Experiment: Post-colonization (Day 2) - Cage1A;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0946 and BT0947 are separated by 55 nucleotides BT0947 and BT0948 are separated by 345 nucleotides
BT0946: BT0946 - hypothetical protein (NCBI ptt file), at 1,155,235 to 1,155,981
BT0946
BT0947: BT0947 - integrase (NCBI ptt file), at 1,156,037 to 1,156,624
BT0947
BT0948: BT0948 - hypothetical protein (NCBI ptt file), at 1,156,970 to 1,157,986
BT0948
Position (kb)
1156
1157 Strain fitness (log2 ratio)
-2
-1
0
1 at 1155.094 kb on + strand at 1155.147 kb on - strand at 1155.147 kb on - strand at 1155.189 kb on - strand at 1155.273 kb on - strand at 1155.279 kb on - strand at 1155.347 kb on + strand, within BT0946 at 1155.348 kb on - strand, within BT0946 at 1155.477 kb on + strand, within BT0946 at 1155.591 kb on - strand, within BT0946 at 1155.693 kb on + strand, within BT0946 at 1155.809 kb on + strand, within BT0946 at 1155.841 kb on - strand, within BT0946 at 1155.843 kb on - strand, within BT0946 at 1155.855 kb on - strand, within BT0946 at 1155.881 kb on + strand, within BT0946 at 1155.906 kb on + strand, within BT0946 at 1155.945 kb on + strand at 1155.972 kb on + strand at 1156.025 kb on - strand at 1156.056 kb on + strand at 1156.060 kb on + strand at 1156.099 kb on + strand, within BT0947 at 1156.175 kb on - strand, within BT0947 at 1156.177 kb on + strand, within BT0947 at 1156.291 kb on - strand, within BT0947 at 1156.317 kb on - strand, within BT0947 at 1156.329 kb on - strand, within BT0947 at 1156.329 kb on - strand, within BT0947 at 1156.344 kb on - strand, within BT0947 at 1156.345 kb on + strand, within BT0947 at 1156.377 kb on - strand, within BT0947 at 1156.387 kb on + strand, within BT0947 at 1156.393 kb on + strand, within BT0947 at 1156.418 kb on - strand, within BT0947 at 1156.427 kb on - strand, within BT0947 at 1156.432 kb on + strand, within BT0947 at 1156.448 kb on + strand, within BT0947 at 1156.517 kb on - strand, within BT0947 at 1156.532 kb on - strand, within BT0947 at 1156.532 kb on - strand, within BT0947 at 1156.533 kb on + strand, within BT0947 at 1156.533 kb on + strand, within BT0947 at 1156.604 kb on - strand at 1156.625 kb on - strand at 1156.625 kb on - strand at 1156.684 kb on + strand at 1156.699 kb on + strand at 1156.733 kb on + strand at 1156.766 kb on + strand at 1156.772 kb on + strand at 1156.779 kb on + strand at 1156.783 kb on + strand at 1156.802 kb on + strand at 1156.810 kb on + strand at 1156.853 kb on - strand at 1156.862 kb on + strand at 1156.865 kb on + strand at 1156.866 kb on - strand at 1156.885 kb on + strand at 1156.921 kb on + strand at 1156.922 kb on - strand at 1156.951 kb on + strand at 1156.952 kb on - strand at 1156.955 kb on + strand at 1157.018 kb on + strand at 1157.019 kb on - strand at 1157.047 kb on - strand at 1157.069 kb on + strand at 1157.073 kb on + strand, within BT0948 at 1157.074 kb on - strand, within BT0948 at 1157.106 kb on + strand, within BT0948 at 1157.107 kb on - strand, within BT0948 at 1157.163 kb on + strand, within BT0948 at 1157.163 kb on + strand, within BT0948 at 1157.164 kb on - strand, within BT0948 at 1157.209 kb on + strand, within BT0948 at 1157.344 kb on - strand, within BT0948 at 1157.387 kb on - strand, within BT0948 at 1157.387 kb on - strand, within BT0948 at 1157.423 kb on - strand, within BT0948 at 1157.427 kb on - strand, within BT0948 at 1157.515 kb on + strand, within BT0948 at 1157.517 kb on + strand, within BT0948 at 1157.578 kb on + strand, within BT0948 at 1157.614 kb on - strand, within BT0948 at 1157.618 kb on - strand, within BT0948
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage1A;Mouse3 remove 1,155,094 + -1.2 1,155,147 - -0.7 1,155,147 - +0.1 1,155,189 - +0.7 1,155,273 - +0.7 1,155,279 - -0.7 1,155,347 + BT0946 0.15 -1.9 1,155,348 - BT0946 0.15 -0.8 1,155,477 + BT0946 0.32 -0.9 1,155,591 - BT0946 0.48 -0.9 1,155,693 + BT0946 0.61 +0.1 1,155,809 + BT0946 0.77 -0.7 1,155,841 - BT0946 0.81 -1.8 1,155,843 - BT0946 0.81 +0.3 1,155,855 - BT0946 0.83 -0.3 1,155,881 + BT0946 0.86 +0.3 1,155,906 + BT0946 0.90 -0.3 1,155,945 + +0.2 1,155,972 + +0.2 1,156,025 - +0.4 1,156,056 + -0.4 1,156,060 + -1.2 1,156,099 + BT0947 0.11 +0.2 1,156,175 - BT0947 0.23 -0.9 1,156,177 + BT0947 0.24 -0.9 1,156,291 - BT0947 0.43 +0.2 1,156,317 - BT0947 0.48 +0.1 1,156,329 - BT0947 0.50 -0.7 1,156,329 - BT0947 0.50 +0.5 1,156,344 - BT0947 0.52 -0.8 1,156,345 + BT0947 0.52 +0.1 1,156,377 - BT0947 0.58 -0.4 1,156,387 + BT0947 0.60 -1.3 1,156,393 + BT0947 0.61 -1.7 1,156,418 - BT0947 0.65 -1.2 1,156,427 - BT0947 0.66 +0.2 1,156,432 + BT0947 0.67 +0.3 1,156,448 + BT0947 0.70 -1.7 1,156,517 - BT0947 0.82 -0.7 1,156,532 - BT0947 0.84 -0.7 1,156,532 - BT0947 0.84 +0.3 1,156,533 + BT0947 0.84 -0.9 1,156,533 + BT0947 0.84 -1.2 1,156,604 - -0.9 1,156,625 - +0.1 1,156,625 - -1.9 1,156,684 + -1.9 1,156,699 + +1.0 1,156,733 + +0.4 1,156,766 + -0.9 1,156,772 + +0.6 1,156,779 + +0.6 1,156,783 + -0.7 1,156,802 + +0.9 1,156,810 + -1.9 1,156,853 - -1.1 1,156,862 + +0.2 1,156,865 + -1.0 1,156,866 - -0.7 1,156,885 + +0.1 1,156,921 + +0.7 1,156,922 - -0.0 1,156,951 + -1.9 1,156,952 - -0.2 1,156,955 + -0.2 1,157,018 + -1.4 1,157,019 - -0.6 1,157,047 - +0.7 1,157,069 + -0.3 1,157,073 + BT0948 0.10 -1.8 1,157,074 - BT0948 0.10 -1.5 1,157,106 + BT0948 0.13 -0.3 1,157,107 - BT0948 0.13 -0.2 1,157,163 + BT0948 0.19 -2.5 1,157,163 + BT0948 0.19 -0.4 1,157,164 - BT0948 0.19 -0.3 1,157,209 + BT0948 0.24 -1.2 1,157,344 - BT0948 0.37 -0.3 1,157,387 - BT0948 0.41 -0.9 1,157,387 - BT0948 0.41 -0.7 1,157,423 - BT0948 0.45 -0.8 1,157,427 - BT0948 0.45 -0.6 1,157,515 + BT0948 0.54 -0.7 1,157,517 + BT0948 0.54 -0.6 1,157,578 + BT0948 0.60 +0.1 1,157,614 - BT0948 0.63 +1.2 1,157,618 - BT0948 0.64 -1.2
Or see this region's nucleotide sequence