Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003448

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,874,420	+				-0.5
3,874,421	-				-0.6
3,874,421	-				-0.7
3,874,421	-				+0.1
3,874,522	+				+0.3
3,874,522	+				-0.7
3,874,522	+				+1.4
3,874,523	-				-0.1
3,874,523	-				-0.2
3,874,523	-				+0.3
3,874,523	-				+0.0
3,874,541	+				+0.0
3,874,566	+				-0.7
3,874,566	+				-0.8
3,874,567	-				+0.3
3,874,681	+		ABIE53_003447	0.17	-0.0
3,874,682	-		ABIE53_003447	0.17	+0.3
3,874,682	-		ABIE53_003447	0.17	-1.3
3,874,714	+		ABIE53_003447	0.21	+0.2
3,874,714	+		ABIE53_003447	0.21	+1.4
3,874,714	+		ABIE53_003447	0.21	-0.3
3,874,878	+		ABIE53_003447	0.41	-0.0
3,874,878	+		ABIE53_003447	0.41	-0.7
3,874,938	+		ABIE53_003447	0.48	+0.5
3,874,939	-		ABIE53_003447	0.48	-0.2
3,874,939	-		ABIE53_003447	0.48	-1.0
3,874,939	-		ABIE53_003447	0.48	+0.1
3,874,939	-		ABIE53_003447	0.48	-1.7
3,874,940	+		ABIE53_003447	0.48	-0.7
3,874,940	+		ABIE53_003447	0.48	-0.3
3,874,941	-		ABIE53_003447	0.49	-0.3
3,874,941	-		ABIE53_003447	0.49	-2.6
3,874,954	+		ABIE53_003447	0.50	+1.3
3,874,955	-		ABIE53_003447	0.50	-0.7
3,874,955	-		ABIE53_003447	0.50	-0.1
3,874,955	-		ABIE53_003447	0.50	-0.8
3,874,955	-		ABIE53_003447	0.50	-1.0
3,874,955	-		ABIE53_003447	0.50	-1.5
3,874,958	+		ABIE53_003447	0.51	-1.6
3,874,958	+		ABIE53_003447	0.51	+0.1
3,874,958	+		ABIE53_003447	0.51	-0.5
3,874,958	+		ABIE53_003447	0.51	-0.5
3,874,959	-		ABIE53_003447	0.51	-0.9
3,874,959	-		ABIE53_003447	0.51	-0.3
3,875,113	-		ABIE53_003447	0.69	+1.0
3,875,113	-		ABIE53_003447	0.69	-0.1
3,875,153	+		ABIE53_003447	0.74	+1.6
3,875,153	+		ABIE53_003447	0.74	-1.0
3,875,153	+		ABIE53_003447	0.74	-0.2
3,875,153	+		ABIE53_003447	0.74	-0.6
3,875,153	+		ABIE53_003447	0.74	-0.3
3,875,153	+		ABIE53_003447	0.74	+0.3
3,875,153	+		ABIE53_003447	0.74	-0.9
3,875,153	+		ABIE53_003447	0.74	-0.3
3,875,153	+		ABIE53_003447	0.74	+0.9
3,875,154	-		ABIE53_003447	0.74	-1.1
3,875,154	-		ABIE53_003447	0.74	-0.1
3,875,154	-		ABIE53_003447	0.74	-2.3
3,875,154	-		ABIE53_003447	0.74	-0.1
3,875,154	-		ABIE53_003447	0.74	-0.4
3,875,154	-		ABIE53_003447	0.74	-2.4
3,875,154	-		ABIE53_003447	0.74	-1.5
3,875,157	+		ABIE53_003447	0.75	-2.5
3,875,157	+		ABIE53_003447	0.75	-1.3
3,875,158	-		ABIE53_003447	0.75	-0.0
3,875,158	-		ABIE53_003447	0.75	-0.3
3,875,284	+				-0.7
3,875,285	-				-0.3
3,875,328	+				-0.6
3,875,328	+				+0.2
3,875,329	-				+0.3
3,875,380	+				-0.0
3,875,380	+				+0.8
3,875,380	+				+2.9
3,875,380	+				-0.1
3,875,381	-				+0.3
3,875,381	-				+1.2
3,875,387	+				+1.3
3,875,387	+				+2.3
3,875,387	+				-0.7
3,875,387	+				-0.1
3,875,388	-				-0.9
3,875,388	-				-0.3
3,875,388	-				-0.2
3,875,388	-				-0.3
3,875,388	-				-0.2
3,875,388	-				+0.4
3,875,388	-				+1.7
3,875,388	-				-1.6
3,875,388	-				-0.3
3,875,388	-				+0.8
3,875,394	+				-0.0
3,875,394	+				-1.9
3,875,394	+				-0.5
3,875,394	+				-0.7
3,875,394	+				-0.9
3,875,395	-				-0.2
3,875,395	-				-0.5
3,875,395	-				+0.8
3,875,395	-				-1.1
3,875,546	-		ABIE53_003448	0.14	-1.5
3,875,557	+		ABIE53_003448	0.15	-1.3
3,875,557	+		ABIE53_003448	0.15	-1.0
3,875,559	+		ABIE53_003448	0.15	-2.6
3,875,559	+		ABIE53_003448	0.15	-1.5
3,875,559	+		ABIE53_003448	0.15	-3.4
3,875,559	+		ABIE53_003448	0.15	-2.0
3,875,559	+		ABIE53_003448	0.15	-2.5
3,875,559	+		ABIE53_003448	0.15	-2.8
3,875,559	+		ABIE53_003448	0.15	-2.8
3,875,559	+		ABIE53_003448	0.15	-1.8
3,875,559	+		ABIE53_003448	0.15	-1.3
3,875,559	+		ABIE53_003448	0.15	+1.3
3,875,559	+		ABIE53_003448	0.15	-3.9
3,875,559	+		ABIE53_003448	0.15	-1.5
3,875,559	+		ABIE53_003448	0.15	-1.5
3,875,559	+		ABIE53_003448	0.15	-1.1
3,875,559	+		ABIE53_003448	0.15	-1.4
3,875,559	+		ABIE53_003448	0.15	-1.0
3,875,559	+		ABIE53_003448	0.15	-4.2
3,875,559	+		ABIE53_003448	0.15	-1.3
3,875,559	+		ABIE53_003448	0.15	-1.3
3,875,559	+		ABIE53_003448	0.15	-1.0
3,875,559	+		ABIE53_003448	0.15	-2.3
3,875,559	+		ABIE53_003448	0.15	-2.3
3,875,560	-		ABIE53_003448	0.16	-1.0
3,875,560	-		ABIE53_003448	0.16	-2.3
3,875,560	-		ABIE53_003448	0.16	-0.3
3,875,560	-		ABIE53_003448	0.16	-1.9
3,875,560	-		ABIE53_003448	0.16	+0.3
3,875,560	-		ABIE53_003448	0.16	-2.1
3,875,560	-		ABIE53_003448	0.16	+1.3
3,875,560	-		ABIE53_003448	0.16	-2.9
3,875,560	-		ABIE53_003448	0.16	+0.3
3,875,560	-		ABIE53_003448	0.16	-1.5
3,875,560	-		ABIE53_003448	0.16	-2.6
3,875,560	-		ABIE53_003448	0.16	-3.5
3,875,560	-		ABIE53_003448	0.16	-4.1
3,875,560	-		ABIE53_003448	0.16	-1.0
3,875,560	-		ABIE53_003448	0.16	-2.1
3,875,560	-		ABIE53_003448	0.16	-2.0
3,875,635	+		ABIE53_003448	0.23	-2.3
3,875,635	+		ABIE53_003448	0.23	-2.3
3,875,636	-		ABIE53_003448	0.23	-0.3
3,875,636	-		ABIE53_003448	0.23	-3.3
3,875,784	+		ABIE53_003448	0.36	-2.9
3,875,784	+		ABIE53_003448	0.36	-0.3
3,875,784	+		ABIE53_003448	0.36	-1.5
3,875,784	+		ABIE53_003448	0.36	-0.5
3,875,784	+		ABIE53_003448	0.36	-1.0
3,875,785	-		ABIE53_003448	0.36	-0.3
3,875,785	-		ABIE53_003448	0.36	-1.7
3,875,785	-		ABIE53_003448	0.36	-2.1
3,875,800	+		ABIE53_003448	0.38	-1.3
3,875,926	+		ABIE53_003448	0.50	-2.6
3,875,926	+		ABIE53_003448	0.50	-0.8
3,875,926	+		ABIE53_003448	0.50	+1.3
3,875,926	+		ABIE53_003448	0.50	+1.3
3,875,926	+		ABIE53_003448	0.50	-2.4
3,875,927	-		ABIE53_003448	0.50	-1.1
3,875,927	-		ABIE53_003448	0.50	-2.6
3,875,927	-		ABIE53_003448	0.50	-1.3
3,875,927	-		ABIE53_003448	0.50	-0.3
3,876,129	+		ABIE53_003448	0.69	-3.6
3,876,160	+		ABIE53_003448	0.71	-2.8
3,876,224	-		ABIE53_003448	0.77	-2.6
3,876,224	-		ABIE53_003448	0.77	-2.4
3,876,243	+		ABIE53_003448	0.79	-1.5
3,876,243	+		ABIE53_003448	0.79	-3.7
3,876,244	-		ABIE53_003448	0.79	+1.3
3,876,244	-		ABIE53_003448	0.79	-2.6
3,876,244	-		ABIE53_003448	0.79	-2.5
3,876,244	-		ABIE53_003448	0.79	-0.7
3,876,339	-		ABIE53_003448	0.88	-2.7
3,876,339	-		ABIE53_003448	0.88	-1.0
3,876,339	-		ABIE53_003448	0.88	-1.3
3,876,481	+				-2.0
3,876,481	+				-0.7
3,876,481	+				-1.5
3,876,481	+				-2.0
3,876,482	-				+1.3
3,876,482	-				+0.7
3,876,482	-				+0.1
3,876,551	+				-0.7
3,876,551	+				-0.3
3,876,552	-				-0.9
3,876,604	+				-0.1
3,876,605	-				-0.3
3,876,731	+		ABIE53_003449	0.11	-1.2
3,876,731	+		ABIE53_003449	0.11	-0.4
3,876,731	+		ABIE53_003449	0.11	-0.3
3,876,731	+		ABIE53_003449	0.11	-0.7
3,876,731	+		ABIE53_003449	0.11	-1.1
3,876,731	+		ABIE53_003449	0.11	+0.9
3,876,731	+		ABIE53_003449	0.11	-0.8
3,876,731	+		ABIE53_003449	0.11	-0.3
3,876,731	+		ABIE53_003449	0.11	-1.0
3,876,732	-		ABIE53_003449	0.12	-0.5
3,876,732	-		ABIE53_003449	0.12	-1.0
3,876,732	-		ABIE53_003449	0.12	-0.6
3,876,732	-		ABIE53_003449	0.12	-0.3
3,876,772	+		ABIE53_003449	0.16	+0.6
3,876,772	+		ABIE53_003449	0.16	+0.8
3,876,772	+		ABIE53_003449	0.16	-0.9
3,876,772	+		ABIE53_003449	0.16	-1.3
3,876,773	-		ABIE53_003449	0.16	+1.7
3,876,773	-		ABIE53_003449	0.16	-0.1
3,876,773	-		ABIE53_003449	0.16	-1.1
3,876,773	-		ABIE53_003449	0.16	+2.3
3,876,773	-		ABIE53_003449	0.16	-1.8
3,876,773	-		ABIE53_003449	0.16	-2.1
3,876,773	-		ABIE53_003449	0.16	+0.6
3,876,991	+		ABIE53_003449	0.41	+3.9
3,876,991	+		ABIE53_003449	0.41	-1.6
3,876,991	+		ABIE53_003449	0.41	+1.3
3,876,991	+		ABIE53_003449	0.41	-1.3
3,876,991	+		ABIE53_003449	0.41	+1.3
3,876,991	+		ABIE53_003449	0.41	-1.7
3,876,991	+		ABIE53_003449	0.41	-0.3
3,876,991	+		ABIE53_003449	0.41	+1.3
3,876,991	+		ABIE53_003449	0.41	+2.3
3,876,991	+		ABIE53_003449	0.41	-0.8
3,876,991	+		ABIE53_003449	0.41	+0.7
3,876,991	+		ABIE53_003449	0.41	-0.3
3,876,991	+		ABIE53_003449	0.41	+0.3
3,876,991	+		ABIE53_003449	0.41	-1.1
3,876,991	+		ABIE53_003449	0.41	-1.9
3,876,991	+		ABIE53_003449	0.41	-0.7
3,876,992	-		ABIE53_003449	0.41	+0.4
3,876,992	-		ABIE53_003449	0.41	-0.5
3,876,992	-		ABIE53_003449	0.41	+1.3
3,876,992	-		ABIE53_003449	0.41	-0.6
3,876,992	-		ABIE53_003449	0.41	-0.0
3,876,992	-		ABIE53_003449	0.41	+1.3
3,876,992	-		ABIE53_003449	0.41	-1.4
3,876,992	-		ABIE53_003449	0.41	+0.0
3,876,992	-		ABIE53_003449	0.41	-1.0
3,876,992	-		ABIE53_003449	0.41	-0.4
3,876,992	-		ABIE53_003449	0.41	-0.1
3,877,123	+		ABIE53_003449	0.56	+0.3
3,877,123	+		ABIE53_003449	0.56	-0.8
3,877,123	+		ABIE53_003449	0.56	+1.3
3,877,123	+		ABIE53_003449	0.56	+0.3
3,877,124	-		ABIE53_003449	0.56	-0.7
3,877,124	-		ABIE53_003449	0.56	+0.6
3,877,124	-		ABIE53_003449	0.56	+0.9
3,877,124	-		ABIE53_003449	0.56	-0.3
3,877,124	-		ABIE53_003449	0.56	-0.7
3,877,124	-		ABIE53_003449	0.56	-1.3
3,877,124	-		ABIE53_003449	0.56	-0.9
3,877,125	+		ABIE53_003449	0.57	+0.9
3,877,125	+		ABIE53_003449	0.57	-0.8
3,877,125	+		ABIE53_003449	0.57	-0.5
3,877,125	+		ABIE53_003449	0.57	+0.6
3,877,125	+		ABIE53_003449	0.57	-0.0
3,877,125	+		ABIE53_003449	0.57	+0.1
3,877,125	+		ABIE53_003449	0.57	-0.3
3,877,125	+		ABIE53_003449	0.57	+0.9
3,877,125	+		ABIE53_003449	0.57	-1.7
3,877,125	+		ABIE53_003449	0.57	+0.2
3,877,126	-		ABIE53_003449	0.57	+0.3
3,877,126	-		ABIE53_003449	0.57	+0.1
3,877,126	-		ABIE53_003449	0.57	-1.0
3,877,126	-		ABIE53_003449	0.57	+0.6
3,877,126	-		ABIE53_003449	0.57	-0.9
3,877,276	+		ABIE53_003449	0.74	-0.6
3,877,276	+		ABIE53_003449	0.74	-1.1
3,877,276	+		ABIE53_003449	0.74	+0.3
3,877,276	+		ABIE53_003449	0.74	-1.2
3,877,276	+		ABIE53_003449	0.74	-0.3
3,877,276	+		ABIE53_003449	0.74	+0.3
3,877,276	+		ABIE53_003449	0.74	+0.3
3,877,276	+		ABIE53_003449	0.74	-0.6
3,877,276	+		ABIE53_003449	0.74	-1.3
3,877,276	+		ABIE53_003449	0.74	+0.8
3,877,276	+		ABIE53_003449	0.74	+0.3
3,877,276	+		ABIE53_003449	0.74	+0.3
3,877,276	+		ABIE53_003449	0.74	+0.1
3,877,276	+		ABIE53_003449	0.74	-1.7
3,877,276	+		ABIE53_003449	0.74	+1.7
3,877,277	-		ABIE53_003449	0.74	+0.1
3,877,277	-		ABIE53_003449	0.74	-0.9
3,877,277	-		ABIE53_003449	0.74	-0.5
3,877,277	-		ABIE53_003449	0.74	+0.1