Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15455

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
3,462,337	-				-1.7
3,462,380	+				+3.7
3,462,380	+				+2.6
3,462,380	+				-0.3
3,462,380	+				-0.5
3,462,380	+				-0.4
3,462,381	-				+1.3
3,462,578	-		PFLU_RS15450	0.34	-1.1
3,462,701	-		PFLU_RS15450	0.55	+0.3
3,462,707	+		PFLU_RS15450	0.56	+2.8
3,462,708	-		PFLU_RS15450	0.56	-1.0
3,462,766	+		PFLU_RS15450	0.66	+0.1
3,462,766	+		PFLU_RS15450	0.66	+0.3
3,462,767	-		PFLU_RS15450	0.66	-1.7
3,462,767	-		PFLU_RS15450	0.66	-2.8
3,462,795	+		PFLU_RS15450	0.71	-0.2
3,462,795	+		PFLU_RS15450	0.71	+0.2
3,462,795	+		PFLU_RS15450	0.71	-0.3
3,462,796	-		PFLU_RS15450	0.71	-0.5
3,462,796	-		PFLU_RS15450	0.71	+0.8
3,462,796	-		PFLU_RS15450	0.71	-1.8
3,462,796	-		PFLU_RS15450	0.71	-0.2
3,462,796	-		PFLU_RS15450	0.71	+1.8
3,462,796	-		PFLU_RS15450	0.71	-3.1
3,462,796	-		PFLU_RS15450	0.71	-0.5
3,462,903	+		PFLU_RS15450	0.90	+0.8
3,462,903	+		PFLU_RS15450	0.90	+0.8
3,462,904	-		PFLU_RS15450	0.90	-1.7
3,462,904	-		PFLU_RS15450	0.90	-0.8
3,462,904	-		PFLU_RS15450	0.90	-0.4
3,462,904	-		PFLU_RS15450	0.90	-0.8
3,462,925	-				+1.8
3,462,943	+				-0.3
3,462,960	+				-1.8
3,462,960	+				-1.5
3,462,960	+				-1.8
3,462,960	+				+0.2
3,462,960	+				-0.8
3,462,960	+				-0.8
3,462,960	+				+1.0
3,462,960	+				-1.0
3,462,960	+				+0.8
3,462,961	-				+0.8
3,462,961	-				-0.5
3,462,961	-				+1.0
3,462,961	-				-2.1
3,462,961	-				-0.2
3,462,961	-				-1.6
3,462,961	-				+1.2
3,463,016	+				+0.8
3,463,016	+				-1.7
3,463,017	-				-2.3
3,463,017	-				-0.9
3,463,017	-				+3.0
3,463,023	+				-1.1
3,463,023	+				+2.4
3,463,023	+				-1.2
3,463,023	+				+0.2
3,463,023	+				-3.1
3,463,023	+				+0.7
3,463,055	-				-0.1
3,463,073	+				+1.8
3,463,073	+				+0.4
3,463,073	+				+0.4
3,463,073	+				+3.9
3,463,073	+				+1.2
3,463,073	+				+0.2
3,463,073	+				+2.0
3,463,073	+				-1.9
3,463,073	+				-1.5
3,463,073	+				-0.5
3,463,073	+				-0.7
3,463,073	+				-1.0
3,463,074	-				+1.0
3,463,074	-				+1.0
3,463,074	-				+0.2
3,463,074	-				+1.1
3,463,074	-				+0.6
3,463,074	-				-1.7
3,463,074	-				-0.0
3,463,074	-				+1.8
3,463,074	-				+0.2
3,463,074	-				-0.7
3,463,146	-				+0.5
3,463,184	-				+2.8
3,463,207	+				+0.1
3,463,207	+				-1.6
3,463,207	+				-0.2
3,463,208	-				-0.2
3,463,208	-				-1.4
3,463,210	-				+0.8
3,463,264	+				-0.2
3,463,264	+				-0.5
3,463,264	+				+1.8
3,463,264	+				+0.7
3,463,264	+				+0.2
3,463,265	-				-1.0
3,463,265	-				+0.4
3,463,265	-				+0.6
3,463,265	-				+2.9
3,463,265	-				-1.4
3,463,265	-				+0.8
3,463,265	-				+0.8
3,463,271	+				+0.2
3,463,271	+				-2.2
3,463,271	+				-1.0
3,463,340	+				+0.1
3,463,340	+				-1.2
3,463,340	+				-0.8
3,463,340	+				-1.0
3,463,340	+				+0.2
3,463,340	+				+0.0
3,463,340	+				-1.5
3,463,341	-				+0.9
3,463,341	-				+1.6
3,463,341	-				-0.5
3,463,341	-				-1.6
3,463,341	-				-1.8
3,463,341	-				-0.8
3,463,341	-				-1.2
3,463,341	-				+0.2
3,463,341	-				+2.3
3,463,341	-				-2.3
3,463,341	-				-0.9
3,463,341	-				-0.9
3,463,341	-				+0.5
3,463,374	+		PFLU_RS15455	0.14	-0.5
3,463,550	+		PFLU_RS15455	0.38	+0.7
3,463,550	+		PFLU_RS15455	0.38	+0.2
3,463,550	+		PFLU_RS15455	0.38	+0.4
3,463,550	+		PFLU_RS15455	0.38	+1.8
3,463,550	+		PFLU_RS15455	0.38	-2.1
3,463,550	+		PFLU_RS15455	0.38	+1.4
3,463,550	+		PFLU_RS15455	0.38	+0.5
3,463,550	+		PFLU_RS15455	0.38	+0.8
3,463,551	-		PFLU_RS15455	0.38	-1.1
3,463,551	-		PFLU_RS15455	0.38	-1.1
3,463,551	-		PFLU_RS15455	0.38	-0.2
3,463,551	-		PFLU_RS15455	0.38	+1.2
3,463,551	-		PFLU_RS15455	0.38	-0.7
3,463,551	-		PFLU_RS15455	0.38	+1.3
3,463,551	-		PFLU_RS15455	0.38	+0.6
3,463,551	-		PFLU_RS15455	0.38	+0.9
3,463,551	-		PFLU_RS15455	0.38	+2.0
3,463,596	+		PFLU_RS15455	0.44	+2.1
3,463,662	-		PFLU_RS15455	0.53	-0.9
3,463,840	+		PFLU_RS15455	0.77	-0.2
3,463,996	-				-2.4
3,464,006	+				+0.1
3,464,006	+				-1.2
3,464,006	+				+0.6
3,464,006	+				+1.4
3,464,006	+				+2.8
3,464,006	+				-0.7
3,464,007	-				-1.2
3,464,007	-				+1.8
3,464,007	-				-0.2
3,464,007	-				+0.6
3,464,072	+				-1.2
3,464,072	+				+0.6
3,464,072	+				-1.7
3,464,073	-				+2.3
3,464,073	-				-2.0
3,464,073	-				+1.3
3,464,074	+				-3.5
3,464,074	+				+0.0
3,464,074	+				+0.4
3,464,074	+				+2.1
3,464,074	+				-0.2
3,464,074	+				+2.8
3,464,074	+				+1.5
3,464,074	+				+1.8
3,464,074	+				+0.6
3,464,074	+				-1.5
3,464,074	+				-1.2
3,464,074	+				+2.4
3,464,074	+				+0.2
3,464,074	+				-1.5
3,464,074	+				+1.8
3,464,075	-				+0.2
3,464,075	-				-0.5
3,464,075	-				-0.4
3,464,075	-				+0.8
3,464,075	-				-0.8
3,464,086	+				-2.4
3,464,086	+				+1.5
3,464,086	+				-0.5
3,464,086	+				-0.5
3,464,086	+				+0.3
3,464,086	+				+0.1
3,464,086	+				+0.2
3,464,086	+				+0.5
3,464,086	+				+1.8
3,464,086	+				-1.2
3,464,086	+				+0.0
3,464,086	+				+2.8
3,464,086	+				+1.0
3,464,087	-				-0.1
3,464,087	-				+0.6
3,464,087	-				-0.9
3,464,087	-				-0.1
3,464,087	-				+1.2
3,464,087	-				-1.0
3,464,087	-				+1.4
3,464,087	-				-1.9
3,464,087	-				-0.5
3,464,087	-				-0.1
3,464,087	-				+0.7
3,464,087	-				+1.1
3,464,087	-				+1.4
3,464,111	-				+1.2
3,464,111	-				+1.3
3,464,135	-				-1.4
3,464,204	+		PFLU_RS15460	0.11	+1.8
3,464,204	+		PFLU_RS15460	0.11	-1.2
3,464,204	+		PFLU_RS15460	0.11	+0.9
3,464,204	+		PFLU_RS15460	0.11	-1.0
3,464,258	+		PFLU_RS15460	0.16	+1.1
3,464,258	+		PFLU_RS15460	0.16	+1.8
3,464,259	-		PFLU_RS15460	0.16	-0.2
3,464,275	+		PFLU_RS15460	0.17	+0.8
3,464,275	+		PFLU_RS15460	0.17	+0.2
3,464,275	+		PFLU_RS15460	0.17	+0.9
3,464,275	+		PFLU_RS15460	0.17	+0.1
3,464,276	-		PFLU_RS15460	0.18	+0.1
3,464,276	-		PFLU_RS15460	0.18	+0.9
3,464,276	-		PFLU_RS15460	0.18	-0.8
3,464,276	-		PFLU_RS15460	0.18	-1.2
3,464,276	-		PFLU_RS15460	0.18	+1.6
3,464,276	-		PFLU_RS15460	0.18	+1.0
3,464,276	-		PFLU_RS15460	0.18	+0.3
3,464,276	-		PFLU_RS15460	0.18	-2.1
3,464,344	-		PFLU_RS15460	0.24	+1.2
3,464,344	-		PFLU_RS15460	0.24	+0.1
3,464,344	-		PFLU_RS15460	0.24	+1.7
3,464,344	-		PFLU_RS15460	0.24	+0.8
3,464,386	+		PFLU_RS15460	0.28	+1.8
3,464,387	-		PFLU_RS15460	0.28	+0.0
3,464,428	+		PFLU_RS15460	0.31	-2.1
3,464,428	+		PFLU_RS15460	0.31	-1.2
3,464,428	+		PFLU_RS15460	0.31	+1.4
3,464,428	+		PFLU_RS15460	0.31	-1.5
3,464,428	+		PFLU_RS15460	0.31	+2.5
3,464,428	+		PFLU_RS15460	0.31	+2.9
3,464,428	+		PFLU_RS15460	0.31	-0.5
3,464,428	+		PFLU_RS15460	0.31	-0.8
3,464,428	+		PFLU_RS15460	0.31	-1.8
3,464,429	-		PFLU_RS15460	0.31	-0.4
3,464,429	-		PFLU_RS15460	0.31	+0.6
3,464,429	-		PFLU_RS15460	0.31	+1.7
3,464,429	-		PFLU_RS15460	0.31	-2.1
3,464,429	-		PFLU_RS15460	0.31	-0.9
3,464,429	-		PFLU_RS15460	0.31	-0.1
3,464,429	-		PFLU_RS15460	0.31	+2.8
3,464,429	-		PFLU_RS15460	0.31	-2.9
3,464,429	-		PFLU_RS15460	0.31	+1.6
3,464,429	-		PFLU_RS15460	0.31	+0.8
3,464,429	-		PFLU_RS15460	0.31	-1.8
3,464,429	-		PFLU_RS15460	0.31	-1.8
3,464,429	-		PFLU_RS15460	0.31	-0.5
3,464,429	-		PFLU_RS15460	0.31	+0.4
3,464,429	-		PFLU_RS15460	0.31	-0.8
3,464,429	-		PFLU_RS15460	0.31	+0.6
3,464,429	-		PFLU_RS15460	0.31	+1.4
3,464,632	+		PFLU_RS15460	0.50	+1.1
3,464,632	+		PFLU_RS15460	0.50	+1.0
3,464,632	+		PFLU_RS15460	0.50	+1.1
3,464,632	+		PFLU_RS15460	0.50	-2.9
3,464,633	-		PFLU_RS15460	0.50	-0.8
3,464,633	-		PFLU_RS15460	0.50	-1.0
3,464,633	-		PFLU_RS15460	0.50	+3.1
3,464,701	+		PFLU_RS15460	0.56	-2.3
3,464,701	+		PFLU_RS15460	0.56	+1.5
3,464,701	+		PFLU_RS15460	0.56	+0.8
3,464,702	-		PFLU_RS15460	0.56	-0.1
3,464,702	-		PFLU_RS15460	0.56	+1.8
3,464,702	-		PFLU_RS15460	0.56	-2.1
3,464,702	-		PFLU_RS15460	0.56	-2.1
3,464,777	+		PFLU_RS15460	0.63	+0.4
3,464,777	+		PFLU_RS15460	0.63	+0.5
3,464,777	+		PFLU_RS15460	0.63	-1.0
3,464,778	-		PFLU_RS15460	0.63	+1.5
3,464,778	-		PFLU_RS15460	0.63	+1.5
3,464,779	+		PFLU_RS15460	0.63	+1.5
3,464,779	+		PFLU_RS15460	0.63	-1.0
3,464,779	+		PFLU_RS15460	0.63	-1.2
3,464,779	+		PFLU_RS15460	0.63	+1.5
3,464,779	+		PFLU_RS15460	0.63	+0.3
3,464,779	+		PFLU_RS15460	0.63	+1.2
3,464,779	+		PFLU_RS15460	0.63	-0.2
3,464,779	+		PFLU_RS15460	0.63	-0.3
3,464,779	+		PFLU_RS15460	0.63	-0.2
3,464,779	+		PFLU_RS15460	0.63	+0.5
3,464,779	+		PFLU_RS15460	0.63	+1.8
3,464,779	+		PFLU_RS15460	0.63	-1.4
3,464,779	+		PFLU_RS15460	0.63	+0.6
3,464,779	+		PFLU_RS15460	0.63	-1.4
3,464,779	+		PFLU_RS15460	0.63	+0.2
3,464,779	+		PFLU_RS15460	0.63	+1.2
3,464,780	-		PFLU_RS15460	0.63	-1.3
3,464,780	-		PFLU_RS15460	0.63	+0.8
3,464,780	-		PFLU_RS15460	0.63	+0.8
3,464,780	-		PFLU_RS15460	0.63	-2.2
3,464,780	-		PFLU_RS15460	0.63	+0.8
3,464,780	-		PFLU_RS15460	0.63	-0.8
3,464,780	-		PFLU_RS15460	0.63	+1.6
3,464,780	-		PFLU_RS15460	0.63	-1.0
3,464,780	-		PFLU_RS15460	0.63	+2.7
3,464,780	-		PFLU_RS15460	0.63	-1.4
3,464,780	-		PFLU_RS15460	0.63	+0.8
3,464,780	-		PFLU_RS15460	0.63	-1.2
3,464,780	-		PFLU_RS15460	0.63	+1.8
3,464,780	-		PFLU_RS15460	0.63	+1.1
3,464,780	-		PFLU_RS15460	0.63	+0.5
3,464,780	-		PFLU_RS15460	0.63	-0.8
3,464,780	-		PFLU_RS15460	0.63	-1.4
3,464,871	+		PFLU_RS15460	0.71	+1.5
3,464,871	+		PFLU_RS15460	0.71	+1.1
3,464,872	-		PFLU_RS15460	0.72	+0.1
3,464,872	-		PFLU_RS15460	0.72	+1.3
3,464,872	-		PFLU_RS15460	0.72	-1.2
3,464,872	-		PFLU_RS15460	0.72	+3.4
3,464,872	-		PFLU_RS15460	0.72	+2.3
3,464,993	+		PFLU_RS15460	0.83	+1.1
3,464,994	-		PFLU_RS15460	0.83	+2.4