Experiment: MOLS with alpha-ketoglutaric 2.5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0021 and DVUA0022 are separated by 8 nucleotides DVUA0022 and DVUA0023 are separated by 98 nucleotides DVUA0023 and atoC are separated by 71 nucleotides
DVUA0021: DVUA0021 - conserved hypothetical protein (TIGR), at 26,632 to 27,693
DVUA0021
DVUA0022: DVUA0022 - ABC transporter, ATP-binding protein (TIGR), at 27,702 to 28,388
DVUA0022
DVUA0023: DVUA0023 - ABC transporter, permease protein, putative (TIGR), at 28,487 to 29,617
DVUA0023
DVUA0024: atoC - sigma-54 interaction domain protein (TIGR), at 29,689 to 30,828
atoC
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 27.565 kb on + strand, within DVUA0021 at 27.700 kb on + strand at 27.703 kb on - strand at 27.756 kb on + strand at 27.938 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.046 kb on + strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.054 kb on - strand, within DVUA0022 at 28.058 kb on + strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.066 kb on - strand, within DVUA0022 at 28.067 kb on + strand, within DVUA0022 at 28.072 kb on + strand, within DVUA0022 at 28.080 kb on - strand, within DVUA0022 at 28.094 kb on + strand, within DVUA0022 at 28.173 kb on - strand, within DVUA0022 at 28.199 kb on + strand, within DVUA0022 at 28.259 kb on - strand, within DVUA0022 at 28.259 kb on - strand, within DVUA0022 at 28.277 kb on - strand, within DVUA0022 at 28.277 kb on - strand, within DVUA0022 at 28.322 kb on - strand at 28.364 kb on + strand at 28.372 kb on - strand at 28.416 kb on + strand at 28.492 kb on - strand at 28.495 kb on - strand at 28.502 kb on - strand at 28.520 kb on + strand at 28.576 kb on + strand at 28.675 kb on - strand, within DVUA0023 at 28.679 kb on + strand, within DVUA0023 at 28.726 kb on - strand, within DVUA0023 at 28.757 kb on - strand, within DVUA0023 at 28.830 kb on + strand, within DVUA0023 at 28.880 kb on - strand, within DVUA0023 at 29.000 kb on - strand, within DVUA0023 at 29.002 kb on + strand, within DVUA0023 at 29.136 kb on + strand, within DVUA0023 at 29.164 kb on + strand, within DVUA0023 at 29.425 kb on - strand, within DVUA0023 at 29.465 kb on + strand, within DVUA0023 at 29.465 kb on - strand, within DVUA0023 at 29.473 kb on - strand, within DVUA0023 at 29.543 kb on + strand at 29.543 kb on - strand at 29.629 kb on + strand at 29.735 kb on - strand at 29.783 kb on + strand at 29.783 kb on + strand at 29.811 kb on - strand, within atoC at 29.876 kb on + strand, within atoC at 29.876 kb on + strand, within atoC at 29.884 kb on - strand, within atoC at 29.886 kb on - strand, within atoC at 29.968 kb on + strand, within atoC at 30.080 kb on + strand, within atoC at 30.080 kb on + strand, within atoC at 30.131 kb on + strand, within atoC at 30.167 kb on - strand, within atoC at 30.172 kb on + strand, within atoC at 30.218 kb on + strand, within atoC at 30.246 kb on + strand, within atoC at 30.367 kb on - strand, within atoC at 30.441 kb on + strand, within atoC at 30.488 kb on + strand, within atoC at 30.501 kb on - strand, within atoC at 30.587 kb on + strand, within atoC
Per-strain Table
Position Strand Gene LocusTag Fraction MOLS with alpha-ketoglutaric 2.5mM as nutrient remove 27,565 + DVUA0021 0.88 -0.6 27,700 + -0.2 27,703 - -0.7 27,756 + -0.9 27,938 + DVUA0022 0.34 -0.1 28,046 + DVUA0022 0.50 +0.2 28,046 + DVUA0022 0.50 -2.4 28,046 + DVUA0022 0.50 -0.0 28,046 + DVUA0022 0.50 +0.6 28,046 + DVUA0022 0.50 -0.1 28,054 - DVUA0022 0.51 +0.0 28,054 - DVUA0022 0.51 -0.0 28,054 - DVUA0022 0.51 -0.2 28,058 + DVUA0022 0.52 -0.1 28,066 - DVUA0022 0.53 -0.2 28,066 - DVUA0022 0.53 -0.0 28,066 - DVUA0022 0.53 +1.4 28,066 - DVUA0022 0.53 -0.5 28,067 + DVUA0022 0.53 -0.2 28,072 + DVUA0022 0.54 -0.7 28,080 - DVUA0022 0.55 -0.4 28,094 + DVUA0022 0.57 +0.4 28,173 - DVUA0022 0.69 -0.9 28,199 + DVUA0022 0.72 -0.5 28,259 - DVUA0022 0.81 +0.2 28,259 - DVUA0022 0.81 -0.1 28,277 - DVUA0022 0.84 -1.0 28,277 - DVUA0022 0.84 +0.1 28,322 - +0.3 28,364 + -0.7 28,372 - -1.0 28,416 + +0.5 28,492 - -0.7 28,495 - -0.2 28,502 - +1.2 28,520 + +0.5 28,576 + -2.9 28,675 - DVUA0023 0.17 -1.7 28,679 + DVUA0023 0.17 -0.4 28,726 - DVUA0023 0.21 +0.1 28,757 - DVUA0023 0.24 -0.6 28,830 + DVUA0023 0.30 +0.8 28,880 - DVUA0023 0.35 -0.4 29,000 - DVUA0023 0.45 -1.0 29,002 + DVUA0023 0.46 -1.2 29,136 + DVUA0023 0.57 -2.0 29,164 + DVUA0023 0.60 -1.1 29,425 - DVUA0023 0.83 -1.5 29,465 + DVUA0023 0.86 -2.4 29,465 - DVUA0023 0.86 -1.3 29,473 - DVUA0023 0.87 +0.4 29,543 + +0.1 29,543 - -1.3 29,629 + +0.3 29,735 - -2.4 29,783 + -0.1 29,783 + -0.2 29,811 - atoC DVUA0024 0.11 -0.2 29,876 + atoC DVUA0024 0.16 -0.6 29,876 + atoC DVUA0024 0.16 -0.2 29,884 - atoC DVUA0024 0.17 -0.1 29,886 - atoC DVUA0024 0.17 -0.6 29,968 + atoC DVUA0024 0.24 +0.5 30,080 + atoC DVUA0024 0.34 -0.1 30,080 + atoC DVUA0024 0.34 -0.9 30,131 + atoC DVUA0024 0.39 -1.4 30,167 - atoC DVUA0024 0.42 -0.4 30,172 + atoC DVUA0024 0.42 -1.3 30,218 + atoC DVUA0024 0.46 -0.3 30,246 + atoC DVUA0024 0.49 +0.3 30,367 - atoC DVUA0024 0.59 -0.9 30,441 + atoC DVUA0024 0.66 +0.0 30,488 + atoC DVUA0024 0.70 +0.2 30,501 - atoC DVUA0024 0.71 +0.2 30,587 + atoC DVUA0024 0.79 -1.0
Or see this region's nucleotide sequence