Experiment: MOLS with alpha-ketoglutaric 2.5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0815 and cobQ are separated by 153 nucleotides cobQ and DVU0817 are separated by 62 nucleotides DVU0817 and DVU0818 are separated by 202 nucleotides
DVU0815: DVU0815 - AsmA family protein (TIGR), at 902,205 to 904,310
DVU0815
DVU0816: cobQ - cobyric acid synthase CobQ (TIGR), at 904,464 to 906,095
cobQ
DVU0817: DVU0817 - hypothetical protein (TIGR), at 906,158 to 906,625
DVU0817
DVU0818: DVU0818 - conserved domain protein (TIGR), at 906,828 to 908,576
DVU0818
Position (kb) 904
905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 903.572 kb on + strand, within DVU0815 at 903.572 kb on + strand, within DVU0815 at 903.629 kb on + strand, within DVU0815 at 903.749 kb on + strand, within DVU0815 at 903.759 kb on - strand, within DVU0815 at 903.790 kb on - strand, within DVU0815 at 903.790 kb on - strand, within DVU0815 at 903.839 kb on + strand, within DVU0815 at 903.849 kb on + strand, within DVU0815 at 903.858 kb on - strand, within DVU0815 at 903.891 kb on + strand, within DVU0815 at 903.894 kb on - strand, within DVU0815 at 903.943 kb on + strand, within DVU0815 at 903.967 kb on + strand, within DVU0815 at 903.968 kb on - strand, within DVU0815 at 904.033 kb on - strand, within DVU0815 at 904.052 kb on + strand, within DVU0815 at 904.218 kb on + strand at 904.286 kb on - strand at 904.313 kb on - strand at 904.362 kb on + strand at 904.362 kb on + strand at 904.362 kb on + strand at 904.370 kb on - strand at 904.370 kb on - strand at 904.418 kb on + strand at 904.418 kb on + strand at 904.451 kb on + strand at 904.457 kb on - strand at 904.477 kb on + strand at 904.520 kb on - strand at 904.580 kb on + strand at 904.588 kb on - strand at 904.627 kb on + strand at 904.640 kb on - strand, within cobQ at 904.678 kb on + strand, within cobQ at 904.680 kb on - strand, within cobQ at 904.704 kb on - strand, within cobQ at 904.706 kb on + strand, within cobQ at 904.832 kb on - strand, within cobQ at 904.951 kb on - strand, within cobQ at 905.071 kb on - strand, within cobQ at 905.121 kb on + strand, within cobQ at 905.158 kb on + strand, within cobQ at 905.166 kb on - strand, within cobQ at 905.184 kb on + strand, within cobQ at 905.384 kb on - strand, within cobQ at 905.433 kb on + strand, within cobQ at 905.441 kb on + strand, within cobQ at 905.458 kb on + strand, within cobQ at 905.466 kb on - strand, within cobQ at 905.466 kb on - strand, within cobQ at 905.466 kb on - strand, within cobQ at 905.513 kb on - strand, within cobQ at 905.580 kb on - strand, within cobQ at 905.622 kb on - strand, within cobQ at 905.738 kb on + strand, within cobQ at 905.738 kb on + strand, within cobQ at 905.738 kb on + strand, within cobQ at 905.738 kb on + strand, within cobQ at 905.746 kb on - strand, within cobQ at 905.852 kb on - strand, within cobQ at 905.875 kb on - strand, within cobQ at 905.875 kb on - strand, within cobQ at 905.907 kb on + strand, within cobQ at 905.946 kb on - strand at 905.958 kb on - strand at 906.000 kb on + strand at 906.000 kb on + strand at 906.007 kb on + strand at 906.047 kb on + strand at 906.047 kb on + strand at 906.055 kb on - strand at 906.087 kb on - strand at 906.087 kb on - strand at 906.257 kb on + strand, within DVU0817 at 906.330 kb on + strand, within DVU0817 at 906.330 kb on + strand, within DVU0817 at 906.374 kb on - strand, within DVU0817 at 906.527 kb on - strand, within DVU0817 at 906.595 kb on - strand at 906.631 kb on - strand at 906.714 kb on + strand at 906.870 kb on - strand at 906.886 kb on + strand at 906.894 kb on - strand at 906.894 kb on - strand at 906.951 kb on + strand at 906.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MOLS with alpha-ketoglutaric 2.5mM as nutrient remove 903,572 + DVU0815 0.65 -0.7 903,572 + DVU0815 0.65 -0.3 903,629 + DVU0815 0.68 -0.3 903,749 + DVU0815 0.73 -1.4 903,759 - DVU0815 0.74 -0.3 903,790 - DVU0815 0.75 -2.0 903,790 - DVU0815 0.75 +0.3 903,839 + DVU0815 0.78 -0.3 903,849 + DVU0815 0.78 -0.5 903,858 - DVU0815 0.78 +0.7 903,891 + DVU0815 0.80 -0.8 903,894 - DVU0815 0.80 -0.2 903,943 + DVU0815 0.83 -0.1 903,967 + DVU0815 0.84 -0.5 903,968 - DVU0815 0.84 +0.9 904,033 - DVU0815 0.87 -2.1 904,052 + DVU0815 0.88 +1.5 904,218 + +0.9 904,286 - -0.3 904,313 - +0.6 904,362 + -0.2 904,362 + -1.5 904,362 + -0.5 904,370 - +0.1 904,370 - -0.8 904,418 + -0.5 904,418 + -0.5 904,451 + -0.5 904,457 - -0.6 904,477 + -0.3 904,520 - -0.8 904,580 + -0.8 904,588 - -0.4 904,627 + +0.3 904,640 - cobQ DVU0816 0.11 +1.1 904,678 + cobQ DVU0816 0.13 -0.1 904,680 - cobQ DVU0816 0.13 -0.1 904,704 - cobQ DVU0816 0.15 +0.5 904,706 + cobQ DVU0816 0.15 -1.9 904,832 - cobQ DVU0816 0.23 -1.4 904,951 - cobQ DVU0816 0.30 -1.9 905,071 - cobQ DVU0816 0.37 -0.8 905,121 + cobQ DVU0816 0.40 -3.0 905,158 + cobQ DVU0816 0.43 -0.9 905,166 - cobQ DVU0816 0.43 +0.5 905,184 + cobQ DVU0816 0.44 +0.9 905,384 - cobQ DVU0816 0.56 -0.9 905,433 + cobQ DVU0816 0.59 -0.9 905,441 + cobQ DVU0816 0.60 -1.2 905,458 + cobQ DVU0816 0.61 -0.8 905,466 - cobQ DVU0816 0.61 -1.8 905,466 - cobQ DVU0816 0.61 -2.6 905,466 - cobQ DVU0816 0.61 -2.2 905,513 - cobQ DVU0816 0.64 -1.9 905,580 - cobQ DVU0816 0.68 -1.4 905,622 - cobQ DVU0816 0.71 -0.6 905,738 + cobQ DVU0816 0.78 -1.3 905,738 + cobQ DVU0816 0.78 -2.2 905,738 + cobQ DVU0816 0.78 -0.7 905,738 + cobQ DVU0816 0.78 -1.3 905,746 - cobQ DVU0816 0.79 +1.9 905,852 - cobQ DVU0816 0.85 -0.9 905,875 - cobQ DVU0816 0.86 +0.5 905,875 - cobQ DVU0816 0.86 +0.4 905,907 + cobQ DVU0816 0.88 -3.0 905,946 - -0.9 905,958 - -1.1 906,000 + -1.4 906,000 + +2.5 906,007 + -0.4 906,047 + -1.9 906,047 + +0.4 906,055 - -1.8 906,087 - +0.5 906,087 - -1.2 906,257 + DVU0817 0.21 +1.8 906,330 + DVU0817 0.37 -0.3 906,330 + DVU0817 0.37 -0.3 906,374 - DVU0817 0.46 -0.1 906,527 - DVU0817 0.79 -2.1 906,595 - -1.7 906,631 - -1.5 906,714 + -0.1 906,870 - -0.3 906,886 + -1.2 906,894 - +0.1 906,894 - -0.0 906,951 + +0.1 906,959 - -0.3
Or see this region's nucleotide sequence