Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1188

Experiment: MOLS with alpha-ketoglutaric 2.5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmazG and DVU1187 are separated by 116 nucleotidesDVU1187 and DVU1188 are separated by 47 nucleotidesDVU1188 and DVU1189 overlap by 4 nucleotides DVU1186: mazG - phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data), at 1,275,312 to 1,276,115 mazG DVU1187: DVU1187 - hypothetical protein (TIGR), at 1,276,232 to 1,277,056 DVU1187 DVU1188: DVU1188 - hypothetical protein (TIGR), at 1,277,104 to 1,277,325 DVU1188 DVU1189: DVU1189 - conserved hypothetical protein (TIGR), at 1,277,322 to 1,278,521 DVU1189 Position (kb) 1277 1278Strain fitness (log2 ratio) -2 -1 0 1at 1276.118 kb on - strandat 1276.143 kb on - strandat 1276.214 kb on + strandat 1276.254 kb on - strandat 1276.276 kb on - strandat 1276.327 kb on + strand, within DVU1187at 1276.327 kb on + strand, within DVU1187at 1276.344 kb on - strand, within DVU1187at 1276.495 kb on + strand, within DVU1187at 1276.510 kb on + strand, within DVU1187at 1276.569 kb on - strand, within DVU1187at 1276.666 kb on + strand, within DVU1187at 1276.704 kb on + strand, within DVU1187at 1276.933 kb on - strand, within DVU1187at 1276.938 kb on - strand, within DVU1187at 1276.938 kb on - strand, within DVU1187at 1276.993 kb on - strandat 1277.041 kb on + strandat 1277.087 kb on + strandat 1277.182 kb on - strand, within DVU1188at 1277.215 kb on - strand, within DVU1188at 1277.220 kb on - strand, within DVU1188at 1277.226 kb on - strand, within DVU1188at 1277.287 kb on - strand, within DVU1188at 1277.400 kb on + strandat 1277.479 kb on + strand, within DVU1189at 1277.479 kb on + strand, within DVU1189at 1277.484 kb on + strand, within DVU1189at 1277.487 kb on - strand, within DVU1189at 1277.536 kb on + strand, within DVU1189at 1277.702 kb on - strand, within DVU1189at 1277.703 kb on + strand, within DVU1189at 1277.735 kb on - strand, within DVU1189at 1277.789 kb on + strand, within DVU1189at 1277.865 kb on + strand, within DVU1189at 1277.900 kb on + strand, within DVU1189at 1277.932 kb on + strand, within DVU1189at 1277.940 kb on - strand, within DVU1189at 1277.945 kb on - strand, within DVU1189at 1278.060 kb on - strand, within DVU1189at 1278.094 kb on + strand, within DVU1189at 1278.104 kb on + strand, within DVU1189at 1278.107 kb on - strand, within DVU1189at 1278.109 kb on + strand, within DVU1189at 1278.112 kb on - strand, within DVU1189at 1278.112 kb on - strand, within DVU1189at 1278.143 kb on - strand, within DVU1189at 1278.266 kb on + strand, within DVU1189

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Per-strain Table

Position Strand Gene LocusTag Fraction MOLS with alpha-ketoglutaric 2.5mM as nutrient
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1,276,118 - -0.3
1,276,143 - -0.0
1,276,214 + -0.3
1,276,254 - +0.1
1,276,276 - -2.4
1,276,327 + DVU1187 0.12 +0.2
1,276,327 + DVU1187 0.12 +0.3
1,276,344 - DVU1187 0.14 +0.0
1,276,495 + DVU1187 0.32 -0.4
1,276,510 + DVU1187 0.34 -0.2
1,276,569 - DVU1187 0.41 -0.2
1,276,666 + DVU1187 0.53 -0.3
1,276,704 + DVU1187 0.57 +0.9
1,276,933 - DVU1187 0.85 -0.6
1,276,938 - DVU1187 0.86 +0.1
1,276,938 - DVU1187 0.86 -0.4
1,276,993 - -0.0
1,277,041 + +0.3
1,277,087 + +0.2
1,277,182 - DVU1188 0.35 -2.3
1,277,215 - DVU1188 0.50 +0.0
1,277,220 - DVU1188 0.52 -1.6
1,277,226 - DVU1188 0.55 -2.3
1,277,287 - DVU1188 0.82 +1.6
1,277,400 + +0.8
1,277,479 + DVU1189 0.13 -0.5
1,277,479 + DVU1189 0.13 -1.7
1,277,484 + DVU1189 0.14 -0.2
1,277,487 - DVU1189 0.14 -0.7
1,277,536 + DVU1189 0.18 -0.1
1,277,702 - DVU1189 0.32 -0.5
1,277,703 + DVU1189 0.32 +1.6
1,277,735 - DVU1189 0.34 -0.3
1,277,789 + DVU1189 0.39 -0.4
1,277,865 + DVU1189 0.45 -0.8
1,277,900 + DVU1189 0.48 -0.9
1,277,932 + DVU1189 0.51 -0.2
1,277,940 - DVU1189 0.52 -2.2
1,277,945 - DVU1189 0.52 -0.3
1,278,060 - DVU1189 0.61 -2.4
1,278,094 + DVU1189 0.64 -0.3
1,278,104 + DVU1189 0.65 -0.7
1,278,107 - DVU1189 0.65 -0.4
1,278,109 + DVU1189 0.66 -0.4
1,278,112 - DVU1189 0.66 +1.6
1,278,112 - DVU1189 0.66 -0.2
1,278,143 - DVU1189 0.68 -0.5
1,278,266 + DVU1189 0.79 +0.3

Or see this region's nucleotide sequence