Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20190

Experiment: Betaine (C)(N); with TAPS; with chloride

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with TAPS; with chloride
4,571,263	+				+0.4
4,571,282	+				+0.9
4,571,322	+				+0.3
4,571,388	-				-0.9
4,571,434	+		PFLU_RS31305	0.24	+0.1
4,571,434	+		PFLU_RS31305	0.24	-2.4
4,571,434	+		PFLU_RS31305	0.24	-0.4
4,571,434	+		PFLU_RS31305	0.24	-2.9
4,571,435	-		PFLU_RS31305	0.25	-2.4
4,571,435	-		PFLU_RS31305	0.25	-0.1
4,571,435	-		PFLU_RS31305	0.25	+1.4
4,571,435	-		PFLU_RS31305	0.25	-0.4
4,571,435	-		PFLU_RS31305	0.25	+1.5
4,571,435	-		PFLU_RS31305	0.25	+0.3
4,571,452	+		PFLU_RS31305	0.41	+1.3
4,571,452	+		PFLU_RS31305	0.41	-0.1
4,571,453	-		PFLU_RS31305	0.42	+0.1
4,571,453	-		PFLU_RS31305	0.42	+0.8
4,571,453	-		PFLU_RS31305	0.42	+0.6
4,571,453	-		PFLU_RS31305	0.42	+1.9
4,571,518	+				+0.3
4,571,562	+				-1.8
4,571,563	-				-0.0
4,571,572	+				+2.2
4,571,573	-				-2.5
4,571,573	-				-1.9
4,571,573	-				-1.0
4,571,573	-				+2.3
4,571,573	-				+0.4
4,571,573	-				+0.2
4,571,573	-				-0.4
4,571,575	+				-1.4
4,571,652	+				+0.9
4,571,673	+				-0.1
4,571,673	+				-2.4
4,571,673	+				-1.8
4,571,674	-				-0.7
4,571,674	-				+0.3
4,571,737	+		PFLU_RS20185	0.28	+0.9
4,571,737	+		PFLU_RS20185	0.28	+1.2
4,571,737	+		PFLU_RS20185	0.28	+0.2
4,571,738	-		PFLU_RS20185	0.28	-2.3
4,571,738	-		PFLU_RS20185	0.28	-0.9
4,571,738	-		PFLU_RS20185	0.28	-0.6
4,571,738	-		PFLU_RS20185	0.28	-0.9
4,571,738	-		PFLU_RS20185	0.28	-0.0
4,571,738	-		PFLU_RS20185	0.28	+0.1
4,571,744	+		PFLU_RS20185	0.31	-0.0
4,571,821	-		PFLU_RS20185	0.63	-2.5
4,571,955	+				-0.3
4,571,955	+				+0.3
4,571,955	+				-0.4
4,571,956	-				+1.7
4,571,982	+				+0.9
4,571,982	+				-2.0
4,571,982	+				+1.9
4,571,982	+				+2.0
4,571,982	+				+0.3
4,571,982	+				-1.7
4,571,982	+				+1.0
4,571,982	+				-0.1
4,571,982	+				+2.5
4,571,982	+				+2.5
4,571,982	+				-1.4
4,571,983	-				+0.5
4,571,983	-				+1.7
4,571,983	-				-1.8
4,571,983	-				+0.7
4,571,983	-				-0.1
4,571,983	-				+1.7
4,571,983	-				-1.4
4,571,983	-				-0.2
4,571,983	-				-0.6
4,571,983	-				+1.9
4,571,983	-				-1.1
4,571,983	-				+0.3
4,571,998	+				-0.9
4,571,998	+				+0.3
4,571,998	+				+0.5
4,571,998	+				-2.8
4,571,998	+				-1.9
4,571,998	+				+1.0
4,571,998	+				-0.2
4,571,998	+				+0.9
4,571,998	+				+1.1
4,571,998	+				-1.3
4,571,998	+				-0.0
4,571,998	+				+1.9
4,571,998	+				-1.3
4,571,999	-				-1.7
4,571,999	-				+0.9
4,571,999	-				-0.6
4,571,999	-				+0.1
4,571,999	-				-1.1
4,572,047	+		PFLU_RS20190	0.11	-0.8
4,572,048	-		PFLU_RS20190	0.12	+0.7
4,572,063	+		PFLU_RS20190	0.16	+0.3
4,572,063	+		PFLU_RS20190	0.16	+1.9
4,572,063	+		PFLU_RS20190	0.16	+1.5
4,572,064	-		PFLU_RS20190	0.16	-0.0
4,572,064	-		PFLU_RS20190	0.16	+0.0
4,572,064	-		PFLU_RS20190	0.16	-0.4
4,572,064	-		PFLU_RS20190	0.16	+3.3
4,572,139	+		PFLU_RS20190	0.37	+1.5
4,572,139	+		PFLU_RS20190	0.37	-0.7
4,572,139	+		PFLU_RS20190	0.37	-1.5
4,572,139	+		PFLU_RS20190	0.37	+0.5
4,572,139	+		PFLU_RS20190	0.37	-1.1
4,572,139	+		PFLU_RS20190	0.37	+0.9
4,572,139	+		PFLU_RS20190	0.37	+0.7
4,572,139	+		PFLU_RS20190	0.37	-0.1
4,572,139	+		PFLU_RS20190	0.37	+1.3
4,572,139	+		PFLU_RS20190	0.37	-2.0
4,572,139	+		PFLU_RS20190	0.37	+1.9
4,572,139	+		PFLU_RS20190	0.37	-1.1
4,572,139	+		PFLU_RS20190	0.37	+1.6
4,572,140	-		PFLU_RS20190	0.38	+0.1
4,572,140	-		PFLU_RS20190	0.38	-1.3
4,572,140	-		PFLU_RS20190	0.38	-0.9
4,572,140	-		PFLU_RS20190	0.38	+2.2
4,572,140	-		PFLU_RS20190	0.38	-1.1
4,572,140	-		PFLU_RS20190	0.38	-1.4
4,572,140	-		PFLU_RS20190	0.38	+0.6
4,572,140	-		PFLU_RS20190	0.38	+0.9
4,572,140	-		PFLU_RS20190	0.38	-0.8
4,572,140	-		PFLU_RS20190	0.38	-1.9
4,572,140	-		PFLU_RS20190	0.38	+1.4
4,572,140	-		PFLU_RS20190	0.38	+0.3
4,572,244	+		PFLU_RS20190	0.67	+1.3
4,572,244	+		PFLU_RS20190	0.67	+0.6
4,572,244	+		PFLU_RS20190	0.67	+0.1
4,572,244	+		PFLU_RS20190	0.67	-0.4
4,572,244	+		PFLU_RS20190	0.67	+1.6
4,572,244	+		PFLU_RS20190	0.67	-2.0
4,572,245	-		PFLU_RS20190	0.67	+0.1
4,572,245	-		PFLU_RS20190	0.67	-0.7
4,572,245	-		PFLU_RS20190	0.67	-1.1
4,572,245	-		PFLU_RS20190	0.67	-0.6
4,572,245	-		PFLU_RS20190	0.67	+2.8
4,572,245	-		PFLU_RS20190	0.67	-3.7
4,572,245	-		PFLU_RS20190	0.67	-0.6
4,572,248	+		PFLU_RS20190	0.68	+1.5
4,572,248	+		PFLU_RS20190	0.68	+1.3
4,572,248	+		PFLU_RS20190	0.68	-3.0
4,572,248	+		PFLU_RS20190	0.68	+0.1
4,572,248	+		PFLU_RS20190	0.68	-0.7
4,572,248	+		PFLU_RS20190	0.68	+0.8
4,572,248	+		PFLU_RS20190	0.68	+0.2
4,572,248	+		PFLU_RS20190	0.68	+2.9
4,572,248	+		PFLU_RS20190	0.68	+1.9
4,572,248	+		PFLU_RS20190	0.68	+0.9
4,572,248	+		PFLU_RS20190	0.68	+1.1
4,572,248	+		PFLU_RS20190	0.68	+0.5
4,572,248	+		PFLU_RS20190	0.68	-3.0
4,572,248	+		PFLU_RS20190	0.68	+3.3
4,572,249	-		PFLU_RS20190	0.68	-1.7
4,572,249	-		PFLU_RS20190	0.68	-1.1
4,572,249	-		PFLU_RS20190	0.68	+0.7
4,572,249	-		PFLU_RS20190	0.68	+1.4
4,572,249	-		PFLU_RS20190	0.68	+1.5
4,572,249	-		PFLU_RS20190	0.68	+1.6
4,572,249	-		PFLU_RS20190	0.68	-0.8
4,572,249	-		PFLU_RS20190	0.68	+1.9
4,572,249	-		PFLU_RS20190	0.68	+1.9
4,572,249	-		PFLU_RS20190	0.68	+0.1
4,572,249	-		PFLU_RS20190	0.68	+1.8
4,572,249	-		PFLU_RS20190	0.68	-0.1
4,572,365	+		PFLU_RS30960	0.18	+1.5
4,572,365	+		PFLU_RS30960	0.18	-3.2
4,572,365	+		PFLU_RS30960	0.18	+0.3
4,572,365	+		PFLU_RS30960	0.18	-2.2
4,572,365	+		PFLU_RS30960	0.18	+0.7
4,572,365	+		PFLU_RS30960	0.18	+2.0
4,572,365	+		PFLU_RS30960	0.18	-3.2
4,572,365	+		PFLU_RS30960	0.18	+1.2
4,572,366	-		PFLU_RS30960	0.19	-1.6
4,572,366	-		PFLU_RS30960	0.19	+2.4
4,572,366	-		PFLU_RS30960	0.19	-0.3
4,572,366	-		PFLU_RS30960	0.19	-2.7
4,572,366	-		PFLU_RS30960	0.19	+2.5
4,572,366	-		PFLU_RS30960	0.19	+1.7
4,572,366	-		PFLU_RS30960	0.19	+2.5
4,572,366	-		PFLU_RS30960	0.19	+0.7
4,572,366	-		PFLU_RS30960	0.19	+1.1
4,572,366	-		PFLU_RS30960	0.19	-0.4
4,572,366	-		PFLU_RS30960	0.19	-0.1
4,572,366	-		PFLU_RS30960	0.19	-1.3
4,572,366	-		PFLU_RS30960	0.19	+0.6
4,572,366	-		PFLU_RS30960	0.19	-0.3
4,572,366	-		PFLU_RS30960	0.19	+2.4
4,572,424	-		PFLU_RS30960	0.66	+1.1
4,572,424	-		PFLU_RS30960	0.66	+1.8
4,572,493	+				-1.0
4,572,493	+				+0.9
4,572,493	+				-1.1
4,572,493	+				+0.8
4,572,493	+				+0.1
4,572,493	+				-0.2
4,572,493	+				+0.0
4,572,493	+				+1.9
4,572,493	+				+0.4
4,572,493	+				+1.2
4,572,493	+				+1.3
4,572,493	+				+0.8
4,572,493	+				-0.1
4,572,493	+				+0.4
4,572,493	+				+3.2
4,572,493	+				+0.4
4,572,493	+				+0.4
4,572,493	+				-1.6
4,572,494	-				+1.6
4,572,494	-				+0.8
4,572,494	-				+0.8
4,572,494	-				+0.5
4,572,494	-				-1.8
4,572,494	-				-0.4
4,572,494	-				-2.3
4,572,494	-				+1.0
4,572,494	-				-1.4
4,572,494	-				+1.9
4,572,494	-				+0.7
4,572,494	-				-1.7
4,572,494	-				+1.2
4,572,494	-				-0.1
4,572,494	-				+0.5
4,572,504	+				+0.9
4,572,504	+				+0.9
4,572,577	+				+2.6
4,572,577	+				+0.9
4,572,578	-				-1.6
4,572,578	-				+1.4
4,572,578	-				-1.9
4,572,578	-				-0.0
4,572,583	+				+1.3
4,572,583	+				-0.2
4,572,583	+				-0.2
4,572,584	-				+0.5
4,572,584	-				-1.6
4,572,584	-				+2.2
4,572,584	-				+2.5
4,572,614	+				+1.3
4,572,614	+				+1.7
4,572,614	+				-1.1
4,572,614	+				+1.8
4,572,614	+				+2.2
4,572,614	+				+0.2
4,572,615	-				+1.2
4,572,615	-				+0.1
4,572,615	-				-1.1
4,572,615	-				+1.0
4,572,615	-				+1.5
4,572,615	-				-0.3
4,572,615	-				+2.2
4,572,618	+				-1.7
4,572,618	+				-2.5
4,572,619	-				-1.6
4,572,619	-				-2.4
4,572,633	+				-1.6
4,572,633	+				+1.2
4,572,633	+				-1.8
4,572,633	+				+0.9
4,572,633	+				+0.6
4,572,634	-				-1.6
4,572,634	-				+1.0
4,572,634	-				-2.1
4,572,634	-				+0.3
4,572,643	+				-0.3
4,572,644	-				+2.0
4,572,644	-				+2.1
4,572,708	+		PFLU_RS20195	0.23	-1.2
4,572,708	+		PFLU_RS20195	0.23	-0.9
4,572,709	-		PFLU_RS20195	0.23	+0.1
4,572,772	+		PFLU_RS20195	0.43	+1.6
4,572,772	+		PFLU_RS20195	0.43	+0.0
4,572,772	+		PFLU_RS20195	0.43	-3.0
4,572,772	+		PFLU_RS20195	0.43	+1.7
4,572,814	+		PFLU_RS20195	0.57	-0.7
4,572,814	+		PFLU_RS20195	0.57	-2.8
4,572,815	-		PFLU_RS20195	0.57	+1.1
4,572,826	+		PFLU_RS20195	0.61	+1.2
4,572,826	+		PFLU_RS20195	0.61	-2.7
4,572,826	+		PFLU_RS20195	0.61	-0.9
4,572,826	+		PFLU_RS20195	0.61	+1.4
4,572,826	+		PFLU_RS20195	0.61	-2.0
4,572,827	-		PFLU_RS20195	0.61	+2.0
4,572,827	-		PFLU_RS20195	0.61	-1.8
4,572,827	-		PFLU_RS20195	0.61	+1.6
4,572,853	-		PFLU_RS20195	0.70	-2.4
4,572,868	+		PFLU_RS20195	0.74	-1.6
4,572,868	+		PFLU_RS20195	0.74	-2.5
4,572,868	+		PFLU_RS20195	0.74	+1.3
4,572,868	+		PFLU_RS20195	0.74	+1.3
4,572,869	-		PFLU_RS20195	0.75	+1.5
4,572,876	+		PFLU_RS20195	0.77	+0.8
4,572,877	-		PFLU_RS20195	0.77	-2.7
4,572,877	-		PFLU_RS20195	0.77	+0.8
4,572,877	-		PFLU_RS20195	0.77	+0.6
4,572,944	+				-2.0
4,572,944	+				+0.3
4,572,945	-				+0.3
4,572,947	+				-1.1
4,572,948	-				+1.7
4,572,948	-				-0.7
4,572,961	+				-1.6
4,572,962	-				+1.2
4,572,999	+				+0.2
4,572,999	+				+1.7
4,573,000	-				-0.1
4,573,000	-				-0.1
4,573,016	+				-1.9
4,573,054	+				+1.8
4,573,054	+				+2.1
4,573,054	+				-1.1
4,573,054	+				+1.0
4,573,054	+				-1.9
4,573,054	+				-1.1
4,573,054	+				+1.9
4,573,054	+				-1.8
4,573,054	+				-1.6
4,573,055	-				-0.9
4,573,055	-				+2.1
4,573,055	-				-1.3
4,573,055	-				-0.3
4,573,055	-				+0.4
4,573,055	-				+1.6
4,573,055	-				-0.2
4,573,055	-				+2.1
4,573,055	-				-1.1
4,573,055	-				-1.4
4,573,055	-				-1.4
4,573,055	-				+1.0
4,573,055	-				+1.2
4,573,069	-				-0.5
4,573,136	-		PFLU_RS30965	0.23	+0.4
4,573,136	-		PFLU_RS30965	0.23	-1.3
4,573,149	+		PFLU_RS30965	0.27	-0.1
4,573,163	+		PFLU_RS30965	0.31	+1.9
4,573,163	+		PFLU_RS30965	0.31	-0.1
4,573,164	-		PFLU_RS30965	0.32	+0.3
4,573,174	+		PFLU_RS30965	0.35	+0.1
4,573,197	+		PFLU_RS30965	0.42	+0.3
4,573,197	+		PFLU_RS30965	0.42	-0.9
4,573,197	+		PFLU_RS30965	0.42	-0.4
4,573,197	+		PFLU_RS30965	0.42	-0.7
4,573,198	-		PFLU_RS30965	0.42	+0.2
4,573,198	-		PFLU_RS30965	0.42	-2.7
4,573,208	-		PFLU_RS30965	0.45	-1.9
4,573,254	+		PFLU_RS30965	0.60	-2.5
4,573,254	+		PFLU_RS30965	0.60	-0.4
4,573,255	-		PFLU_RS30965	0.60	+0.9
4,573,255	-		PFLU_RS30965	0.60	-1.9
4,573,255	-		PFLU_RS30965	0.60	-0.1
4,573,255	-		PFLU_RS30965	0.60	+0.5
4,573,255	-		PFLU_RS30965	0.60	+0.9
4,573,255	-		PFLU_RS30965	0.60	+0.4
4,573,255	-		PFLU_RS30965	0.60	-2.7
4,573,255	-		PFLU_RS30965	0.60	+0.4
4,573,255	-		PFLU_RS30965	0.60	-1.3
4,573,255	-		PFLU_RS30965	0.60	+0.7
4,573,285	+		PFLU_RS30965	0.69	-0.7
4,573,285	+		PFLU_RS30965	0.69	+0.4
4,573,285	+		PFLU_RS30965	0.69	+2.5
4,573,285	+		PFLU_RS30965	0.69	-1.8
4,573,285	+		PFLU_RS30965	0.69	-1.8
4,573,285	+		PFLU_RS30965	0.69	+1.4
4,573,285	+		PFLU_RS30965	0.69	+3.9
4,573,285	+		PFLU_RS30965	0.69	-1.3
4,573,285	+		PFLU_RS30965	0.69	-0.4
4,573,285	+		PFLU_RS30965	0.69	-2.1
4,573,285	+		PFLU_RS30965	0.69	+1.5
4,573,285	+		PFLU_RS30965	0.69	-2.6
4,573,285	+		PFLU_RS30965	0.69	+1.6
4,573,285	+		PFLU_RS30965	0.69	+1.5
4,573,285	+		PFLU_RS30965	0.69	+0.6
4,573,286	-		PFLU_RS30965	0.69	-1.7
4,573,286	-		PFLU_RS30965	0.69	+2.0
4,573,286	-		PFLU_RS30965	0.69	+1.8
4,573,286	-		PFLU_RS30965	0.69	+0.6
4,573,286	-		PFLU_RS30965	0.69	+0.3
4,573,286	-		PFLU_RS30965	0.69	-0.3
4,573,286	-		PFLU_RS30965	0.69	-2.3
4,573,286	-		PFLU_RS30965	0.69	+0.8
4,573,286	-		PFLU_RS30965	0.69	-0.4
4,573,286	-		PFLU_RS30965	0.69	-1.6
4,573,286	-		PFLU_RS30965	0.69	-2.4
4,573,286	-		PFLU_RS30965	0.69	-2.8
4,573,286	-		PFLU_RS30965	0.69	+0.1
4,573,286	-		PFLU_RS30965	0.69	+0.9
4,573,286	-		PFLU_RS30965	0.69	+0.2
4,573,286	-		PFLU_RS30965	0.69	+0.3
4,573,286	-		PFLU_RS30965	0.69	-0.3
4,573,286	-		PFLU_RS30965	0.69	-2.7
4,573,286	-		PFLU_RS30965	0.69	-0.7
4,573,287	+		PFLU_RS30965	0.70	-0.2
4,573,288	-		PFLU_RS30965	0.70	+1.6
4,573,288	-		PFLU_RS30965	0.70	-2.5
4,573,350	-		PFLU_RS30965	0.89	+0.9
4,573,350	-		PFLU_RS30965	0.89	+1.1
4,573,351	+		PFLU_RS30965	0.90	-1.3
4,573,351	+		PFLU_RS30965	0.90	-0.3
4,573,352	-				+2.4
4,573,359	+				+2.1
4,573,359	+				+0.2
4,573,359	+				-0.4
4,573,359	+				+1.6
4,573,360	-				-0.4
4,573,360	-				-2.2
4,573,360	-				-0.7