Experiment: Post-colonization (Day 4) - Cage1A;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0210 and BT0211 are separated by 17 nucleotides BT0211 and BT0212 are separated by 50 nucleotides
BT0210: BT0210 - leucine-rich repeat protein, function unknown (NCBI ptt file), at 230,133 to 232,847
BT0210
BT0211: BT0211 - hypothetical protein (NCBI ptt file), at 232,865 to 234,847
BT0211
BT0212: BT0212 - protease (NCBI ptt file), at 234,898 to 236,985
BT0212
Position (kb) 232
233
234
235 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 231.878 kb on + strand, within BT0210 at 231.888 kb on - strand, within BT0210 at 231.946 kb on + strand, within BT0210 at 231.966 kb on - strand, within BT0210 at 231.970 kb on + strand, within BT0210 at 232.016 kb on + strand, within BT0210 at 232.027 kb on - strand, within BT0210 at 232.101 kb on - strand, within BT0210 at 232.101 kb on - strand, within BT0210 at 232.261 kb on - strand, within BT0210 at 232.339 kb on + strand, within BT0210 at 232.389 kb on - strand, within BT0210 at 232.415 kb on - strand, within BT0210 at 232.466 kb on + strand, within BT0210 at 232.472 kb on - strand, within BT0210 at 232.477 kb on - strand, within BT0210 at 232.501 kb on - strand, within BT0210 at 232.626 kb on - strand at 232.779 kb on - strand at 232.793 kb on - strand at 232.799 kb on + strand at 232.800 kb on - strand at 232.850 kb on + strand at 232.861 kb on - strand at 233.123 kb on - strand, within BT0211 at 233.143 kb on + strand, within BT0211 at 233.155 kb on - strand, within BT0211 at 233.294 kb on - strand, within BT0211 at 233.307 kb on + strand, within BT0211 at 233.663 kb on - strand, within BT0211 at 233.665 kb on + strand, within BT0211 at 233.666 kb on - strand, within BT0211 at 233.753 kb on - strand, within BT0211 at 233.753 kb on - strand, within BT0211 at 233.778 kb on + strand, within BT0211 at 233.815 kb on - strand, within BT0211 at 233.815 kb on - strand, within BT0211 at 233.927 kb on - strand, within BT0211 at 233.930 kb on - strand, within BT0211 at 233.998 kb on - strand, within BT0211 at 234.084 kb on + strand, within BT0211 at 234.084 kb on + strand, within BT0211 at 234.089 kb on - strand, within BT0211 at 234.089 kb on - strand, within BT0211 at 234.200 kb on + strand, within BT0211 at 234.311 kb on + strand, within BT0211 at 234.451 kb on + strand, within BT0211 at 234.506 kb on + strand, within BT0211 at 234.507 kb on - strand, within BT0211 at 234.618 kb on + strand, within BT0211 at 234.661 kb on - strand at 234.729 kb on + strand at 234.855 kb on - strand at 234.918 kb on + strand at 235.168 kb on + strand, within BT0212 at 235.182 kb on + strand, within BT0212 at 235.185 kb on - strand, within BT0212 at 235.300 kb on - strand, within BT0212 at 235.376 kb on - strand, within BT0212 at 235.416 kb on + strand, within BT0212 at 235.459 kb on + strand, within BT0212 at 235.488 kb on + strand, within BT0212 at 235.511 kb on + strand, within BT0212 at 235.587 kb on + strand, within BT0212 at 235.588 kb on - strand, within BT0212 at 235.588 kb on - strand, within BT0212 at 235.622 kb on - strand, within BT0212 at 235.622 kb on - strand, within BT0212 at 235.648 kb on - strand, within BT0212 at 235.676 kb on - strand, within BT0212 at 235.683 kb on + strand, within BT0212 at 235.684 kb on - strand, within BT0212 at 235.717 kb on - strand, within BT0212 at 235.726 kb on + strand, within BT0212 at 235.726 kb on + strand, within BT0212 at 235.727 kb on - strand, within BT0212 at 235.727 kb on - strand, within BT0212 at 235.803 kb on + strand, within BT0212
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1A;Mouse3 remove 231,878 + BT0210 0.64 -0.4 231,888 - BT0210 0.65 -2.1 231,946 + BT0210 0.67 +0.2 231,966 - BT0210 0.68 -1.4 231,970 + BT0210 0.68 -0.6 232,016 + BT0210 0.69 -0.2 232,027 - BT0210 0.70 -0.2 232,101 - BT0210 0.72 -1.2 232,101 - BT0210 0.72 +0.5 232,261 - BT0210 0.78 +0.6 232,339 + BT0210 0.81 -2.5 232,389 - BT0210 0.83 -0.5 232,415 - BT0210 0.84 -3.0 232,466 + BT0210 0.86 -0.8 232,472 - BT0210 0.86 -0.0 232,477 - BT0210 0.86 +0.5 232,501 - BT0210 0.87 -1.0 232,626 - -0.4 232,779 - -1.7 232,793 - -1.0 232,799 + -0.0 232,800 - +0.2 232,850 + -0.8 232,861 - -0.3 233,123 - BT0211 0.13 +0.1 233,143 + BT0211 0.14 -1.1 233,155 - BT0211 0.15 -0.1 233,294 - BT0211 0.22 -1.3 233,307 + BT0211 0.22 -1.0 233,663 - BT0211 0.40 +0.1 233,665 + BT0211 0.40 +0.2 233,666 - BT0211 0.40 +3.8 233,753 - BT0211 0.45 +0.2 233,753 - BT0211 0.45 +1.8 233,778 + BT0211 0.46 -1.3 233,815 - BT0211 0.48 -1.3 233,815 - BT0211 0.48 -0.3 233,927 - BT0211 0.54 -0.3 233,930 - BT0211 0.54 -0.1 233,998 - BT0211 0.57 +0.5 234,084 + BT0211 0.61 +0.2 234,084 + BT0211 0.61 +0.1 234,089 - BT0211 0.62 +1.0 234,089 - BT0211 0.62 +0.4 234,200 + BT0211 0.67 +0.4 234,311 + BT0211 0.73 +0.3 234,451 + BT0211 0.80 -2.1 234,506 + BT0211 0.83 +0.4 234,507 - BT0211 0.83 -1.0 234,618 + BT0211 0.88 -2.0 234,661 - -1.0 234,729 + -1.8 234,855 - -1.5 234,918 + -4.0 235,168 + BT0212 0.13 -0.9 235,182 + BT0212 0.14 -0.9 235,185 - BT0212 0.14 -0.7 235,300 - BT0212 0.19 +0.2 235,376 - BT0212 0.23 -1.0 235,416 + BT0212 0.25 -1.6 235,459 + BT0212 0.27 -0.2 235,488 + BT0212 0.28 -0.2 235,511 + BT0212 0.29 +1.7 235,587 + BT0212 0.33 +0.0 235,588 - BT0212 0.33 -0.2 235,588 - BT0212 0.33 +0.8 235,622 - BT0212 0.35 -1.0 235,622 - BT0212 0.35 -0.5 235,648 - BT0212 0.36 -2.6 235,676 - BT0212 0.37 +0.1 235,683 + BT0212 0.38 +1.3 235,684 - BT0212 0.38 -0.7 235,717 - BT0212 0.39 -0.5 235,726 + BT0212 0.40 -0.6 235,726 + BT0212 0.40 -2.3 235,727 - BT0212 0.40 -1.0 235,727 - BT0212 0.40 -0.7 235,803 + BT0212 0.43 +0.3
Or see this region's nucleotide sequence