Experiment: MoLS4 with Oxaloacetate 2.5mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1073 and rpmH are separated by 203 nucleotides rpmH and rnpA are separated by 86 nucleotides rnpA and DVU1076 overlap by 4 nucleotides DVU1076 and yidC are separated by 7 nucleotides
DVU1073: DVU1073 - conserved domain protein (TIGR), at 1,177,463 to 1,178,389
DVU1073
DVU1074: rpmH - ribosomal protein L34 (TIGR), at 1,178,593 to 1,178,727
rpmH
DVU1075: rnpA - ribonuclease P protein component (TIGR), at 1,178,814 to 1,179,104
rnpA
DVU1076: DVU1076 - conserved hypothetical protein TIGR00278 (TIGR), at 1,179,101 to 1,179,361
DVU1076
DVU1077: yidC - inner membrane protein, 60 kDa (TIGR), at 1,179,369 to 1,180,973
yidC
Position (kb)
1178
1179
1180 Strain fitness (log2 ratio)
-2
-1
0
1 at 1177.916 kb on - strand, within DVU1073 at 1177.930 kb on - strand, within DVU1073 at 1177.930 kb on - strand, within DVU1073 at 1177.947 kb on + strand, within DVU1073 at 1177.980 kb on + strand, within DVU1073 at 1178.006 kb on - strand, within DVU1073 at 1178.078 kb on - strand, within DVU1073 at 1178.112 kb on - strand, within DVU1073 at 1178.153 kb on - strand, within DVU1073 at 1178.172 kb on - strand, within DVU1073 at 1178.172 kb on - strand, within DVU1073 at 1178.205 kb on - strand, within DVU1073 at 1178.256 kb on - strand, within DVU1073 at 1178.256 kb on - strand, within DVU1073 at 1178.256 kb on - strand, within DVU1073 at 1178.269 kb on + strand, within DVU1073 at 1178.277 kb on - strand, within DVU1073 at 1178.277 kb on - strand, within DVU1073 at 1178.277 kb on - strand, within DVU1073 at 1178.305 kb on + strand at 1178.306 kb on + strand at 1178.324 kb on - strand at 1178.334 kb on - strand at 1178.334 kb on - strand at 1178.373 kb on + strand at 1178.414 kb on + strand at 1178.454 kb on - strand at 1178.468 kb on + strand at 1179.062 kb on + strand, within rnpA at 1179.118 kb on - strand at 1179.311 kb on - strand, within DVU1076
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with Oxaloacetate 2.5mM as nutrient remove 1,177,916 - DVU1073 0.49 +0.5 1,177,930 - DVU1073 0.50 -0.4 1,177,930 - DVU1073 0.50 +0.1 1,177,947 + DVU1073 0.52 -0.0 1,177,980 + DVU1073 0.56 +0.5 1,178,006 - DVU1073 0.59 -1.4 1,178,078 - DVU1073 0.66 -0.9 1,178,112 - DVU1073 0.70 +0.3 1,178,153 - DVU1073 0.74 +0.6 1,178,172 - DVU1073 0.76 +0.2 1,178,172 - DVU1073 0.76 -0.5 1,178,205 - DVU1073 0.80 -0.2 1,178,256 - DVU1073 0.86 -1.6 1,178,256 - DVU1073 0.86 -0.3 1,178,256 - DVU1073 0.86 -1.5 1,178,269 + DVU1073 0.87 -1.9 1,178,277 - DVU1073 0.88 -0.5 1,178,277 - DVU1073 0.88 -0.4 1,178,277 - DVU1073 0.88 +0.5 1,178,305 + -0.5 1,178,306 + +1.5 1,178,324 - +0.1 1,178,334 - +0.2 1,178,334 - -0.8 1,178,373 + +0.6 1,178,414 + -1.1 1,178,454 - +0.3 1,178,468 + -2.7 1,179,062 + rnpA DVU1075 0.85 -0.9 1,179,118 - -1.6 1,179,311 - DVU1076 0.80 -2.2
Or see this region's nucleotide sequence