 787,713 + dctP DVU0707 0.77 +0.2 787,790 + dctP DVU0707 0.85 -2.2 787,836 + dctP DVU0707 0.89 +0.6 787,874 - -0.9 787,879 - -0.2 788,023 - +0.2 788,030 + -0.9 788,120 + +0.7 788,161 - +2.7 788,422 + -0.1 788,468 - -0.1 788,523 - -1.6 788,532 - -0.3 788,614 + -2.5 788,622 - -0.0 788,662 - -1.2 788,701 + +0.1 788,745 + -0.2 788,745 + -0.1 788,753 - +2.2 788,766 + -0.1 788,774 - +0.4 788,805 + +0.4 788,906 + -0.9 788,939 + -0.2
Or see this region's nucleotide sequence