Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004818

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,025,078	+		ABIE53_004817	0.30	-2.2
1,025,078	+		ABIE53_004817	0.30	+0.3
1,025,078	+		ABIE53_004817	0.30	+1.3
1,025,078	+		ABIE53_004817	0.30	-2.4
1,025,078	+		ABIE53_004817	0.30	-0.7
1,025,078	+		ABIE53_004817	0.30	-3.0
1,025,079	-		ABIE53_004817	0.30	-3.0
1,025,079	-		ABIE53_004817	0.30	-4.2
1,025,079	-		ABIE53_004817	0.30	+0.3
1,025,079	-		ABIE53_004817	0.30	+2.3
1,025,265	+		ABIE53_004817	0.46	-1.1
1,025,265	+		ABIE53_004817	0.46	-1.9
1,025,265	+		ABIE53_004817	0.46	-1.7
1,025,265	+		ABIE53_004817	0.46	-0.7
1,025,266	-		ABIE53_004817	0.46	+0.3
1,025,575	+		ABIE53_004817	0.72	+1.3
1,025,575	+		ABIE53_004817	0.72	-0.7
1,025,576	-		ABIE53_004817	0.72	-4.7
1,025,875	-				-1.9
1,025,920	+				+0.7
1,025,932	+				+0.6
1,025,932	+				-1.4
1,025,932	+				-0.1
1,025,932	+				-1.7
1,025,932	+				-0.8
1,025,932	+				-1.3
1,025,932	+				+1.7
1,025,932	+				+1.0
1,025,932	+				-0.3
1,025,932	+				-0.6
1,025,932	+				+2.3
1,025,932	+				+0.4
1,025,932	+				-0.5
1,025,932	+				+0.8
1,025,932	+				+0.3
1,025,932	+				+0.1
1,025,932	+				-0.3
1,025,932	+				-1.0
1,025,933	-				-1.0
1,025,933	-				+0.8
1,025,933	-				-0.3
1,025,933	-				+0.1
1,025,933	-				-1.3
1,025,933	-				-0.4
1,025,933	-				-1.0
1,025,933	-				-1.5
1,025,933	-				-1.3
1,025,936	+				-1.5
1,025,936	+				+0.3
1,025,936	+				-1.0
1,025,936	+				+0.1
1,025,936	+				-1.7
1,025,936	+				+2.3
1,025,936	+				+2.3
1,025,936	+				-0.1
1,025,937	-				-0.3
1,025,937	-				+0.3
1,025,937	-				-1.3
1,025,937	-				+1.8
1,025,937	-				+0.9
1,025,937	-				-1.5
1,025,938	+				-2.2
1,025,938	+				+0.6
1,025,938	+				-1.7
1,025,938	+				-0.3
1,025,938	+				-0.0
1,025,939	-				-0.0
1,025,939	-				-0.0
1,025,939	-				+1.2
1,025,939	-				-0.7
1,025,954	+				-1.0
1,025,954	+				+4.2
1,025,955	-				-0.1
1,025,955	-				-1.0
1,025,974	+				-2.5
1,025,975	-				+0.3
1,025,975	-				+0.7
1,026,103	+				-1.2
1,026,103	+				-0.7
1,026,103	+				-0.3
1,026,103	+				+1.0
1,026,103	+				+0.2
1,026,103	+				-0.8
1,026,103	+				+0.6
1,026,103	+				-0.8
1,026,103	+				-0.4
1,026,103	+				-0.4
1,026,104	-				-1.0
1,026,104	-				-0.5
1,026,104	-				+1.7
1,026,104	-				-1.0
1,026,104	-				-0.3
1,026,104	-				+0.1
1,026,104	-				-0.0
1,026,104	-				-0.5
1,026,104	-				-0.0
1,026,105	+				-1.5
1,026,105	+				-0.2
1,026,105	+				+1.3
1,026,105	+				-1.7
1,026,106	-				+0.6
1,026,187	+		ABIE53_004818	0.18	+0.3
1,026,187	+		ABIE53_004818	0.18	+1.3
1,026,187	+		ABIE53_004818	0.18	+0.9
1,026,188	-		ABIE53_004818	0.18	+0.7
1,026,210	+		ABIE53_004818	0.21	-1.7
1,026,210	+		ABIE53_004818	0.21	-1.3
1,026,211	-		ABIE53_004818	0.21	-1.3
1,026,211	-		ABIE53_004818	0.21	+0.9
1,026,211	-		ABIE53_004818	0.21	+1.3
1,026,298	+		ABIE53_004818	0.32	+0.4
1,026,298	+		ABIE53_004818	0.32	-0.1
1,026,298	+		ABIE53_004818	0.32	-1.6
1,026,299	-		ABIE53_004818	0.32	-2.4
1,026,299	-		ABIE53_004818	0.32	+0.1
1,026,299	-		ABIE53_004818	0.32	-0.5
1,026,299	-		ABIE53_004818	0.32	+2.0
1,026,299	-		ABIE53_004818	0.32	-0.5
1,026,642	+		ABIE53_004818	0.76	-0.3
1,026,642	+		ABIE53_004818	0.76	+0.3
1,026,808	+				-1.3
1,026,808	+				-2.1
1,026,809	-				+0.3
1,026,809	-				-1.0
1,026,809	-				-1.4
1,026,809	-				+0.7
1,027,125	+		ABIE53_004819	0.71	-0.1
1,027,125	+		ABIE53_004819	0.71	-0.5
1,027,125	+		ABIE53_004819	0.71	+0.9
1,027,125	+		ABIE53_004819	0.71	-0.7
1,027,125	+		ABIE53_004819	0.71	-2.0
1,027,125	+		ABIE53_004819	0.71	-1.2
1,027,125	+		ABIE53_004819	0.71	+0.3
1,027,125	+		ABIE53_004819	0.71	-1.0
1,027,125	+		ABIE53_004819	0.71	-1.7
1,027,125	+		ABIE53_004819	0.71	-1.3
1,027,126	-		ABIE53_004819	0.72	+0.9
1,027,126	-		ABIE53_004819	0.72	-0.3
1,027,126	-		ABIE53_004819	0.72	-0.3
1,027,126	-		ABIE53_004819	0.72	+0.2
1,027,126	-		ABIE53_004819	0.72	+1.3
1,027,126	-		ABIE53_004819	0.72	-1.5
1,027,188	+				+0.3
1,027,188	+				+0.6
1,027,188	+				-1.0
1,027,189	-				+0.9
1,027,189	-				+0.6
1,027,189	-				+0.4
1,027,189	-				-1.0
1,027,189	-				+0.7
1,027,189	-				-2.2
1,027,207	+				-2.0
1,027,222	+				+3.3
1,027,222	+				-1.5
1,027,222	+				+2.9
1,027,222	+				+0.3
1,027,222	+				+0.9
1,027,222	+				+2.2
1,027,222	+				+0.0
1,027,222	+				+0.2
1,027,222	+				-0.7
1,027,222	+				-0.6
1,027,222	+				-0.3
1,027,222	+				+0.7
1,027,222	+				-0.0
1,027,222	+				-2.5
1,027,222	+				-1.3
1,027,222	+				-2.7
1,027,222	+				+0.3
1,027,222	+				+1.3
1,027,222	+				-0.0
1,027,222	+				-0.1
1,027,222	+				-0.2
1,027,223	-				-0.7
1,027,223	-				+0.6
1,027,223	-				+2.9
1,027,223	-				-1.5
1,027,223	-				+1.0
1,027,223	-				-0.3
1,027,223	-				-1.0
1,027,223	-				-1.0
1,027,223	-				-1.7
1,027,223	-				-1.3
1,027,223	-				-0.4
1,027,223	-				-0.3
1,027,223	-				+0.1
1,027,223	-				-1.7
1,027,223	-				-0.2
1,027,223	-				-0.4
1,027,223	-				-0.0
1,027,248	-				+1.3
1,027,248	-				-0.2
1,027,261	+				-1.2
1,027,261	+				+0.8
1,027,261	+				+1.4
1,027,261	+				+0.7
1,027,261	+				-2.0
1,027,261	+				+4.1
1,027,262	-				+0.3
1,027,262	-				-0.8
1,027,262	-				+1.3
1,027,322	+				-0.5
1,027,322	+				-0.5
1,027,322	+				+0.3
1,027,323	-				-0.6
1,027,323	-				+0.5
1,027,323	-				-0.3
1,027,323	-				+1.3
1,027,323	-				+0.4
1,027,361	+				+1.2
1,027,361	+				-0.3
1,027,361	+				-1.4
1,027,361	+				+0.7
1,027,361	+				-0.1
1,027,361	+				+0.2
1,027,361	+				+0.9
1,027,361	+				+0.7
1,027,361	+				-0.7
1,027,361	+				+2.1
1,027,361	+				-0.5
1,027,361	+				+1.1
1,027,361	+				-0.3
1,027,361	+				+2.1
1,027,361	+				+1.6
1,027,361	+				+2.0
1,027,361	+				-0.0
1,027,361	+				+1.3
1,027,362	-				+0.3
1,027,362	-				-1.3
1,027,362	-				+4.7
1,027,362	-				-0.3
1,027,362	-				-0.7
1,027,362	-				-1.2
1,027,362	-				+0.9
1,027,362	-				+1.3
1,027,362	-				-1.2
1,027,362	-				-0.2
1,027,362	-				+0.6
1,027,362	-				+2.5
1,027,362	-				+0.7
1,027,362	-				-0.3
1,027,362	-				+0.7
1,027,362	-				-0.9
1,027,362	-				+1.7
1,027,362	-				+2.1
1,027,362	-				-0.1
1,027,362	-				+0.2
1,027,362	-				-0.5
1,027,363	+				-0.4
1,027,363	+				-2.2
1,027,363	+				+0.3
1,027,364	-				-0.2
1,027,364	-				-3.6
1,027,364	-				+0.7
1,027,364	-				-0.4
1,027,364	-				-0.0
1,027,364	-				+2.3
1,027,419	+				+2.5
1,027,419	+				+6.6
1,027,419	+				-0.5
1,027,419	+				+7.8
1,027,420	-				+0.7
1,027,575	+		ABIE53_004820	0.21	+3.1
1,027,576	-		ABIE53_004820	0.21	+7.2
1,027,576	-		ABIE53_004820	0.21	+5.5
1,027,576	-		ABIE53_004820	0.21	+5.8
1,027,576	-		ABIE53_004820	0.21	+2.2
1,027,576	-		ABIE53_004820	0.21	+4.9
1,027,581	+		ABIE53_004820	0.21	+4.2
1,027,581	+		ABIE53_004820	0.21	+1.3
1,027,581	+		ABIE53_004820	0.21	+4.4
1,027,581	+		ABIE53_004820	0.21	+1.3
1,027,581	+		ABIE53_004820	0.21	+2.3
1,027,581	+		ABIE53_004820	0.21	+8.9
1,027,581	+		ABIE53_004820	0.21	+5.0
1,027,582	-		ABIE53_004820	0.21	+10.4
1,027,582	-		ABIE53_004820	0.21	+5.1
1,027,582	-		ABIE53_004820	0.21	+3.2
1,027,582	-		ABIE53_004820	0.21	+7.8
1,027,582	-		ABIE53_004820	0.21	+0.3
1,027,582	-		ABIE53_004820	0.21	+6.0
1,027,582	-		ABIE53_004820	0.21	+2.2
1,027,582	-		ABIE53_004820	0.21	+2.5
1,027,582	-		ABIE53_004820	0.21	+1.5
1,027,582	-		ABIE53_004820	0.21	+1.7
1,027,582	-		ABIE53_004820	0.21	+6.7
1,027,591	+		ABIE53_004820	0.23	+6.4
1,027,591	+		ABIE53_004820	0.23	+1.1
1,027,591	+		ABIE53_004820	0.23	+5.0
1,027,591	+		ABIE53_004820	0.23	+2.1
1,027,591	+		ABIE53_004820	0.23	+9.4
1,027,591	+		ABIE53_004820	0.23	+2.0
1,027,591	+		ABIE53_004820	0.23	+6.5
1,027,591	+		ABIE53_004820	0.23	+2.8
1,027,591	+		ABIE53_004820	0.23	+2.9
1,027,591	+		ABIE53_004820	0.23	+5.6
1,027,592	-		ABIE53_004820	0.23	+4.4
1,027,592	-		ABIE53_004820	0.23	+3.8
1,027,592	-		ABIE53_004820	0.23	+1.9
1,027,592	-		ABIE53_004820	0.23	+7.1
1,027,592	-		ABIE53_004820	0.23	+1.3
1,027,592	-		ABIE53_004820	0.23	+5.4
1,027,592	-		ABIE53_004820	0.23	+7.7
1,027,592	-		ABIE53_004820	0.23	+4.0
1,027,739	-		ABIE53_004820	0.41	+2.5
1,027,739	-		ABIE53_004820	0.41	-0.3
1,027,739	-		ABIE53_004820	0.41	+3.9