Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000892 and ABIE53_000893 are separated by 104 nucleotides ABIE53_000893 and ABIE53_000894 are separated by 11 nucleotides ABIE53_000894 and ABIE53_000895 are separated by 59 nucleotides ABIE53_000895 and ABIE53_000896 are separated by 97 nucleotides
ABIE53_000892: ABIE53_000892 - type IV pilus assembly protein PilW, at 968,480 to 969,298
_000892
ABIE53_000893: ABIE53_000893 - Tfp pilus assembly protein PilX, at 969,403 to 969,894
_000893
ABIE53_000894: ABIE53_000894 - type IV pilus assembly protein PilE, at 969,906 to 970,337
_000894
ABIE53_000895: ABIE53_000895 - hypothetical protein, at 970,397 to 970,861
_000895
ABIE53_000896: ABIE53_000896 - putative membrane protein YqjE, at 970,959 to 971,345
_000896
Position (kb) 969
970
971 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 968.912 kb on - strand, within ABIE53_000892 at 968.996 kb on + strand, within ABIE53_000892 at 968.996 kb on + strand, within ABIE53_000892 at 968.997 kb on - strand, within ABIE53_000892 at 968.997 kb on - strand, within ABIE53_000892 at 968.997 kb on - strand, within ABIE53_000892 at 969.068 kb on + strand, within ABIE53_000892 at 969.068 kb on + strand, within ABIE53_000892 at 969.069 kb on - strand, within ABIE53_000892 at 969.069 kb on - strand, within ABIE53_000892 at 969.159 kb on + strand, within ABIE53_000892 at 969.160 kb on - strand, within ABIE53_000892 at 969.160 kb on - strand, within ABIE53_000892 at 969.160 kb on - strand, within ABIE53_000892 at 969.160 kb on - strand, within ABIE53_000892 at 969.160 kb on - strand, within ABIE53_000892 at 969.194 kb on + strand, within ABIE53_000892 at 969.194 kb on + strand, within ABIE53_000892 at 969.194 kb on + strand, within ABIE53_000892 at 969.194 kb on + strand, within ABIE53_000892 at 969.194 kb on + strand, within ABIE53_000892 at 969.194 kb on + strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.195 kb on - strand, within ABIE53_000892 at 969.213 kb on + strand, within ABIE53_000892 at 969.213 kb on + strand, within ABIE53_000892 at 969.214 kb on - strand, within ABIE53_000892 at 969.278 kb on + strand at 969.278 kb on + strand at 969.278 kb on + strand at 969.278 kb on + strand at 969.279 kb on - strand at 969.305 kb on + strand at 969.306 kb on - strand at 969.357 kb on - strand at 969.357 kb on - strand at 969.421 kb on + strand at 969.422 kb on + strand at 969.422 kb on + strand at 969.422 kb on + strand at 969.422 kb on + strand at 969.423 kb on - strand at 969.423 kb on - strand at 969.423 kb on - strand at 969.423 kb on - strand at 969.423 kb on - strand at 969.423 kb on - strand at 969.426 kb on - strand at 969.426 kb on - strand at 969.526 kb on + strand, within ABIE53_000893 at 969.527 kb on - strand, within ABIE53_000893 at 969.527 kb on - strand, within ABIE53_000893 at 969.567 kb on - strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.769 kb on + strand, within ABIE53_000893 at 969.770 kb on - strand, within ABIE53_000893 at 969.770 kb on - strand, within ABIE53_000893 at 969.770 kb on - strand, within ABIE53_000893 at 969.815 kb on + strand, within ABIE53_000893 at 969.816 kb on - strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.833 kb on + strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.834 kb on - strand, within ABIE53_000893 at 969.892 kb on + strand at 969.892 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.922 kb on + strand at 969.923 kb on - strand at 969.923 kb on - strand at 969.923 kb on - strand at 970.010 kb on + strand, within ABIE53_000894 at 970.010 kb on + strand, within ABIE53_000894 at 970.010 kb on + strand, within ABIE53_000894 at 970.010 kb on + strand, within ABIE53_000894 at 970.011 kb on - strand, within ABIE53_000894 at 970.011 kb on - strand, within ABIE53_000894 at 970.011 kb on - strand, within ABIE53_000894 at 970.011 kb on - strand, within ABIE53_000894 at 970.011 kb on - strand, within ABIE53_000894 at 970.023 kb on + strand, within ABIE53_000894 at 970.024 kb on - strand, within ABIE53_000894 at 970.024 kb on - strand, within ABIE53_000894 at 970.146 kb on + strand, within ABIE53_000894 at 970.146 kb on + strand, within ABIE53_000894 at 970.250 kb on + strand, within ABIE53_000894 at 970.250 kb on + strand, within ABIE53_000894 at 970.280 kb on + strand, within ABIE53_000894 at 970.280 kb on + strand, within ABIE53_000894 at 970.280 kb on + strand, within ABIE53_000894 at 970.280 kb on + strand, within ABIE53_000894 at 970.280 kb on + strand, within ABIE53_000894 at 970.281 kb on - strand, within ABIE53_000894 at 970.281 kb on - strand, within ABIE53_000894 at 970.335 kb on + strand at 970.335 kb on + strand at 970.336 kb on - strand at 970.374 kb on - strand at 970.385 kb on + strand at 970.386 kb on - strand at 970.386 kb on - strand at 970.386 kb on - strand at 970.386 kb on - strand at 970.454 kb on + strand, within ABIE53_000895 at 970.455 kb on - strand, within ABIE53_000895 at 970.455 kb on - strand, within ABIE53_000895 at 970.462 kb on - strand, within ABIE53_000895 at 970.581 kb on + strand, within ABIE53_000895 at 970.709 kb on + strand, within ABIE53_000895 at 970.709 kb on + strand, within ABIE53_000895 at 970.710 kb on - strand, within ABIE53_000895 at 970.710 kb on - strand, within ABIE53_000895 at 970.828 kb on + strand at 970.828 kb on + strand at 970.828 kb on + strand at 970.828 kb on + strand at 970.848 kb on + strand at 970.848 kb on + strand at 970.848 kb on + strand at 970.848 kb on + strand at 970.848 kb on + strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.849 kb on - strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.852 kb on + strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 970.853 kb on - strand at 971.116 kb on + strand, within ABIE53_000896 at 971.116 kb on + strand, within ABIE53_000896 at 971.116 kb on + strand, within ABIE53_000896 at 971.116 kb on + strand, within ABIE53_000896 at 971.116 kb on + strand, within ABIE53_000896 at 971.117 kb on - strand, within ABIE53_000896 at 971.117 kb on - strand, within ABIE53_000896 at 971.117 kb on - strand, within ABIE53_000896 at 971.117 kb on - strand, within ABIE53_000896 at 971.117 kb on - strand, within ABIE53_000896 at 971.117 kb on - strand, within ABIE53_000896 at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.309 kb on + strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand at 971.310 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 968,912 - ABIE53_000892 0.53 +1.4 968,996 + ABIE53_000892 0.63 +0.9 968,996 + ABIE53_000892 0.63 -0.7 968,997 - ABIE53_000892 0.63 -1.2 968,997 - ABIE53_000892 0.63 +2.5 968,997 - ABIE53_000892 0.63 -1.1 969,068 + ABIE53_000892 0.72 +1.2 969,068 + ABIE53_000892 0.72 +0.8 969,069 - ABIE53_000892 0.72 -1.0 969,069 - ABIE53_000892 0.72 +2.5 969,159 + ABIE53_000892 0.83 +3.6 969,160 - ABIE53_000892 0.83 -1.7 969,160 - ABIE53_000892 0.83 +0.3 969,160 - ABIE53_000892 0.83 +0.2 969,160 - ABIE53_000892 0.83 +1.3 969,160 - ABIE53_000892 0.83 -0.2 969,194 + ABIE53_000892 0.87 -3.9 969,194 + ABIE53_000892 0.87 +1.8 969,194 + ABIE53_000892 0.87 -2.4 969,194 + ABIE53_000892 0.87 -1.5 969,194 + ABIE53_000892 0.87 +1.0 969,194 + ABIE53_000892 0.87 -1.7 969,195 - ABIE53_000892 0.87 +0.3 969,195 - ABIE53_000892 0.87 +1.4 969,195 - ABIE53_000892 0.87 -2.5 969,195 - ABIE53_000892 0.87 -2.3 969,195 - ABIE53_000892 0.87 +2.8 969,195 - ABIE53_000892 0.87 +1.6 969,195 - ABIE53_000892 0.87 +0.0 969,195 - ABIE53_000892 0.87 -0.7 969,213 + ABIE53_000892 0.89 +1.9 969,213 + ABIE53_000892 0.89 +0.3 969,214 - ABIE53_000892 0.90 -1.0 969,278 + +2.9 969,278 + +0.7 969,278 + -1.0 969,278 + -2.7 969,279 - -0.3 969,305 + +2.7 969,306 - -0.3 969,357 - +1.0 969,357 - -0.3 969,421 + -1.8 969,422 + -2.4 969,422 + -0.3 969,422 + -1.7 969,422 + -2.7 969,423 - +1.8 969,423 - +0.2 969,423 - -0.1 969,423 - -1.3 969,423 - +1.3 969,423 - -1.0 969,426 - -1.0 969,426 - -2.3 969,526 + ABIE53_000893 0.25 -2.0 969,527 - ABIE53_000893 0.25 +0.5 969,527 - ABIE53_000893 0.25 -2.7 969,567 - ABIE53_000893 0.33 -0.3 969,769 + ABIE53_000893 0.74 +4.0 969,769 + ABIE53_000893 0.74 -0.4 969,769 + ABIE53_000893 0.74 -1.3 969,769 + ABIE53_000893 0.74 +3.1 969,769 + ABIE53_000893 0.74 -1.3 969,769 + ABIE53_000893 0.74 -2.4 969,769 + ABIE53_000893 0.74 +0.5 969,769 + ABIE53_000893 0.74 +1.3 969,769 + ABIE53_000893 0.74 +0.3 969,769 + ABIE53_000893 0.74 +0.6 969,769 + ABIE53_000893 0.74 -2.0 969,770 - ABIE53_000893 0.75 -1.3 969,770 - ABIE53_000893 0.75 +0.7 969,770 - ABIE53_000893 0.75 -0.7 969,815 + ABIE53_000893 0.84 +4.3 969,816 - ABIE53_000893 0.84 +0.8 969,833 + ABIE53_000893 0.87 +0.9 969,833 + ABIE53_000893 0.87 +1.4 969,833 + ABIE53_000893 0.87 -1.3 969,833 + ABIE53_000893 0.87 +1.0 969,833 + ABIE53_000893 0.87 +0.2 969,833 + ABIE53_000893 0.87 +0.3 969,833 + ABIE53_000893 0.87 -0.3 969,833 + ABIE53_000893 0.87 +1.2 969,833 + ABIE53_000893 0.87 -0.7 969,834 - ABIE53_000893 0.88 +4.8 969,834 - ABIE53_000893 0.88 -2.3 969,834 - ABIE53_000893 0.88 -1.5 969,834 - ABIE53_000893 0.88 -3.9 969,834 - ABIE53_000893 0.88 -1.3 969,834 - ABIE53_000893 0.88 -1.0 969,834 - ABIE53_000893 0.88 +0.6 969,834 - ABIE53_000893 0.88 +0.2 969,834 - ABIE53_000893 0.88 -2.1 969,834 - ABIE53_000893 0.88 +0.9 969,892 + +0.3 969,892 + -0.7 969,922 + +0.1 969,922 + +1.3 969,922 + +0.2 969,922 + -2.0 969,922 + +0.2 969,922 + -1.3 969,922 + +0.7 969,922 + -2.3 969,922 + -1.8 969,923 - +1.7 969,923 - -0.8 969,923 - +1.0 970,010 + ABIE53_000894 0.24 -0.3 970,010 + ABIE53_000894 0.24 +0.3 970,010 + ABIE53_000894 0.24 +1.9 970,010 + ABIE53_000894 0.24 +1.3 970,011 - ABIE53_000894 0.24 +1.3 970,011 - ABIE53_000894 0.24 -0.2 970,011 - ABIE53_000894 0.24 -0.6 970,011 - ABIE53_000894 0.24 -0.3 970,011 - ABIE53_000894 0.24 +1.6 970,023 + ABIE53_000894 0.27 +0.5 970,024 - ABIE53_000894 0.27 +5.1 970,024 - ABIE53_000894 0.27 -0.7 970,146 + ABIE53_000894 0.56 +2.9 970,146 + ABIE53_000894 0.56 +0.6 970,250 + ABIE53_000894 0.80 -1.7 970,250 + ABIE53_000894 0.80 -1.5 970,280 + ABIE53_000894 0.87 +2.3 970,280 + ABIE53_000894 0.87 -2.3 970,280 + ABIE53_000894 0.87 -0.3 970,280 + ABIE53_000894 0.87 +0.3 970,280 + ABIE53_000894 0.87 -0.3 970,281 - ABIE53_000894 0.87 -3.9 970,281 - ABIE53_000894 0.87 +0.6 970,335 + -1.7 970,335 + -1.5 970,336 - -0.1 970,374 - +1.4 970,385 + -1.0 970,386 - +1.2 970,386 - +0.8 970,386 - -1.2 970,386 - +1.5 970,454 + ABIE53_000895 0.12 +2.2 970,455 - ABIE53_000895 0.12 -1.0 970,455 - ABIE53_000895 0.12 -0.2 970,462 - ABIE53_000895 0.14 +0.8 970,581 + ABIE53_000895 0.40 +1.9 970,709 + ABIE53_000895 0.67 -3.0 970,709 + ABIE53_000895 0.67 +2.0 970,710 - ABIE53_000895 0.67 +0.7 970,710 - ABIE53_000895 0.67 +0.6 970,828 + +1.6 970,828 + +1.3 970,828 + -2.4 970,828 + +4.3 970,848 + -1.8 970,848 + -2.5 970,848 + -1.2 970,848 + -1.0 970,848 + +0.3 970,849 - +0.3 970,849 - +2.4 970,849 - -1.1 970,849 - +1.3 970,849 - -0.5 970,849 - -0.6 970,849 - +1.2 970,849 - +1.0 970,849 - -0.9 970,849 - +0.9 970,849 - -2.2 970,852 + +5.2 970,852 + -0.4 970,852 + -0.7 970,852 + -0.7 970,852 + +1.3 970,852 + +1.0 970,852 + +2.3 970,852 + -0.7 970,852 + +3.3 970,852 + -0.0 970,852 + -1.2 970,853 - +1.8 970,853 - +1.6 970,853 - -1.2 970,853 - -0.2 970,853 - -1.2 970,853 - +1.5 970,853 - +0.3 970,853 - +2.3 970,853 - -0.7 970,853 - -1.0 970,853 - -0.7 970,853 - -1.2 970,853 - +2.8 971,116 + ABIE53_000896 0.41 +1.0 971,116 + ABIE53_000896 0.41 +1.8 971,116 + ABIE53_000896 0.41 -1.3 971,116 + ABIE53_000896 0.41 +1.3 971,116 + ABIE53_000896 0.41 +2.5 971,117 - ABIE53_000896 0.41 +0.3 971,117 - ABIE53_000896 0.41 +1.6 971,117 - ABIE53_000896 0.41 -2.2 971,117 - ABIE53_000896 0.41 +2.6 971,117 - ABIE53_000896 0.41 +0.7 971,117 - ABIE53_000896 0.41 +0.1 971,309 + +2.1 971,309 + +1.3 971,309 + -1.2 971,309 + +1.3 971,309 + +0.3 971,309 + +2.0 971,309 + -0.2 971,309 + -0.2 971,309 + -1.0 971,309 + +1.8 971,310 - +1.5 971,310 - +1.3 971,310 - +2.3 971,310 - -0.2 971,310 - -0.5 971,310 - -0.2 971,310 - +1.4 971,310 - +1.0 971,310 - -1.7 971,310 - +1.1 971,310 - +0.7 971,310 - +0.2 971,310 - +1.3 971,310 - -2.6 971,310 - -1.7 971,310 - +0.7 971,310 - -0.7 971,310 - +1.3
Or see this region's nucleotide sequence