Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004347 and ABIE53_004348 are separated by 32 nucleotides ABIE53_004348 and ABIE53_004349 are separated by 120 nucleotides
ABIE53_004347: ABIE53_004347 - branched-chain amino acid transport system substrate-binding protein, at 523,409 to 524,557
_004347
ABIE53_004348: ABIE53_004348 - membrane dipeptidase, at 524,590 to 526,062
_004348
ABIE53_004349: ABIE53_004349 - putative porin, at 526,183 to 527,238
_004349
Position (kb) 524
525
526
527 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 523.747 kb on + strand, within ABIE53_004347 at 523.766 kb on + strand, within ABIE53_004347 at 523.808 kb on - strand, within ABIE53_004347 at 523.892 kb on + strand, within ABIE53_004347 at 523.892 kb on + strand, within ABIE53_004347 at 524.166 kb on - strand, within ABIE53_004347 at 524.246 kb on + strand, within ABIE53_004347 at 524.246 kb on + strand, within ABIE53_004347 at 524.345 kb on + strand, within ABIE53_004347 at 524.505 kb on - strand at 524.635 kb on + strand at 524.636 kb on - strand at 524.636 kb on - strand at 524.636 kb on - strand at 524.696 kb on - strand at 525.022 kb on - strand, within ABIE53_004348 at 525.123 kb on - strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.145 kb on + strand, within ABIE53_004348 at 525.146 kb on - strand, within ABIE53_004348 at 525.146 kb on - strand, within ABIE53_004348 at 525.161 kb on + strand, within ABIE53_004348 at 525.175 kb on - strand, within ABIE53_004348 at 525.338 kb on + strand, within ABIE53_004348 at 525.339 kb on - strand, within ABIE53_004348 at 525.340 kb on + strand, within ABIE53_004348 at 525.340 kb on + strand, within ABIE53_004348 at 525.340 kb on + strand, within ABIE53_004348 at 525.341 kb on - strand, within ABIE53_004348 at 525.605 kb on + strand, within ABIE53_004348 at 525.605 kb on + strand, within ABIE53_004348 at 525.911 kb on + strand, within ABIE53_004348 at 525.911 kb on + strand, within ABIE53_004348 at 525.911 kb on + strand, within ABIE53_004348 at 525.986 kb on - strand at 526.063 kb on + strand at 526.064 kb on - strand at 526.155 kb on - strand at 526.155 kb on - strand at 526.307 kb on + strand, within ABIE53_004349 at 526.308 kb on - strand, within ABIE53_004349 at 526.309 kb on + strand, within ABIE53_004349 at 526.582 kb on + strand, within ABIE53_004349 at 526.582 kb on + strand, within ABIE53_004349 at 526.583 kb on - strand, within ABIE53_004349 at 526.583 kb on - strand, within ABIE53_004349 at 526.645 kb on - strand, within ABIE53_004349 at 526.645 kb on - strand, within ABIE53_004349 at 526.666 kb on + strand, within ABIE53_004349 at 526.667 kb on - strand, within ABIE53_004349 at 526.668 kb on + strand, within ABIE53_004349 at 526.668 kb on + strand, within ABIE53_004349 at 526.669 kb on - strand, within ABIE53_004349 at 526.669 kb on - strand, within ABIE53_004349 at 526.687 kb on + strand, within ABIE53_004349 at 526.688 kb on - strand, within ABIE53_004349 at 526.774 kb on + strand, within ABIE53_004349 at 526.876 kb on + strand, within ABIE53_004349 at 526.877 kb on - strand, within ABIE53_004349 at 526.900 kb on + strand, within ABIE53_004349
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=root; GrowthSubstrate=liquid_soil_extract; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 523,747 + ABIE53_004347 0.29 +1.3 523,766 + ABIE53_004347 0.31 +1.2 523,808 - ABIE53_004347 0.35 -0.0 523,892 + ABIE53_004347 0.42 +2.5 523,892 + ABIE53_004347 0.42 -2.7 524,166 - ABIE53_004347 0.66 +0.2 524,246 + ABIE53_004347 0.73 -0.2 524,246 + ABIE53_004347 0.73 +1.2 524,345 + ABIE53_004347 0.81 +3.5 524,505 - -0.5 524,635 + -0.2 524,636 - -0.0 524,636 - -3.5 524,636 - -0.4 524,696 - +0.8 525,022 - ABIE53_004348 0.29 -0.8 525,123 - ABIE53_004348 0.36 -0.7 525,145 + ABIE53_004348 0.38 -1.4 525,145 + ABIE53_004348 0.38 -0.3 525,145 + ABIE53_004348 0.38 -0.9 525,145 + ABIE53_004348 0.38 -0.9 525,145 + ABIE53_004348 0.38 +0.8 525,146 - ABIE53_004348 0.38 +1.8 525,146 - ABIE53_004348 0.38 -0.1 525,161 + ABIE53_004348 0.39 -1.1 525,175 - ABIE53_004348 0.40 +0.2 525,338 + ABIE53_004348 0.51 -0.2 525,339 - ABIE53_004348 0.51 +2.4 525,340 + ABIE53_004348 0.51 +0.9 525,340 + ABIE53_004348 0.51 +1.2 525,340 + ABIE53_004348 0.51 +1.6 525,341 - ABIE53_004348 0.51 +0.5 525,605 + ABIE53_004348 0.69 +0.2 525,605 + ABIE53_004348 0.69 -0.8 525,911 + ABIE53_004348 0.90 +1.8 525,911 + ABIE53_004348 0.90 +1.7 525,911 + ABIE53_004348 0.90 -0.8 525,986 - +1.2 526,063 + -0.9 526,064 - +2.0 526,155 - +0.9 526,155 - +0.2 526,307 + ABIE53_004349 0.12 +0.2 526,308 - ABIE53_004349 0.12 -2.0 526,309 + ABIE53_004349 0.12 -1.6 526,582 + ABIE53_004349 0.38 +0.1 526,582 + ABIE53_004349 0.38 +1.0 526,583 - ABIE53_004349 0.38 +1.8 526,583 - ABIE53_004349 0.38 -0.4 526,645 - ABIE53_004349 0.44 +0.4 526,645 - ABIE53_004349 0.44 +0.2 526,666 + ABIE53_004349 0.46 -0.2 526,667 - ABIE53_004349 0.46 +0.5 526,668 + ABIE53_004349 0.46 +0.8 526,668 + ABIE53_004349 0.46 +0.1 526,669 - ABIE53_004349 0.46 +0.6 526,669 - ABIE53_004349 0.46 +1.2 526,687 + ABIE53_004349 0.48 -1.4 526,688 - ABIE53_004349 0.48 +1.8 526,774 + ABIE53_004349 0.56 -0.3 526,876 + ABIE53_004349 0.66 -1.1 526,877 - ABIE53_004349 0.66 +0.4 526,900 + ABIE53_004349 0.68 +0.2
Or see this region's nucleotide sequence