Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003383

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,803,541	+		ABIE53_003381	0.87	-0.7
3,803,541	+		ABIE53_003381	0.87	+0.1
3,803,542	-		ABIE53_003381	0.87	-0.3
3,803,542	-		ABIE53_003381	0.87	-0.4
3,803,544	+		ABIE53_003381	0.87	+1.3
3,803,545	-		ABIE53_003381	0.87	-1.5
3,803,602	+				-0.9
3,803,602	+				-0.2
3,803,603	-				-0.5
3,803,665	+				+1.0
3,803,666	-				+0.3
3,803,666	-				+1.9
3,803,710	+				+0.0
3,803,711	-				-2.1
3,803,760	-				+0.4
3,803,760	-				-0.4
3,803,760	-				-0.7
3,803,760	-				+0.5
3,803,815	+				-0.8
3,803,815	+				-0.9
3,803,815	+				-1.5
3,803,815	+				+0.1
3,803,816	-				+0.3
3,803,816	-				-0.1
3,803,816	-				-1.0
3,803,816	-				+1.3
3,803,890	+		ABIE53_003382	0.17	+0.2
3,803,890	+		ABIE53_003382	0.17	-0.3
3,803,890	+		ABIE53_003382	0.17	+0.3
3,803,896	+		ABIE53_003382	0.18	-0.3
3,803,897	-		ABIE53_003382	0.18	+0.7
3,803,897	-		ABIE53_003382	0.18	-0.6
3,803,897	-		ABIE53_003382	0.18	+3.2
3,803,897	-		ABIE53_003382	0.18	-0.3
3,803,956	+		ABIE53_003382	0.26	-0.9
3,803,957	-		ABIE53_003382	0.26	+1.3
3,803,957	-		ABIE53_003382	0.26	-0.3
3,803,975	-		ABIE53_003382	0.28	+1.3
3,804,054	+		ABIE53_003382	0.39	+0.8
3,804,054	+		ABIE53_003382	0.39	-0.0
3,804,055	-		ABIE53_003382	0.39	+0.9
3,804,055	-		ABIE53_003382	0.39	-0.1
3,804,055	-		ABIE53_003382	0.39	+1.0
3,804,109	+		ABIE53_003382	0.47	+0.8
3,804,284	+		ABIE53_003382	0.70	+0.2
3,804,285	-		ABIE53_003382	0.70	+0.3
3,804,494	-				-1.2
3,804,494	-				+0.2
3,804,542	+				+0.1
3,804,552	+				-0.1
3,804,552	+				-0.3
3,804,553	-				-1.2
3,804,553	-				-0.3
3,804,553	-				+0.9
3,804,554	+				-0.3
3,804,554	+				-0.0
3,804,554	+				+0.0
3,804,554	+				-0.2
3,804,554	+				+1.0
3,804,554	+				+0.6
3,804,554	+				+0.3
3,804,555	-				-0.0
3,804,555	-				+1.3
3,804,555	-				-0.5
3,804,555	-				+0.6
3,804,555	-				+2.3
3,804,555	-				-1.3
3,804,555	-				+0.8
3,804,720	+		ABIE53_003383	0.14	-1.5
3,804,720	+		ABIE53_003383	0.14	-0.8
3,804,720	+		ABIE53_003383	0.14	+0.3
3,804,721	-		ABIE53_003383	0.14	-0.3
3,804,721	-		ABIE53_003383	0.14	-0.9
3,804,723	-		ABIE53_003383	0.14	-0.7
3,804,884	+		ABIE53_003383	0.25	-0.3
3,804,884	+		ABIE53_003383	0.25	-1.2
3,804,885	-		ABIE53_003383	0.25	-0.7
3,805,148	+		ABIE53_003383	0.42	+1.3
3,805,148	+		ABIE53_003383	0.42	+0.4
3,805,148	+		ABIE53_003383	0.42	-0.3
3,805,148	+		ABIE53_003383	0.42	-0.7
3,805,148	+		ABIE53_003383	0.42	-1.9
3,805,149	-		ABIE53_003383	0.42	-1.2
3,805,149	-		ABIE53_003383	0.42	-0.3
3,805,149	-		ABIE53_003383	0.42	+1.3
3,805,149	-		ABIE53_003383	0.42	-1.0
3,805,477	-		ABIE53_003383	0.63	+0.8
3,805,477	-		ABIE53_003383	0.63	-1.5
3,805,477	-		ABIE53_003383	0.63	+0.2
3,805,481	+		ABIE53_003383	0.64	-0.7
3,805,481	+		ABIE53_003383	0.64	+0.1
3,805,482	-		ABIE53_003383	0.64	-0.9
3,805,482	-		ABIE53_003383	0.64	+0.3
3,805,541	+		ABIE53_003383	0.67	-0.7
3,805,541	+		ABIE53_003383	0.67	-0.0
3,805,541	+		ABIE53_003383	0.67	-2.3
3,805,542	-		ABIE53_003383	0.68	-0.2
3,805,542	-		ABIE53_003383	0.68	-0.7
3,805,550	+		ABIE53_003383	0.68	+1.7
3,805,550	+		ABIE53_003383	0.68	-0.9
3,805,551	-		ABIE53_003383	0.68	+0.7
3,805,551	-		ABIE53_003383	0.68	+0.5
3,805,551	-		ABIE53_003383	0.68	-1.2
3,805,571	+		ABIE53_003383	0.69	-1.4
3,805,588	+		ABIE53_003383	0.70	-0.1
3,805,588	+		ABIE53_003383	0.70	+1.7
3,805,589	-		ABIE53_003383	0.71	+0.7
3,805,637	+		ABIE53_003383	0.74	-0.5
3,805,637	+		ABIE53_003383	0.74	-0.9
3,805,637	+		ABIE53_003383	0.74	-0.1
3,805,637	+		ABIE53_003383	0.74	-0.4
3,805,637	+		ABIE53_003383	0.74	-1.6
3,805,637	+		ABIE53_003383	0.74	-0.7
3,805,638	-		ABIE53_003383	0.74	-1.3
3,805,638	-		ABIE53_003383	0.74	-0.2
3,805,748	+		ABIE53_003383	0.81	-0.8
3,805,793	+		ABIE53_003383	0.84	+1.3
3,805,794	-		ABIE53_003383	0.84	-2.2
3,805,921	+				-0.5
3,805,947	-				-2.4
3,805,972	-				-2.3
3,806,036	+				-0.4
3,806,036	+				-1.5
3,806,036	+				-0.3
3,806,036	+				-1.7
3,806,036	+				-0.8
3,806,036	+				+0.3
3,806,037	-				+1.3
3,806,037	-				-1.8
3,806,037	-				-0.8
3,806,037	-				-0.5
3,806,043	+				-0.0
3,806,044	-				-1.0
3,806,060	+				+0.4
3,806,060	+				+0.0
3,806,061	-				-1.5
3,806,076	+				+0.7
3,806,077	-				-1.8
3,806,237	+		ABIE53_003384	0.13	-1.3
3,806,237	+		ABIE53_003384	0.13	-1.9
3,806,238	-		ABIE53_003384	0.14	-0.4
3,806,244	-		ABIE53_003384	0.14	-1.5
3,806,267	-		ABIE53_003384	0.16	-2.1
3,806,409	+		ABIE53_003384	0.29	+0.3
3,806,410	-		ABIE53_003384	0.29	-1.4
3,806,411	+		ABIE53_003384	0.29	-3.2
3,806,411	+		ABIE53_003384	0.29	-2.2
3,806,412	-		ABIE53_003384	0.29	-0.3
3,806,412	-		ABIE53_003384	0.29	+0.7
3,806,427	-		ABIE53_003384	0.31	-0.5
3,806,427	-		ABIE53_003384	0.31	-0.5
3,806,536	+		ABIE53_003384	0.41	+0.3
3,806,536	+		ABIE53_003384	0.41	-2.4
3,806,537	-		ABIE53_003384	0.41	-1.7
3,806,685	+		ABIE53_003384	0.54	-1.0
3,806,746	-		ABIE53_003384	0.60	-1.9
3,806,746	-		ABIE53_003384	0.60	+0.3
3,806,746	-		ABIE53_003384	0.60	-1.8
3,806,746	-		ABIE53_003384	0.60	-0.9
3,806,753	+		ABIE53_003384	0.60	-2.6
3,806,754	-		ABIE53_003384	0.61	-0.9
3,806,754	-		ABIE53_003384	0.61	-0.7
3,806,822	+		ABIE53_003384	0.67	-2.8
3,806,977	-		ABIE53_003384	0.81	-1.9