Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004760

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004759 and ABIE53_004760 are separated by 25 nucleotidesABIE53_004760 and ABIE53_004761 are separated by 100 nucleotides ABIE53_004759: ABIE53_004759 - 2-methylcitrate dehydratase, at 963,402 to 964,853 _004759 ABIE53_004760: ABIE53_004760 - hypothetical protein, at 964,879 to 965,382 _004760 ABIE53_004761: ABIE53_004761 - 2-methylcitrate synthase, at 965,483 to 966,652 _004761 Position (kb) 964 965 966Strain fitness (log2 ratio) -2 -1 0 1 2 3at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.028 kb on - strand, within ABIE53_004759at 964.082 kb on - strand, within ABIE53_004759at 964.082 kb on - strand, within ABIE53_004759at 964.082 kb on - strand, within ABIE53_004759at 964.082 kb on - strand, within ABIE53_004759at 964.082 kb on - strand, within ABIE53_004759at 964.118 kb on - strand, within ABIE53_004759at 964.223 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.339 kb on - strand, within ABIE53_004759at 964.383 kb on - strand, within ABIE53_004759at 964.383 kb on - strand, within ABIE53_004759at 964.694 kb on - strand, within ABIE53_004759at 964.790 kb on - strandat 964.881 kb on - strandat 964.881 kb on - strandat 964.881 kb on - strandat 964.881 kb on - strandat 965.085 kb on - strand, within ABIE53_004760at 965.085 kb on - strand, within ABIE53_004760at 965.085 kb on - strand, within ABIE53_004760at 965.085 kb on - strand, within ABIE53_004760at 965.085 kb on - strand, within ABIE53_004760at 965.396 kb on - strandat 965.396 kb on - strandat 965.400 kb on - strandat 965.410 kb on - strandat 965.417 kb on - strandat 965.485 kb on - strandat 965.509 kb on - strandat 965.509 kb on - strandat 965.533 kb on - strandat 965.658 kb on + strand, within ABIE53_004761at 965.659 kb on - strand, within ABIE53_004761at 965.659 kb on - strand, within ABIE53_004761at 965.659 kb on - strand, within ABIE53_004761at 965.995 kb on - strand, within ABIE53_004761at 965.995 kb on - strand, within ABIE53_004761at 965.995 kb on - strand, within ABIE53_004761at 965.995 kb on - strand, within ABIE53_004761at 965.995 kb on - strand, within ABIE53_004761at 965.995 kb on - strand, within ABIE53_004761at 965.995 kb on - strand, within ABIE53_004761at 966.201 kb on + strand, within ABIE53_004761at 966.202 kb on - strand, within ABIE53_004761

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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964,028 - ABIE53_004759 0.43 +0.7
964,028 - ABIE53_004759 0.43 -1.4
964,028 - ABIE53_004759 0.43 -0.8
964,028 - ABIE53_004759 0.43 +2.9
964,028 - ABIE53_004759 0.43 -0.2
964,028 - ABIE53_004759 0.43 -0.4
964,028 - ABIE53_004759 0.43 +0.7
964,028 - ABIE53_004759 0.43 -0.2
964,028 - ABIE53_004759 0.43 -1.1
964,082 - ABIE53_004759 0.47 -1.1
964,082 - ABIE53_004759 0.47 -0.8
964,082 - ABIE53_004759 0.47 -1.1
964,082 - ABIE53_004759 0.47 +0.2
964,082 - ABIE53_004759 0.47 +0.2
964,118 - ABIE53_004759 0.49 -0.5
964,223 - ABIE53_004759 0.57 -2.3
964,339 - ABIE53_004759 0.65 -1.0
964,339 - ABIE53_004759 0.65 +2.2
964,339 - ABIE53_004759 0.65 -0.4
964,339 - ABIE53_004759 0.65 +0.3
964,339 - ABIE53_004759 0.65 +0.5
964,339 - ABIE53_004759 0.65 -0.4
964,339 - ABIE53_004759 0.65 +2.7
964,339 - ABIE53_004759 0.65 +1.6
964,339 - ABIE53_004759 0.65 +0.2
964,339 - ABIE53_004759 0.65 -0.4
964,339 - ABIE53_004759 0.65 -0.8
964,339 - ABIE53_004759 0.65 -0.0
964,339 - ABIE53_004759 0.65 +0.6
964,339 - ABIE53_004759 0.65 -0.4
964,339 - ABIE53_004759 0.65 -2.2
964,339 - ABIE53_004759 0.65 +2.2
964,383 - ABIE53_004759 0.68 -1.0
964,383 - ABIE53_004759 0.68 +0.2
964,694 - ABIE53_004759 0.89 -1.6
964,790 - -2.7
964,881 - -0.5
964,881 - +0.3
964,881 - -1.3
964,881 - -2.5
965,085 - ABIE53_004760 0.41 -0.9
965,085 - ABIE53_004760 0.41 -2.2
965,085 - ABIE53_004760 0.41 -1.8
965,085 - ABIE53_004760 0.41 -0.4
965,085 - ABIE53_004760 0.41 -1.3
965,396 - -2.4
965,396 - +0.4
965,400 - -1.5
965,410 - -0.2
965,417 - +0.5
965,485 - -1.4
965,509 - +0.1
965,509 - -0.7
965,533 - -0.0
965,658 + ABIE53_004761 0.15 -0.8
965,659 - ABIE53_004761 0.15 -1.4
965,659 - ABIE53_004761 0.15 -0.7
965,659 - ABIE53_004761 0.15 -0.6
965,995 - ABIE53_004761 0.44 -0.5
965,995 - ABIE53_004761 0.44 +0.5
965,995 - ABIE53_004761 0.44 +1.2
965,995 - ABIE53_004761 0.44 -0.4
965,995 - ABIE53_004761 0.44 +0.7
965,995 - ABIE53_004761 0.44 -2.5
965,995 - ABIE53_004761 0.44 +1.2
966,201 + ABIE53_004761 0.61 -1.4
966,202 - ABIE53_004761 0.61 +1.2

Or see this region's nucleotide sequence