Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003964 and ABIE53_003965 are separated by 397 nucleotides ABIE53_003965 and ABIE53_003966 are separated by 4 nucleotides
ABIE53_003964: ABIE53_003964 - uncharacterized protein (TIGR00369 family), at 116,818 to 117,255
_003964
ABIE53_003965: ABIE53_003965 - LysR family glycine cleavage system transcriptional activator, at 117,653 to 118,618
_003965
ABIE53_003966: ABIE53_003966 - long-chain acyl-CoA synthetase, at 118,623 to 120,251
_003966
Position (kb) 117
118
119 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 116.803 kb on + strand at 116.804 kb on - strand at 116.808 kb on - strand at 116.814 kb on - strand at 116.814 kb on - strand at 116.814 kb on - strand at 116.876 kb on + strand, within ABIE53_003964 at 116.877 kb on - strand, within ABIE53_003964 at 116.877 kb on - strand, within ABIE53_003964 at 116.877 kb on - strand, within ABIE53_003964 at 117.047 kb on - strand, within ABIE53_003964 at 117.070 kb on - strand, within ABIE53_003964 at 117.071 kb on + strand, within ABIE53_003964 at 117.257 kb on - strand at 117.349 kb on + strand at 117.361 kb on - strand at 117.610 kb on + strand at 117.611 kb on - strand at 117.662 kb on + strand at 117.662 kb on + strand at 117.662 kb on + strand at 117.663 kb on - strand at 117.663 kb on - strand at 117.663 kb on - strand at 117.962 kb on + strand, within ABIE53_003965 at 117.963 kb on - strand, within ABIE53_003965 at 118.073 kb on + strand, within ABIE53_003965 at 118.074 kb on - strand, within ABIE53_003965 at 118.244 kb on + strand, within ABIE53_003965 at 118.244 kb on + strand, within ABIE53_003965 at 118.930 kb on + strand, within ABIE53_003966 at 119.155 kb on + strand, within ABIE53_003966 at 119.155 kb on + strand, within ABIE53_003966 at 119.241 kb on + strand, within ABIE53_003966 at 119.242 kb on - strand, within ABIE53_003966 at 119.325 kb on + strand, within ABIE53_003966 at 119.338 kb on + strand, within ABIE53_003966 at 119.339 kb on - strand, within ABIE53_003966 at 119.378 kb on - strand, within ABIE53_003966 at 119.378 kb on - strand, within ABIE53_003966 at 119.378 kb on - strand, within ABIE53_003966 at 119.438 kb on + strand, within ABIE53_003966 at 119.610 kb on + strand, within ABIE53_003966 at 119.611 kb on - strand, within ABIE53_003966 at 119.611 kb on - strand, within ABIE53_003966
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 116,803 + -0.7 116,804 - -0.9 116,808 - +0.7 116,814 - +1.2 116,814 - +0.7 116,814 - -0.0 116,876 + ABIE53_003964 0.13 +0.2 116,877 - ABIE53_003964 0.13 +0.0 116,877 - ABIE53_003964 0.13 -0.3 116,877 - ABIE53_003964 0.13 -0.1 117,047 - ABIE53_003964 0.52 +1.0 117,070 - ABIE53_003964 0.58 -2.4 117,071 + ABIE53_003964 0.58 -0.6 117,257 - -0.7 117,349 + -1.1 117,361 - +0.9 117,610 + +1.6 117,611 - +0.9 117,662 + -1.1 117,662 + +0.3 117,662 + -0.1 117,663 - -0.7 117,663 - +0.5 117,663 - -0.7 117,962 + ABIE53_003965 0.32 -0.8 117,963 - ABIE53_003965 0.32 +0.3 118,073 + ABIE53_003965 0.43 +0.2 118,074 - ABIE53_003965 0.44 -1.4 118,244 + ABIE53_003965 0.61 -0.4 118,244 + ABIE53_003965 0.61 +0.7 118,930 + ABIE53_003966 0.19 -1.7 119,155 + ABIE53_003966 0.33 +0.9 119,155 + ABIE53_003966 0.33 +1.5 119,241 + ABIE53_003966 0.38 -0.7 119,242 - ABIE53_003966 0.38 -1.9 119,325 + ABIE53_003966 0.43 +1.1 119,338 + ABIE53_003966 0.44 +2.6 119,339 - ABIE53_003966 0.44 +1.9 119,378 - ABIE53_003966 0.46 -1.9 119,378 - ABIE53_003966 0.46 +0.4 119,378 - ABIE53_003966 0.46 +2.9 119,438 + ABIE53_003966 0.50 +0.9 119,610 + ABIE53_003966 0.61 +1.4 119,611 - ABIE53_003966 0.61 -0.4 119,611 - ABIE53_003966 0.61 -0.7
Or see this region's nucleotide sequence