Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2866

Experiment: MOLS with alpha-ketoglutaric 2.5mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2863 and DVU2864 are separated by 2 nucleotidesDVU2864 and DVU2865 are separated by 16 nucleotidesDVU2865 and DVU2866 are separated by 17 nucleotidesDVU2866 and DVU2867 are separated by 20 nucleotidesDVU2867 and DVU2868 are separated by 2 nucleotidesDVU2868 and DVU2869 are separated by 8 nucleotides DVU2863: DVU2863 - hypothetical protein (TIGR), at 2,961,310 to 2,961,903 DVU2863 DVU2864: DVU2864 - hypothetical protein (TIGR), at 2,961,906 to 2,962,049 DVU2864 DVU2865: DVU2865 - lipoprotein, putative (TIGR), at 2,962,066 to 2,962,476 DVU2865 DVU2866: DVU2866 - conserved hypothetical protein (TIGR), at 2,962,494 to 2,963,042 DVU2866 DVU2867: DVU2867 - holin (TIGR), at 2,963,063 to 2,963,551 DVU2867 DVU2868: DVU2868 - hypothetical protein (TIGR), at 2,963,554 to 2,963,901 DVU2868 DVU2869: DVU2869 - major head protein (TIGR), at 2,963,910 to 2,964,914 DVU2869 Position (kb) 2962 2963 2964Strain fitness (log2 ratio) -2 -1 0 1at 2961.978 kb on + strand, within DVU2864at 2961.978 kb on + strand, within DVU2864at 2961.993 kb on + strand, within DVU2864at 2962.226 kb on + strand, within DVU2865at 2962.499 kb on - strandat 2962.918 kb on + strand, within DVU2866at 2962.960 kb on - strand, within DVU2866at 2962.960 kb on - strand, within DVU2866at 2962.960 kb on - strand, within DVU2866at 2963.335 kb on + strand, within DVU2867at 2963.627 kb on - strand, within DVU2868

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Per-strain Table

Position Strand Gene LocusTag Fraction MOLS with alpha-ketoglutaric 2.5mM as nutrient
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2,961,978 + DVU2864 0.50 +0.3
2,961,978 + DVU2864 0.50 -1.1
2,961,993 + DVU2864 0.60 -0.1
2,962,226 + DVU2865 0.39 -1.1
2,962,499 - -1.0
2,962,918 + DVU2866 0.77 -0.2
2,962,960 - DVU2866 0.85 -2.5
2,962,960 - DVU2866 0.85 -2.3
2,962,960 - DVU2866 0.85 -0.3
2,963,335 + DVU2867 0.56 +0.1
2,963,627 - DVU2868 0.21 +0.4

Or see this region's nucleotide sequence