Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004825

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,035,824	+		ABIE53_004824	0.55	+1.7
1,035,825	-		ABIE53_004824	0.55	-1.6
1,035,986	+		ABIE53_004824	0.63	+0.7
1,036,018	+		ABIE53_004824	0.65	+1.0
1,036,030	+		ABIE53_004824	0.65	-0.3
1,036,031	-		ABIE53_004824	0.65	+2.9
1,036,031	-		ABIE53_004824	0.65	+1.3
1,036,057	+		ABIE53_004824	0.67	+2.0
1,036,058	-		ABIE53_004824	0.67	-1.8
1,036,058	-		ABIE53_004824	0.67	-1.3
1,036,081	-		ABIE53_004824	0.68	-1.6
1,036,081	-		ABIE53_004824	0.68	+1.8
1,036,171	+		ABIE53_004824	0.73	+0.6
1,036,172	-		ABIE53_004824	0.73	-2.6
1,036,172	-		ABIE53_004824	0.73	-1.6
1,036,303	+		ABIE53_004824	0.80	-2.1
1,036,304	-		ABIE53_004824	0.80	+4.9
1,036,304	-		ABIE53_004824	0.80	+2.2
1,036,460	-		ABIE53_004824	0.88	-3.8
1,036,660	+				-0.1
1,036,661	-				-1.6
1,036,661	-				-0.8
1,036,661	-				-1.1
1,036,861	+				-1.6
1,036,861	+				+2.0
1,036,862	-				-0.5
1,036,940	-				-1.8
1,036,977	+		ABIE53_004825	0.11	-1.9
1,036,977	+		ABIE53_004825	0.11	-3.5
1,036,978	-		ABIE53_004825	0.11	+0.2
1,037,020	+		ABIE53_004825	0.13	-2.7
1,037,020	+		ABIE53_004825	0.13	+2.2
1,037,064	+		ABIE53_004825	0.15	+0.7
1,037,064	+		ABIE53_004825	0.15	-1.3
1,037,064	+		ABIE53_004825	0.15	-0.8
1,037,065	-		ABIE53_004825	0.15	+1.8
1,037,065	-		ABIE53_004825	0.15	-0.9
1,037,309	+		ABIE53_004825	0.26	+0.2
1,037,309	+		ABIE53_004825	0.26	-2.1
1,037,309	+		ABIE53_004825	0.26	-1.3
1,037,309	+		ABIE53_004825	0.26	-1.3
1,037,309	+		ABIE53_004825	0.26	+0.2
1,037,310	-		ABIE53_004825	0.26	+0.6
1,037,310	-		ABIE53_004825	0.26	+0.0
1,037,310	-		ABIE53_004825	0.26	+1.0
1,037,310	-		ABIE53_004825	0.26	+0.1
1,037,334	+		ABIE53_004825	0.27	+0.5
1,037,334	+		ABIE53_004825	0.27	+3.0
1,037,334	+		ABIE53_004825	0.27	-0.8
1,037,931	-		ABIE53_004825	0.54	-1.1
1,038,041	+		ABIE53_004825	0.59	-1.6
1,038,041	+		ABIE53_004825	0.59	-0.3
1,038,041	+		ABIE53_004825	0.59	-1.1
1,038,041	+		ABIE53_004825	0.59	-0.8
1,038,044	+		ABIE53_004825	0.59	-0.8
1,038,044	+		ABIE53_004825	0.59	+1.7
1,038,044	+		ABIE53_004825	0.59	+0.2
1,038,045	-		ABIE53_004825	0.59	-1.6
1,038,114	-		ABIE53_004825	0.63	-1.6
1,038,114	-		ABIE53_004825	0.63	+1.8
1,038,200	+		ABIE53_004825	0.66	-1.8
1,038,200	+		ABIE53_004825	0.66	-0.9
1,038,201	-		ABIE53_004825	0.67	-0.8
1,038,236	+		ABIE53_004825	0.68	+1.2
1,038,245	+		ABIE53_004825	0.69	-2.1
1,038,346	-		ABIE53_004825	0.73	-2.1
1,038,437	+		ABIE53_004825	0.77	+1.7
1,038,437	+		ABIE53_004825	0.77	+0.2
1,038,438	-		ABIE53_004825	0.77	+1.1
1,038,438	-		ABIE53_004825	0.77	+0.7
1,038,438	-		ABIE53_004825	0.77	+1.2
1,038,632	+		ABIE53_004825	0.86	-1.8
1,038,633	-		ABIE53_004825	0.86	-0.8
1,038,687	-		ABIE53_004825	0.89	-1.3
1,038,710	+		ABIE53_004825	0.90	+0.9
1,038,868	+				-1.3
1,038,868	+				+0.2
1,038,868	+				-2.5
1,038,868	+				+0.7
1,038,868	+				+1.0
1,038,868	+				+0.3
1,038,868	+				+2.1
1,038,869	-				-1.1
1,038,869	-				-0.3
1,038,869	-				-0.8
1,038,869	-				+2.7
1,038,869	-				+1.3
1,038,869	-				-1.6
1,039,215	-				-4.2
1,039,349	+		ABIE53_004826	0.12	+0.2
1,039,442	+		ABIE53_004826	0.16	-3.2
1,039,442	+		ABIE53_004826	0.16	-1.9
1,039,442	+		ABIE53_004826	0.16	-3.5
1,039,442	+		ABIE53_004826	0.16	-1.9
1,039,442	+		ABIE53_004826	0.16	-4.6
1,039,607	+		ABIE53_004826	0.23	-2.1
1,039,608	-		ABIE53_004826	0.23	-3.1
1,039,638	+		ABIE53_004826	0.25	-0.3
1,039,638	+		ABIE53_004826	0.25	-2.3
1,039,638	+		ABIE53_004826	0.25	-1.6
1,039,638	+		ABIE53_004826	0.25	+0.2
1,039,638	+		ABIE53_004826	0.25	-4.5
1,039,638	+		ABIE53_004826	0.25	-1.1
1,039,639	-		ABIE53_004826	0.25	-1.6
1,039,639	-		ABIE53_004826	0.25	+3.1
1,039,639	-		ABIE53_004826	0.25	+0.4
1,039,721	+		ABIE53_004826	0.29	-3.5
1,039,727	+		ABIE53_004826	0.29	-3.3
1,039,727	+		ABIE53_004826	0.29	-1.6
1,039,727	+		ABIE53_004826	0.29	+1.2
1,039,727	+		ABIE53_004826	0.29	-4.4
1,039,728	-		ABIE53_004826	0.29	-3.2
1,039,728	-		ABIE53_004826	0.29	-2.8
1,039,728	-		ABIE53_004826	0.29	-1.8
1,039,728	-		ABIE53_004826	0.29	-0.8
1,039,728	-		ABIE53_004826	0.29	-1.1
1,039,728	-		ABIE53_004826	0.29	-0.3
1,039,760	+		ABIE53_004826	0.30	-1.9
1,039,761	-		ABIE53_004826	0.30	-2.1
1,039,761	-		ABIE53_004826	0.30	-2.3
1,039,761	-		ABIE53_004826	0.30	-2.1
1,039,761	-		ABIE53_004826	0.30	+2.2
1,039,770	-		ABIE53_004826	0.31	-1.1
1,039,790	+		ABIE53_004826	0.32	-0.3
1,039,790	+		ABIE53_004826	0.32	-0.8
1,039,790	+		ABIE53_004826	0.32	-2.2
1,039,790	+		ABIE53_004826	0.32	-2.8
1,039,790	+		ABIE53_004826	0.32	-2.1
1,039,790	+		ABIE53_004826	0.32	-4.5
1,039,790	+		ABIE53_004826	0.32	-0.3
1,039,791	-		ABIE53_004826	0.32	-2.5
1,039,791	-		ABIE53_004826	0.32	-1.9
1,039,791	-		ABIE53_004826	0.32	-1.3
1,039,791	-		ABIE53_004826	0.32	-0.8
1,039,791	-		ABIE53_004826	0.32	+0.2
1,039,791	-		ABIE53_004826	0.32	+1.2
1,039,928	+		ABIE53_004826	0.38	-2.6
1,039,928	+		ABIE53_004826	0.38	-4.2
1,039,928	+		ABIE53_004826	0.38	-1.1
1,039,928	+		ABIE53_004826	0.38	-2.3
1,039,928	+		ABIE53_004826	0.38	-2.7
1,039,929	-		ABIE53_004826	0.38	-2.8
1,039,929	-		ABIE53_004826	0.38	+1.1
1,039,929	-		ABIE53_004826	0.38	-3.5
1,039,929	-		ABIE53_004826	0.38	-1.8
1,039,929	-		ABIE53_004826	0.38	-2.2