Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004621 and ABIE53_004622 are separated by 54 nucleotides ABIE53_004622 and ABIE53_004623 are separated by 1 nucleotides ABIE53_004623 and ABIE53_004624 are separated by 430 nucleotides
ABIE53_004621: ABIE53_004621 - phenylpropionate dioxygenase-like ring-hydroxylating dioxygenase large terminal subunit, at 805,912 to 806,991
_004621
ABIE53_004622: ABIE53_004622 - hypothetical protein, at 807,046 to 807,357
_004622
ABIE53_004623: ABIE53_004623 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit, at 807,359 to 807,673
_004623
ABIE53_004624: ABIE53_004624 - putative porin, at 808,104 to 809,177
_004624
Position (kb) 807
808 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 806.450 kb on + strand, within ABIE53_004621 at 806.495 kb on + strand, within ABIE53_004621 at 806.496 kb on - strand, within ABIE53_004621 at 806.496 kb on - strand, within ABIE53_004621 at 806.535 kb on - strand, within ABIE53_004621 at 806.583 kb on + strand, within ABIE53_004621 at 806.694 kb on + strand, within ABIE53_004621 at 806.694 kb on + strand, within ABIE53_004621 at 806.694 kb on + strand, within ABIE53_004621 at 806.913 kb on - strand at 806.913 kb on - strand at 806.918 kb on + strand at 806.918 kb on + strand at 806.918 kb on + strand at 806.919 kb on - strand at 806.919 kb on - strand at 806.919 kb on - strand at 806.942 kb on + strand at 806.942 kb on + strand at 806.942 kb on + strand at 806.942 kb on + strand at 807.047 kb on + strand at 807.048 kb on - strand at 807.405 kb on + strand, within ABIE53_004623 at 807.405 kb on + strand, within ABIE53_004623 at 807.405 kb on + strand, within ABIE53_004623 at 807.405 kb on + strand, within ABIE53_004623 at 807.406 kb on - strand, within ABIE53_004623 at 807.406 kb on - strand, within ABIE53_004623 at 807.528 kb on + strand, within ABIE53_004623 at 807.528 kb on + strand, within ABIE53_004623 at 807.528 kb on + strand, within ABIE53_004623 at 807.529 kb on - strand, within ABIE53_004623 at 807.529 kb on - strand, within ABIE53_004623 at 807.529 kb on - strand, within ABIE53_004623 at 807.558 kb on + strand, within ABIE53_004623 at 807.558 kb on + strand, within ABIE53_004623 at 807.558 kb on + strand, within ABIE53_004623 at 807.558 kb on + strand, within ABIE53_004623 at 807.558 kb on + strand, within ABIE53_004623 at 807.558 kb on + strand, within ABIE53_004623 at 807.558 kb on + strand, within ABIE53_004623 at 807.559 kb on - strand, within ABIE53_004623 at 807.579 kb on + strand, within ABIE53_004623 at 807.579 kb on + strand, within ABIE53_004623 at 807.579 kb on + strand, within ABIE53_004623 at 807.579 kb on + strand, within ABIE53_004623 at 807.580 kb on - strand, within ABIE53_004623 at 807.738 kb on + strand at 808.183 kb on - strand at 808.183 kb on - strand at 808.209 kb on + strand at 808.209 kb on + strand at 808.210 kb on - strand at 808.210 kb on - strand at 808.210 kb on - strand at 808.210 kb on - strand at 808.344 kb on + strand, within ABIE53_004624 at 808.345 kb on - strand, within ABIE53_004624 at 808.345 kb on - strand, within ABIE53_004624 at 808.345 kb on - strand, within ABIE53_004624 at 808.510 kb on - strand, within ABIE53_004624
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 806,450 + ABIE53_004621 0.50 -0.3 806,495 + ABIE53_004621 0.54 -0.3 806,496 - ABIE53_004621 0.54 -1.0 806,496 - ABIE53_004621 0.54 +1.8 806,535 - ABIE53_004621 0.58 -0.7 806,583 + ABIE53_004621 0.62 -2.7 806,694 + ABIE53_004621 0.72 -0.8 806,694 + ABIE53_004621 0.72 +0.2 806,694 + ABIE53_004621 0.72 -1.5 806,913 - +0.3 806,913 - +2.2 806,918 + -0.3 806,918 + +2.1 806,918 + -0.8 806,919 - -0.3 806,919 - -0.3 806,919 - +0.6 806,942 + -1.9 806,942 + +1.3 806,942 + +2.3 806,942 + -0.7 807,047 + -1.0 807,048 - +0.3 807,405 + ABIE53_004623 0.15 -1.7 807,405 + ABIE53_004623 0.15 -0.3 807,405 + ABIE53_004623 0.15 +1.4 807,405 + ABIE53_004623 0.15 +0.3 807,406 - ABIE53_004623 0.15 +2.2 807,406 - ABIE53_004623 0.15 +1.3 807,528 + ABIE53_004623 0.54 +0.3 807,528 + ABIE53_004623 0.54 -0.3 807,528 + ABIE53_004623 0.54 +1.6 807,529 - ABIE53_004623 0.54 +1.5 807,529 - ABIE53_004623 0.54 -2.3 807,529 - ABIE53_004623 0.54 -1.5 807,558 + ABIE53_004623 0.63 +0.3 807,558 + ABIE53_004623 0.63 -0.5 807,558 + ABIE53_004623 0.63 +1.0 807,558 + ABIE53_004623 0.63 +1.3 807,558 + ABIE53_004623 0.63 +2.7 807,558 + ABIE53_004623 0.63 -2.8 807,558 + ABIE53_004623 0.63 -0.3 807,559 - ABIE53_004623 0.63 -0.3 807,579 + ABIE53_004623 0.70 +1.0 807,579 + ABIE53_004623 0.70 +1.2 807,579 + ABIE53_004623 0.70 -0.3 807,579 + ABIE53_004623 0.70 -1.5 807,580 - ABIE53_004623 0.70 -1.3 807,738 + +1.1 808,183 - -3.1 808,183 - +1.3 808,209 + +2.1 808,209 + -0.7 808,210 - +0.3 808,210 - -2.6 808,210 - -1.3 808,210 - +1.7 808,344 + ABIE53_004624 0.22 +2.6 808,345 - ABIE53_004624 0.22 +1.3 808,345 - ABIE53_004624 0.22 +3.6 808,345 - ABIE53_004624 0.22 -1.0 808,510 - ABIE53_004624 0.38 -0.4
Or see this region's nucleotide sequence