Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23835

Experiment: D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D,L-Malic Acid (C) and Ammonium chloride (N); with TAPS; with chloride
5,342,800	+		PFLU_RS23830	0.39	-0.8
5,342,800	+		PFLU_RS23830	0.39	+0.8
5,342,800	+		PFLU_RS23830	0.39	-1.3
5,342,800	+		PFLU_RS23830	0.39	+2.8
5,342,800	+		PFLU_RS23830	0.39	-0.8
5,342,801	-		PFLU_RS23830	0.39	+1.0
5,342,801	-		PFLU_RS23830	0.39	-1.0
5,342,801	-		PFLU_RS23830	0.39	+2.4
5,343,001	+		PFLU_RS23830	0.53	+0.0
5,343,001	+		PFLU_RS23830	0.53	+2.1
5,343,001	+		PFLU_RS23830	0.53	-0.6
5,343,001	+		PFLU_RS23830	0.53	+2.4
5,343,001	+		PFLU_RS23830	0.53	+4.1
5,343,001	+		PFLU_RS23830	0.53	+1.2
5,343,002	-		PFLU_RS23830	0.53	+2.6
5,343,002	-		PFLU_RS23830	0.53	-0.2
5,343,002	-		PFLU_RS23830	0.53	+3.9
5,343,053	+		PFLU_RS23830	0.56	+1.1
5,343,053	+		PFLU_RS23830	0.56	+1.9
5,343,053	+		PFLU_RS23830	0.56	-0.4
5,343,054	-		PFLU_RS23830	0.56	-0.4
5,343,054	-		PFLU_RS23830	0.56	+1.6
5,343,054	-		PFLU_RS23830	0.56	+2.9
5,343,054	-		PFLU_RS23830	0.56	-0.6
5,343,054	-		PFLU_RS23830	0.56	+2.2
5,343,054	-		PFLU_RS23830	0.56	-0.4
5,343,054	-		PFLU_RS23830	0.56	-0.6
5,343,054	-		PFLU_RS23830	0.56	-0.4
5,343,054	-		PFLU_RS23830	0.56	+0.4
5,343,205	+		PFLU_RS23830	0.67	-0.6
5,343,205	+		PFLU_RS23830	0.67	-1.2
5,343,205	+		PFLU_RS23830	0.67	+3.0
5,343,205	+		PFLU_RS23830	0.67	+1.8
5,343,206	-		PFLU_RS23830	0.67	-0.2
5,343,206	-		PFLU_RS23830	0.67	-0.3
5,343,206	-		PFLU_RS23830	0.67	+0.0
5,343,244	+		PFLU_RS23830	0.69	+0.6
5,343,244	+		PFLU_RS23830	0.69	-0.3
5,343,277	-		PFLU_RS23830	0.72	+1.8
5,343,316	+		PFLU_RS23830	0.74	-0.2
5,343,316	+		PFLU_RS23830	0.74	+1.1
5,343,316	+		PFLU_RS23830	0.74	-0.2
5,343,316	+		PFLU_RS23830	0.74	-1.0
5,343,316	+		PFLU_RS23830	0.74	-0.6
5,343,316	+		PFLU_RS23830	0.74	+0.8
5,343,316	+		PFLU_RS23830	0.74	+1.4
5,343,316	+		PFLU_RS23830	0.74	-1.0
5,343,316	+		PFLU_RS23830	0.74	+0.0
5,343,316	+		PFLU_RS23830	0.74	-1.0
5,343,316	+		PFLU_RS23830	0.74	-1.3
5,343,316	+		PFLU_RS23830	0.74	+2.4
5,343,316	+		PFLU_RS23830	0.74	-0.8
5,343,316	+		PFLU_RS23830	0.74	+0.8
5,343,316	+		PFLU_RS23830	0.74	-0.2
5,343,316	+		PFLU_RS23830	0.74	+1.6
5,343,316	+		PFLU_RS23830	0.74	+0.0
5,343,316	+		PFLU_RS23830	0.74	-2.3
5,343,316	+		PFLU_RS23830	0.74	-0.6
5,343,316	+		PFLU_RS23830	0.74	+0.4
5,343,316	+		PFLU_RS23830	0.74	-1.3
5,343,316	+		PFLU_RS23830	0.74	+0.0
5,343,316	+		PFLU_RS23830	0.74	+0.4
5,343,316	+		PFLU_RS23830	0.74	-1.0
5,343,316	+		PFLU_RS23830	0.74	+1.4
5,343,317	-		PFLU_RS23830	0.74	-1.3
5,343,317	-		PFLU_RS23830	0.74	+0.8
5,343,317	-		PFLU_RS23830	0.74	-0.6
5,343,317	-		PFLU_RS23830	0.74	+2.0
5,343,317	-		PFLU_RS23830	0.74	-1.0
5,343,317	-		PFLU_RS23830	0.74	+0.4
5,343,317	-		PFLU_RS23830	0.74	-0.4
5,343,317	-		PFLU_RS23830	0.74	-0.6
5,343,317	-		PFLU_RS23830	0.74	-1.0
5,343,317	-		PFLU_RS23830	0.74	-1.2
5,343,317	-		PFLU_RS23830	0.74	-0.2
5,343,317	-		PFLU_RS23830	0.74	-0.2
5,343,317	-		PFLU_RS23830	0.74	-0.2
5,343,317	-		PFLU_RS23830	0.74	+1.4
5,343,317	-		PFLU_RS23830	0.74	+0.8
5,343,317	-		PFLU_RS23830	0.74	+0.8
5,343,317	-		PFLU_RS23830	0.74	+2.8
5,343,318	+		PFLU_RS23830	0.74	+0.4
5,343,319	-		PFLU_RS23830	0.74	+0.8
5,343,319	-		PFLU_RS23830	0.74	+1.0
5,343,379	+		PFLU_RS23830	0.79	+3.3
5,343,379	+		PFLU_RS23830	0.79	+3.2
5,343,380	-		PFLU_RS23830	0.79	+0.4
5,343,380	-		PFLU_RS23830	0.79	+0.6
5,343,380	-		PFLU_RS23830	0.79	-0.1
5,343,380	-		PFLU_RS23830	0.79	+1.4
5,343,522	+		PFLU_RS23830	0.88	+0.4
5,343,522	+		PFLU_RS23830	0.88	+0.4
5,343,522	+		PFLU_RS23830	0.88	+0.8
5,343,522	+		PFLU_RS23830	0.88	+0.8
5,343,523	-		PFLU_RS23830	0.88	-0.2
5,343,523	-		PFLU_RS23830	0.88	-1.6
5,343,523	-		PFLU_RS23830	0.88	+2.0
5,343,648	+				-0.6
5,343,648	+				-0.4
5,343,648	+				-0.6
5,343,648	+				+0.0
5,343,648	+				-0.4
5,343,648	+				+3.0
5,343,648	+				+0.8
5,343,648	+				+0.4
5,343,648	+				+0.8
5,343,648	+				+1.4
5,343,648	+				+1.1
5,343,648	+				+2.4
5,343,649	-				+0.3
5,343,649	-				+0.8
5,343,649	-				+0.4
5,343,649	-				+1.8
5,343,649	-				-0.6
5,343,649	-				+0.0
5,343,649	-				+0.4
5,343,795	+		PFLU_RS23835	0.14	-1.9
5,343,795	+		PFLU_RS23835	0.14	+1.5
5,343,796	-		PFLU_RS23835	0.14	+1.2
5,343,796	-		PFLU_RS23835	0.14	-2.7
5,343,796	-		PFLU_RS23835	0.14	-0.6
5,343,834	+		PFLU_RS23835	0.18	-0.6
5,343,834	+		PFLU_RS23835	0.18	-2.2
5,343,834	+		PFLU_RS23835	0.18	+0.3
5,343,835	-		PFLU_RS23835	0.18	-0.4
5,343,835	-		PFLU_RS23835	0.18	-0.8
5,343,835	-		PFLU_RS23835	0.18	-2.3
5,343,835	-		PFLU_RS23835	0.18	+0.3
5,343,958	+		PFLU_RS23835	0.29	+1.0
5,343,958	+		PFLU_RS23835	0.29	-0.0
5,343,958	+		PFLU_RS23835	0.29	-0.6
5,343,959	-		PFLU_RS23835	0.29	-1.3
5,344,038	+		PFLU_RS23835	0.37	-2.0
5,344,038	+		PFLU_RS23835	0.37	-2.4
5,344,039	-		PFLU_RS23835	0.37	+0.9
5,344,134	+		PFLU_RS23835	0.46	-1.2
5,344,134	+		PFLU_RS23835	0.46	+0.9
5,344,174	+		PFLU_RS23835	0.50	-1.0
5,344,174	+		PFLU_RS23835	0.50	+3.7
5,344,174	+		PFLU_RS23835	0.50	-0.1
5,344,174	+		PFLU_RS23835	0.50	-2.8
5,344,175	-		PFLU_RS23835	0.50	+0.4
5,344,175	-		PFLU_RS23835	0.50	+0.3
5,344,175	-		PFLU_RS23835	0.50	-1.5
5,344,175	-		PFLU_RS23835	0.50	+0.2
5,344,175	-		PFLU_RS23835	0.50	-2.2
5,344,175	-		PFLU_RS23835	0.50	-1.4
5,344,175	-		PFLU_RS23835	0.50	+0.4
5,344,176	+		PFLU_RS23835	0.50	-0.5
5,344,177	-		PFLU_RS23835	0.50	+0.2
5,344,342	-		PFLU_RS23835	0.66	-2.3
5,344,342	-		PFLU_RS23835	0.66	-2.3
5,344,399	-		PFLU_RS23835	0.71	-1.9
5,344,399	-		PFLU_RS23835	0.71	-2.5
5,344,414	+		PFLU_RS23835	0.72	+0.6
5,344,415	-		PFLU_RS23835	0.73	+1.2
5,344,415	-		PFLU_RS23835	0.73	-1.8
5,344,415	-		PFLU_RS23835	0.73	+0.9
5,344,452	+		PFLU_RS23835	0.76	+0.0
5,344,599	+		PFLU_RS23835	0.90	-1.2
5,344,599	+		PFLU_RS23835	0.90	-0.6
5,344,599	+		PFLU_RS23835	0.90	+0.8
5,344,600	-				-2.2
5,344,600	-				+0.5
5,344,664	+				+1.2
5,344,664	+				-0.6
5,344,665	-				-0.8
5,344,716	+				+2.9
5,344,716	+				+0.9
5,344,716	+				-1.0
5,344,716	+				+1.6
5,344,716	+				+0.9
5,344,717	-				+0.0
5,344,717	-				-1.2
5,344,717	-				-0.2
5,344,719	+				+0.4
5,344,719	+				-0.1
5,344,719	+				-2.2
5,344,719	+				-0.4
5,344,720	-				-0.4
5,344,755	+				+1.0
5,344,755	+				-1.5
5,344,755	+				+1.5
5,344,755	+				-2.3
5,344,755	+				-1.5
5,344,758	+				+1.6
5,344,758	+				+1.4
5,344,758	+				-0.1
5,344,758	+				+0.4
5,344,759	-				+0.6
5,344,759	-				-0.6
5,344,759	-				-0.1
5,344,759	-				+0.4
5,344,770	+				-1.3
5,344,770	+				-0.1
5,344,770	+				-2.4
5,344,770	+				-2.0
5,344,770	+				-3.3
5,344,770	+				-0.2
5,344,770	+				+1.6
5,344,770	+				-1.0
5,344,770	+				-1.5
5,344,770	+				-1.4
5,344,771	-				-2.1
5,344,771	-				-1.1
5,344,771	-				+0.4
5,344,771	-				+0.0
5,344,771	-				-2.0
5,344,771	-				+1.9
5,344,771	-				+0.4
5,344,771	-				+2.2
5,344,771	-				+2.4
5,344,786	+				+0.9
5,344,786	+				+1.6
5,344,786	+				-2.7
5,344,787	-				-2.9
5,344,787	-				-0.4
5,344,787	-				-1.4
5,344,787	-				-0.9
5,344,789	+				-0.1
5,344,789	+				+0.3
5,344,789	+				+0.5
5,344,789	+				-0.4
5,344,790	-				-2.2
5,344,790	-				+2.2
5,344,790	-				+1.2
5,344,801	+				+0.6
5,344,801	+				-0.1
5,344,811	+				-1.7
5,344,811	+				-1.8
5,344,811	+				-2.4
5,344,811	+				-2.0
5,344,878	-				+1.1
5,344,889	+				-1.9
5,344,889	+				-1.2
5,344,890	-				-1.9
5,344,911	+		PFLU_RS23840	0.14	+0.4
5,344,911	+		PFLU_RS23840	0.14	-1.8
5,344,912	-		PFLU_RS23840	0.15	+0.2
5,344,914	+		PFLU_RS23840	0.15	-0.8
5,344,914	+		PFLU_RS23840	0.15	-1.1
5,344,914	+		PFLU_RS23840	0.15	+1.5
5,344,914	+		PFLU_RS23840	0.15	+0.5
5,344,914	+		PFLU_RS23840	0.15	-2.5
5,344,914	+		PFLU_RS23840	0.15	+0.6
5,344,915	-		PFLU_RS23840	0.16	+0.3
5,344,959	-		PFLU_RS23840	0.30	-1.1
5,344,992	+		PFLU_RS23840	0.40	-1.5
5,344,992	+		PFLU_RS23840	0.40	-1.7
5,344,992	+		PFLU_RS23840	0.40	-0.8
5,344,993	-		PFLU_RS23840	0.41	-1.1
5,344,993	-		PFLU_RS23840	0.41	-2.5
5,344,993	-		PFLU_RS23840	0.41	-0.5
5,345,046	+		PFLU_RS23840	0.58	-1.0
5,345,047	-		PFLU_RS23840	0.58	+2.0
5,345,115	+		PFLU_RS23840	0.80	-1.1
5,345,115	+		PFLU_RS23840	0.80	+0.2
5,345,115	+		PFLU_RS23840	0.80	+1.4
5,345,115	+		PFLU_RS23840	0.80	-2.8
5,345,115	+		PFLU_RS23840	0.80	+0.9
5,345,115	+		PFLU_RS23840	0.80	-0.8
5,345,116	-		PFLU_RS23840	0.80	+0.0
5,345,142	+		PFLU_RS23840	0.88	+0.7
5,345,142	+		PFLU_RS23840	0.88	-0.4
5,345,142	+		PFLU_RS23840	0.88	-1.6
5,345,142	+		PFLU_RS23840	0.88	+0.8
5,345,142	+		PFLU_RS23840	0.88	+1.6
5,345,143	-		PFLU_RS23840	0.89	-1.5
5,345,143	-		PFLU_RS23840	0.89	+0.8
5,345,143	-		PFLU_RS23840	0.89	-1.8
5,345,175	+				-0.9
5,345,175	+				-1.3
5,345,192	+				-1.0
5,345,192	+				-0.1
5,345,192	+				-2.1
5,345,192	+				+0.9
5,345,192	+				-0.6
5,345,192	+				-1.5
5,345,192	+				-0.1
5,345,193	-				+0.4
5,345,193	-				-2.2
5,345,193	-				-0.1
5,345,193	-				-1.6
5,345,193	-				+1.9
5,345,193	-				+0.4
5,345,193	-				-1.4
5,345,193	-				-1.6
5,345,193	-				-0.5
5,345,193	-				-0.4
5,345,193	-				+2.4
5,345,193	-				+1.7
5,345,193	-				+1.2
5,345,193	-				+1.4
5,345,193	-				+0.8
5,345,220	+				-1.1
5,345,220	+				+2.2
5,345,220	+				+0.7
5,345,220	+				+1.3
5,345,220	+				-0.6
5,345,220	+				+0.5
5,345,220	+				-1.4
5,345,220	+				-0.9
5,345,221	-				-1.3
5,345,221	-				-1.3
5,345,221	-				-1.6
5,345,221	-				+0.8
5,345,221	-				+1.2
5,345,224	+				-2.5
5,345,224	+				-2.3
5,345,224	+				-0.6
5,345,224	+				+2.1
5,345,225	-				-1.7
5,345,225	-				-0.5
5,345,225	-				-0.4
5,345,237	-				-1.0
5,345,238	+				+1.8
5,345,238	+				-1.1
5,345,238	+				-0.8
5,345,238	+				+0.7
5,345,238	+				-0.2
5,345,239	-				+1.4
5,345,239	-				+0.4
5,345,239	-				+0.0
5,345,239	-				+1.5
5,345,246	+				-1.8
5,345,246	+				-0.8
5,345,246	+				+0.5
5,345,246	+				-4.0
5,345,246	+				+2.7
5,345,246	+				+1.7
5,345,246	+				-0.7
5,345,246	+				-1.5
5,345,247	-				+0.8
5,345,247	-				-1.3
5,345,247	-				+0.8
5,345,257	+				+1.7
5,345,257	+				+1.9
5,345,257	+				-1.2
5,345,257	+				-0.4
5,345,257	+				-1.2
5,345,257	+				+1.0
5,345,257	+				-2.2
5,345,258	-				-1.9
5,345,258	-				-0.4
5,345,258	-				+2.0
5,345,258	-				+0.0
5,345,258	-				-3.0
5,345,258	-				+0.3
5,345,258	-				+0.4
5,345,267	+				+0.4
5,345,268	-				+0.7
5,345,351	+				-0.5
5,345,351	+				+0.1
5,345,351	+				-2.8
5,345,351	+				-0.3
5,345,352	-				+0.4
5,345,352	-				+0.5
5,345,352	-				-1.4
5,345,352	-				+0.1
5,345,355	+				+0.0
5,345,355	+				-2.1
5,345,355	+				+1.8
5,345,355	+				+0.5
5,345,355	+				+0.8
5,345,355	+				+1.8
5,345,355	+				-2.6
5,345,355	+				-1.7
5,345,355	+				+0.9
5,345,355	+				-2.6
5,345,355	+				-0.2
5,345,355	+				+0.2
5,345,355	+				+1.5
5,345,355	+				-0.6
5,345,355	+				-1.7
5,345,355	+				+0.0
5,345,355	+				-2.3
5,345,356	-				-1.0
5,345,356	-				+1.7
5,345,356	-				+1.0
5,345,356	-				+1.6
5,345,356	-				-0.5
5,345,356	-				-2.9
5,345,356	-				+0.8
5,345,356	-				+0.5
5,345,356	-				-1.5
5,345,356	-				-0.2
5,345,382	+				-1.2
5,345,383	-				+0.4
5,345,526	+				+1.2
5,345,526	+				+3.5
5,345,526	+				+2.2
5,345,527	-				-1.2
5,345,536	+				-2.2
5,345,536	+				+2.2
5,345,536	+				-1.5
5,345,537	-				-0.6
5,345,581	+		PFLU_RS23845	0.20	-1.0