Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003099

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
3,500,095	-		ABIE53_003098	0.25	+0.8
3,500,095	-		ABIE53_003098	0.25	+0.9
3,500,130	+		ABIE53_003098	0.28	+0.8
3,500,130	+		ABIE53_003098	0.28	+2.4
3,500,130	+		ABIE53_003098	0.28	+2.0
3,500,130	+		ABIE53_003098	0.28	+0.8
3,500,130	+		ABIE53_003098	0.28	+1.0
3,500,130	+		ABIE53_003098	0.28	+1.0
3,500,130	+		ABIE53_003098	0.28	-0.3
3,500,130	+		ABIE53_003098	0.28	-2.3
3,500,130	+		ABIE53_003098	0.28	-0.3
3,500,131	-		ABIE53_003098	0.28	+2.9
3,500,131	-		ABIE53_003098	0.28	-1.3
3,500,131	-		ABIE53_003098	0.28	-2.8
3,500,131	-		ABIE53_003098	0.28	+0.8
3,500,131	-		ABIE53_003098	0.28	+1.6
3,500,131	-		ABIE53_003098	0.28	+1.2
3,500,131	-		ABIE53_003098	0.28	+0.4
3,500,131	-		ABIE53_003098	0.28	+1.5
3,500,221	+		ABIE53_003098	0.35	+0.3
3,500,222	-		ABIE53_003098	0.35	+2.5
3,500,222	-		ABIE53_003098	0.35	-1.5
3,500,222	-		ABIE53_003098	0.35	+0.7
3,500,298	+		ABIE53_003098	0.41	-0.7
3,500,298	+		ABIE53_003098	0.41	+0.7
3,500,298	+		ABIE53_003098	0.41	+0.7
3,500,298	+		ABIE53_003098	0.41	+0.9
3,500,299	-		ABIE53_003098	0.41	+2.3
3,500,299	-		ABIE53_003098	0.41	+2.9
3,500,299	-		ABIE53_003098	0.41	+2.4
3,500,299	-		ABIE53_003098	0.41	+2.3
3,500,299	-		ABIE53_003098	0.41	+0.8
3,500,304	+		ABIE53_003098	0.41	+3.0
3,500,304	+		ABIE53_003098	0.41	-3.3
3,500,304	+		ABIE53_003098	0.41	-2.5
3,500,304	+		ABIE53_003098	0.41	-0.3
3,500,304	+		ABIE53_003098	0.41	-0.7
3,500,305	-		ABIE53_003098	0.41	-0.3
3,500,305	-		ABIE53_003098	0.41	+2.9
3,500,305	-		ABIE53_003098	0.41	+0.9
3,500,305	-		ABIE53_003098	0.41	-2.1
3,500,305	-		ABIE53_003098	0.41	-1.7
3,500,306	+		ABIE53_003098	0.41	+0.5
3,500,306	+		ABIE53_003098	0.41	+0.7
3,500,306	+		ABIE53_003098	0.41	-1.1
3,500,306	+		ABIE53_003098	0.41	-0.7
3,500,306	+		ABIE53_003098	0.41	+1.0
3,500,306	+		ABIE53_003098	0.41	-0.7
3,500,307	-		ABIE53_003098	0.41	+2.1
3,500,307	-		ABIE53_003098	0.41	+0.3
3,500,307	-		ABIE53_003098	0.41	+0.8
3,500,307	-		ABIE53_003098	0.41	-1.3
3,500,307	-		ABIE53_003098	0.41	+2.5
3,500,400	+		ABIE53_003098	0.49	+0.3
3,500,400	+		ABIE53_003098	0.49	+1.8
3,500,401	-		ABIE53_003098	0.49	-0.7
3,500,401	-		ABIE53_003098	0.49	+0.3
3,500,457	+		ABIE53_003098	0.53	+0.9
3,500,457	+		ABIE53_003098	0.53	+1.6
3,500,457	+		ABIE53_003098	0.53	+1.5
3,500,457	+		ABIE53_003098	0.53	+1.0
3,500,457	+		ABIE53_003098	0.53	-1.1
3,500,457	+		ABIE53_003098	0.53	+3.9
3,500,457	+		ABIE53_003098	0.53	+2.7
3,500,458	-		ABIE53_003098	0.53	+0.6
3,500,458	-		ABIE53_003098	0.53	+1.5
3,500,458	-		ABIE53_003098	0.53	-1.1
3,500,458	-		ABIE53_003098	0.53	+2.9
3,500,458	-		ABIE53_003098	0.53	+0.3
3,500,458	-		ABIE53_003098	0.53	+0.2
3,500,458	-		ABIE53_003098	0.53	-0.5
3,500,476	+		ABIE53_003098	0.55	-0.3
3,500,476	+		ABIE53_003098	0.55	-2.1
3,500,476	+		ABIE53_003098	0.55	-0.3
3,500,477	-		ABIE53_003098	0.55	+0.8
3,500,477	-		ABIE53_003098	0.55	+0.3
3,500,477	-		ABIE53_003098	0.55	+0.3
3,500,481	+		ABIE53_003098	0.55	+0.5
3,500,481	+		ABIE53_003098	0.55	+2.6
3,500,481	+		ABIE53_003098	0.55	+0.9
3,500,481	+		ABIE53_003098	0.55	+1.0
3,500,481	+		ABIE53_003098	0.55	+0.8
3,500,481	+		ABIE53_003098	0.55	-3.4
3,500,482	-		ABIE53_003098	0.55	-2.8
3,500,482	-		ABIE53_003098	0.55	+0.6
3,500,482	-		ABIE53_003098	0.55	-1.7
3,500,540	+		ABIE53_003098	0.60	+0.3
3,500,540	+		ABIE53_003098	0.60	+0.9
3,500,540	+		ABIE53_003098	0.60	+1.6
3,500,541	-		ABIE53_003098	0.60	+1.3
3,500,541	-		ABIE53_003098	0.60	+1.4
3,500,541	-		ABIE53_003098	0.60	+0.3
3,500,541	-		ABIE53_003098	0.60	+3.0
3,500,610	+		ABIE53_003098	0.65	+0.3
3,500,610	+		ABIE53_003098	0.65	-1.7
3,500,610	+		ABIE53_003098	0.65	+1.3
3,500,611	-		ABIE53_003098	0.65	-1.7
3,500,611	-		ABIE53_003098	0.65	+4.1
3,500,611	-		ABIE53_003098	0.65	-0.7
3,500,611	-		ABIE53_003098	0.65	-1.4
3,500,611	-		ABIE53_003098	0.65	+1.4
3,500,637	+		ABIE53_003098	0.67	+2.1
3,500,637	+		ABIE53_003098	0.67	-0.1
3,500,637	+		ABIE53_003098	0.67	+1.7
3,500,638	-		ABIE53_003098	0.67	+1.6
3,500,639	+		ABIE53_003098	0.67	+1.2
3,500,639	+		ABIE53_003098	0.67	-2.3
3,500,639	+		ABIE53_003098	0.67	+0.3
3,500,639	+		ABIE53_003098	0.67	+2.0
3,500,639	+		ABIE53_003098	0.67	-1.9
3,500,639	+		ABIE53_003098	0.67	+2.8
3,500,639	+		ABIE53_003098	0.67	+0.9
3,500,639	+		ABIE53_003098	0.67	+2.9
3,500,640	-		ABIE53_003098	0.68	+1.6
3,500,640	-		ABIE53_003098	0.68	+2.1
3,500,727	+		ABIE53_003098	0.74	-1.1
3,500,727	+		ABIE53_003098	0.74	+1.5
3,500,728	-		ABIE53_003098	0.74	+0.0
3,500,751	+		ABIE53_003098	0.76	+2.0
3,500,751	+		ABIE53_003098	0.76	-0.1
3,500,751	+		ABIE53_003098	0.76	-0.9
3,500,752	-		ABIE53_003098	0.76	-1.1
3,500,752	-		ABIE53_003098	0.76	+0.3
3,500,752	-		ABIE53_003098	0.76	-1.5
3,500,773	+		ABIE53_003098	0.78	+1.3
3,500,773	+		ABIE53_003098	0.78	+3.0
3,500,773	+		ABIE53_003098	0.78	-0.9
3,500,774	-		ABIE53_003098	0.78	+1.6
3,500,803	+		ABIE53_003098	0.80	+4.9
3,500,803	+		ABIE53_003098	0.80	+3.7
3,500,804	-		ABIE53_003098	0.80	+2.3
3,500,812	+		ABIE53_003098	0.81	+0.9
3,500,812	+		ABIE53_003098	0.81	+1.5
3,500,812	+		ABIE53_003098	0.81	-2.2
3,500,813	-		ABIE53_003098	0.81	+0.9
3,500,813	-		ABIE53_003098	0.81	-0.3
3,500,825	-		ABIE53_003098	0.82	+0.7
3,500,825	-		ABIE53_003098	0.82	+2.7
3,500,929	+				+1.3
3,500,929	+				-3.2
3,500,929	+				-0.3
3,500,929	+				-1.5
3,500,929	+				-1.1
3,500,929	+				-1.1
3,500,929	+				+0.3
3,500,929	+				+2.9
3,500,929	+				+2.9
3,500,930	-				+1.0
3,500,930	-				+1.2
3,500,930	-				+1.0
3,500,930	-				-1.1
3,500,930	-				-1.1
3,500,938	+				-0.1
3,500,938	+				+1.4
3,500,938	+				-0.3
3,500,939	-				-1.9
3,500,939	-				+1.8
3,500,939	-				-1.1
3,500,939	-				+1.9
3,500,942	+				+1.2
3,500,942	+				+2.6
3,500,942	+				+4.7
3,500,942	+				-0.7
3,500,942	+				-2.3
3,500,942	+				+3.6
3,500,942	+				+1.5
3,500,942	+				+0.5
3,500,943	-				+1.6
3,500,943	-				+1.3
3,500,943	-				-1.1
3,500,943	-				+2.8
3,500,943	-				+0.0
3,500,943	-				+2.5
3,500,943	-				+0.3
3,500,943	-				+2.0
3,500,943	-				+1.3
3,500,966	+				+1.6
3,500,966	+				+5.0
3,500,966	+				+0.7
3,500,967	-				+2.3
3,500,967	-				-1.1
3,500,967	-				+1.3
3,500,967	-				+0.9
3,500,967	-				+0.3
3,501,003	+				-0.1
3,501,003	+				+1.0
3,501,004	-				+0.9
3,501,004	-				+2.7
3,501,004	-				+0.4
3,501,004	-				-3.5
3,501,019	+				+0.3
3,501,019	+				-1.3
3,501,020	-				-0.3
3,501,020	-				+0.3
3,501,020	-				+1.9
3,501,020	-				+0.9
3,501,040	+				+0.6
3,501,040	+				+2.6
3,501,040	+				+1.7
3,501,040	+				+1.0
3,501,040	+				-1.3
3,501,040	+				+2.3
3,501,041	-				+0.6
3,501,041	-				+2.4
3,501,041	-				+1.3
3,501,041	-				+1.3
3,501,041	-				-0.1
3,501,044	+				-0.3
3,501,044	+				+0.9
3,501,045	-				+2.3
3,501,045	-				-0.8
3,501,829	-				-0.0
3,501,829	-				+1.3
3,501,829	-				+4.1
3,501,829	-				-2.5
3,501,829	-				+2.0
3,501,829	-				-0.7
3,501,829	-				-1.0
3,501,829	-				-1.7
3,501,832	-				-1.5
3,501,832	-				-1.0
3,501,832	-				+2.4
3,501,832	-				+0.5
3,501,832	-				+1.0
3,501,832	-				+1.5
3,501,844	-				+1.0
3,501,860	+				-1.9
3,501,860	+				-0.3
3,501,861	-				-1.0
3,501,861	-				+0.3
3,501,861	-				+0.7
3,501,861	-				+0.4
3,501,861	-				+2.6
3,501,861	-				+0.3
3,501,937	-				+0.5
3,501,950	+				+1.3
3,501,951	-				-1.5
3,501,965	+				-2.3
3,501,966	-				-1.0
3,501,972	+				+0.3
3,501,972	+				-2.8
3,501,972	+				-1.7
3,501,973	-				+1.7
3,501,973	-				+1.9
3,501,973	-				+0.5
3,501,973	-				-3.2
3,501,973	-				+3.1
3,501,973	-				+1.6
3,501,999	+				-1.2
3,502,062	+				+0.3
3,502,062	+				+0.3
3,502,062	+				-1.3
3,502,062	+				+1.9
3,502,062	+				+0.0
3,502,063	-				+1.0
3,502,063	-				+1.1
3,502,063	-				+0.5
3,502,063	-				+3.0
3,502,063	-				-2.8
3,502,063	-				-0.7
3,502,063	-				+0.7
3,502,086	+				+2.5
3,502,146	+				-0.3
3,502,146	+				-3.7
3,502,147	-				+0.6
3,502,161	-				-1.5
3,502,216	+				+3.5
3,502,216	+				-1.7
3,502,217	-				+0.3
3,502,217	-				-1.7
3,502,255	+				-1.0
3,502,255	+				+0.4
3,502,255	+				+1.7
3,502,255	+				-0.3
3,502,256	-				-1.7
3,502,256	-				-0.3
3,502,256	-				-3.3
3,502,265	+		ABIE53_003100	0.10	-1.9
3,502,265	+		ABIE53_003100	0.10	+1.4
3,502,265	+		ABIE53_003100	0.10	-1.5
3,502,265	+		ABIE53_003100	0.10	+4.0
3,502,266	-		ABIE53_003100	0.10	+0.3
3,502,268	+		ABIE53_003100	0.10	+1.4
3,502,268	+		ABIE53_003100	0.10	+0.7
3,502,268	+		ABIE53_003100	0.10	+3.1
3,502,268	+		ABIE53_003100	0.10	+0.4
3,502,268	+		ABIE53_003100	0.10	-1.0
3,502,268	+		ABIE53_003100	0.10	-0.3
3,502,269	-		ABIE53_003100	0.10	-0.3
3,502,269	-		ABIE53_003100	0.10	+0.9
3,502,269	-		ABIE53_003100	0.10	-0.8
3,502,269	-		ABIE53_003100	0.10	-1.0
3,502,269	-		ABIE53_003100	0.10	-0.7
3,502,362	+		ABIE53_003100	0.18	+1.0
3,502,362	+		ABIE53_003100	0.18	-2.8
3,502,362	+		ABIE53_003100	0.18	+0.9
3,502,362	+		ABIE53_003100	0.18	-2.9
3,502,363	-		ABIE53_003100	0.18	-0.7
3,502,363	-		ABIE53_003100	0.18	+0.6
3,502,363	-		ABIE53_003100	0.18	+3.9
3,502,363	-		ABIE53_003100	0.18	+0.9
3,502,363	-		ABIE53_003100	0.18	+1.5
3,502,363	-		ABIE53_003100	0.18	-1.5
3,502,398	+		ABIE53_003100	0.21	-0.3
3,502,399	-		ABIE53_003100	0.21	+1.1
3,502,516	+		ABIE53_003100	0.31	+0.3
3,502,516	+		ABIE53_003100	0.31	+1.2
3,502,575	+		ABIE53_003100	0.36	+2.2
3,502,576	-		ABIE53_003100	0.36	+2.0
3,502,576	-		ABIE53_003100	0.36	-2.0
3,502,587	+		ABIE53_003100	0.37	+0.9
3,502,587	+		ABIE53_003100	0.37	-0.7
3,502,587	+		ABIE53_003100	0.37	-1.3
3,502,588	-		ABIE53_003100	0.37	+0.9
3,502,588	-		ABIE53_003100	0.37	+1.8
3,502,588	-		ABIE53_003100	0.37	-1.5
3,502,626	+		ABIE53_003100	0.40	+3.6
3,502,626	+		ABIE53_003100	0.40	+1.8
3,502,626	+		ABIE53_003100	0.40	+0.8
3,502,626	+		ABIE53_003100	0.40	+2.9
3,502,626	+		ABIE53_003100	0.40	-1.0
3,502,626	+		ABIE53_003100	0.40	-2.4
3,502,626	+		ABIE53_003100	0.40	+1.6
3,502,626	+		ABIE53_003100	0.40	+1.0
3,502,626	+		ABIE53_003100	0.40	-1.7
3,502,626	+		ABIE53_003100	0.40	-1.0
3,502,626	+		ABIE53_003100	0.40	+1.8
3,502,627	-		ABIE53_003100	0.40	-0.6
3,502,627	-		ABIE53_003100	0.40	+0.5
3,502,627	-		ABIE53_003100	0.40	-0.3
3,502,627	-		ABIE53_003100	0.40	+0.6
3,502,627	-		ABIE53_003100	0.40	-2.7
3,502,627	-		ABIE53_003100	0.40	-1.7
3,502,627	-		ABIE53_003100	0.40	+2.1
3,502,627	-		ABIE53_003100	0.40	+1.8
3,502,687	+		ABIE53_003100	0.45	+1.4
3,502,687	+		ABIE53_003100	0.45	+1.5
3,502,687	+		ABIE53_003100	0.45	-1.4
3,502,687	+		ABIE53_003100	0.45	+1.3
3,502,687	+		ABIE53_003100	0.45	-1.6
3,502,687	+		ABIE53_003100	0.45	+1.5
3,502,687	+		ABIE53_003100	0.45	-1.7
3,502,687	+		ABIE53_003100	0.45	-1.9
3,502,687	+		ABIE53_003100	0.45	-2.3
3,502,687	+		ABIE53_003100	0.45	+1.0
3,502,688	-		ABIE53_003100	0.45	+0.5
3,502,688	-		ABIE53_003100	0.45	-1.0
3,502,688	-		ABIE53_003100	0.45	+0.3
3,502,688	-		ABIE53_003100	0.45	-1.0
3,502,688	-		ABIE53_003100	0.45	-0.9
3,502,688	-		ABIE53_003100	0.45	+1.6
3,502,688	-		ABIE53_003100	0.45	+0.5
3,502,688	-		ABIE53_003100	0.45	+5.4
3,502,688	-		ABIE53_003100	0.45	-0.7
3,502,688	-		ABIE53_003100	0.45	+1.3
3,502,688	-		ABIE53_003100	0.45	+2.9
3,502,688	-		ABIE53_003100	0.45	+1.3
3,502,688	-		ABIE53_003100	0.45	-0.3
3,502,688	-		ABIE53_003100	0.45	+3.2
3,502,688	-		ABIE53_003100	0.45	+0.9
3,502,688	-		ABIE53_003100	0.45	-1.0
3,502,688	-		ABIE53_003100	0.45	-1.3
3,502,688	-		ABIE53_003100	0.45	+1.3
3,502,689	+		ABIE53_003100	0.45	+2.1
3,502,689	+		ABIE53_003100	0.45	+1.7
3,502,689	+		ABIE53_003100	0.45	-0.5
3,502,690	-		ABIE53_003100	0.45	-1.5
3,502,690	-		ABIE53_003100	0.45	-0.1
3,502,690	-		ABIE53_003100	0.45	+0.8
3,502,690	-		ABIE53_003100	0.45	-1.3
3,502,690	-		ABIE53_003100	0.45	-2.0
3,502,690	-		ABIE53_003100	0.45	-1.4