Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000737

Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000736 and ABIE53_000737 are separated by 152 nucleotidesABIE53_000737 and ABIE53_000738 overlap by 4 nucleotides ABIE53_000736: ABIE53_000736 - methyl-accepting chemotaxis protein-1 (serine sensor receptor), at 793,708 to 795,366 _000736 ABIE53_000737: ABIE53_000737 - cytochrome c553, at 795,519 to 796,328 _000737 ABIE53_000738: ABIE53_000738 - cytochrome c oxidase subunit 1, at 796,325 to 797,950 _000738 Position (kb) 795 796 797Strain fitness (log2 ratio) -2 -1 0 1 2 3at 794.643 kb on + strand, within ABIE53_000736at 794.643 kb on + strand, within ABIE53_000736at 794.643 kb on + strand, within ABIE53_000736at 794.643 kb on + strand, within ABIE53_000736at 794.643 kb on + strand, within ABIE53_000736at 794.644 kb on - strand, within ABIE53_000736at 794.644 kb on - strand, within ABIE53_000736at 794.644 kb on - strand, within ABIE53_000736at 794.644 kb on - strand, within ABIE53_000736at 795.520 kb on + strandat 795.521 kb on - strandat 795.521 kb on - strandat 795.527 kb on + strandat 795.528 kb on - strandat 795.528 kb on - strandat 795.535 kb on + strandat 795.536 kb on - strandat 795.536 kb on - strandat 795.539 kb on - strandat 795.551 kb on + strandat 795.551 kb on + strandat 795.551 kb on + strandat 795.551 kb on + strandat 795.552 kb on - strandat 795.552 kb on - strandat 795.555 kb on + strandat 795.555 kb on + strandat 795.555 kb on + strandat 795.555 kb on + strandat 795.556 kb on - strandat 795.838 kb on + strand, within ABIE53_000737at 795.838 kb on + strand, within ABIE53_000737at 795.838 kb on + strand, within ABIE53_000737at 795.838 kb on + strand, within ABIE53_000737at 795.838 kb on + strand, within ABIE53_000737at 795.839 kb on - strand, within ABIE53_000737at 795.839 kb on - strand, within ABIE53_000737at 795.839 kb on - strand, within ABIE53_000737at 795.839 kb on - strand, within ABIE53_000737at 795.841 kb on + strand, within ABIE53_000737at 795.841 kb on + strand, within ABIE53_000737at 795.842 kb on - strand, within ABIE53_000737at 795.926 kb on - strand, within ABIE53_000737at 795.943 kb on + strand, within ABIE53_000737at 795.943 kb on + strand, within ABIE53_000737at 795.943 kb on + strand, within ABIE53_000737at 795.944 kb on - strand, within ABIE53_000737at 795.944 kb on - strand, within ABIE53_000737at 795.958 kb on + strand, within ABIE53_000737at 796.142 kb on - strand, within ABIE53_000737at 796.209 kb on - strand, within ABIE53_000737at 796.242 kb on + strand, within ABIE53_000737at 796.243 kb on - strand, within ABIE53_000737at 796.401 kb on + strandat 796.450 kb on + strandat 796.451 kb on - strandat 796.451 kb on - strandat 796.551 kb on + strand, within ABIE53_000738at 796.551 kb on + strand, within ABIE53_000738at 796.551 kb on + strand, within ABIE53_000738at 796.551 kb on + strand, within ABIE53_000738at 796.552 kb on - strand, within ABIE53_000738at 796.552 kb on - strand, within ABIE53_000738at 796.552 kb on - strand, within ABIE53_000738at 796.552 kb on - strand, within ABIE53_000738at 796.552 kb on - strand, within ABIE53_000738at 796.644 kb on + strand, within ABIE53_000738at 796.644 kb on + strand, within ABIE53_000738at 796.644 kb on + strand, within ABIE53_000738at 796.645 kb on - strand, within ABIE53_000738at 796.645 kb on - strand, within ABIE53_000738at 796.645 kb on - strand, within ABIE53_000738at 796.650 kb on + strand, within ABIE53_000738at 796.650 kb on + strand, within ABIE53_000738at 796.651 kb on - strand, within ABIE53_000738at 796.654 kb on - strand, within ABIE53_000738at 796.654 kb on - strand, within ABIE53_000738at 796.690 kb on - strand, within ABIE53_000738at 796.690 kb on - strand, within ABIE53_000738at 796.690 kb on - strand, within ABIE53_000738at 796.749 kb on - strand, within ABIE53_000738at 796.749 kb on - strand, within ABIE53_000738at 796.749 kb on - strand, within ABIE53_000738at 796.800 kb on + strand, within ABIE53_000738at 796.800 kb on + strand, within ABIE53_000738at 796.815 kb on + strand, within ABIE53_000738at 796.815 kb on + strand, within ABIE53_000738at 796.816 kb on - strand, within ABIE53_000738at 796.816 kb on - strand, within ABIE53_000738at 796.816 kb on - strand, within ABIE53_000738at 796.816 kb on - strand, within ABIE53_000738at 796.899 kb on + strand, within ABIE53_000738at 796.899 kb on + strand, within ABIE53_000738at 796.899 kb on + strand, within ABIE53_000738at 796.900 kb on - strand, within ABIE53_000738at 796.900 kb on - strand, within ABIE53_000738at 796.900 kb on - strand, within ABIE53_000738at 796.913 kb on - strand, within ABIE53_000738at 796.913 kb on - strand, within ABIE53_000738at 796.913 kb on - strand, within ABIE53_000738at 796.913 kb on - strand, within ABIE53_000738at 797.224 kb on + strand, within ABIE53_000738at 797.226 kb on + strand, within ABIE53_000738at 797.226 kb on + strand, within ABIE53_000738at 797.226 kb on + strand, within ABIE53_000738at 797.226 kb on + strand, within ABIE53_000738at 797.226 kb on + strand, within ABIE53_000738at 797.226 kb on + strand, within ABIE53_000738at 797.227 kb on - strand, within ABIE53_000738at 797.227 kb on - strand, within ABIE53_000738at 797.262 kb on + strand, within ABIE53_000738at 797.262 kb on + strand, within ABIE53_000738at 797.262 kb on + strand, within ABIE53_000738at 797.262 kb on + strand, within ABIE53_000738at 797.263 kb on - strand, within ABIE53_000738at 797.263 kb on - strand, within ABIE53_000738at 797.274 kb on + strand, within ABIE53_000738at 797.274 kb on + strand, within ABIE53_000738at 797.274 kb on + strand, within ABIE53_000738at 797.275 kb on - strand, within ABIE53_000738at 797.275 kb on - strand, within ABIE53_000738at 797.295 kb on + strand, within ABIE53_000738at 797.296 kb on - strand, within ABIE53_000738at 797.296 kb on - strand, within ABIE53_000738

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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794,643 + ABIE53_000736 0.56 -0.7
794,643 + ABIE53_000736 0.56 +0.2
794,643 + ABIE53_000736 0.56 -1.2
794,643 + ABIE53_000736 0.56 -0.8
794,643 + ABIE53_000736 0.56 +0.7
794,644 - ABIE53_000736 0.56 -0.1
794,644 - ABIE53_000736 0.56 +0.1
794,644 - ABIE53_000736 0.56 +0.5
794,644 - ABIE53_000736 0.56 +1.0
795,520 + -1.8
795,521 - -0.7
795,521 - -2.1
795,527 + +0.5
795,528 - -0.4
795,528 - -0.0
795,535 + +0.1
795,536 - -0.9
795,536 - +0.8
795,539 - +3.1
795,551 + -2.5
795,551 + +0.7
795,551 + -0.3
795,551 + -0.0
795,552 - -0.8
795,552 - -1.9
795,555 + -2.0
795,555 + +0.4
795,555 + +1.5
795,555 + +0.5
795,556 - -0.0
795,838 + ABIE53_000737 0.39 +0.3
795,838 + ABIE53_000737 0.39 +2.4
795,838 + ABIE53_000737 0.39 -1.9
795,838 + ABIE53_000737 0.39 +0.8
795,838 + ABIE53_000737 0.39 -0.8
795,839 - ABIE53_000737 0.40 +0.9
795,839 - ABIE53_000737 0.40 +0.7
795,839 - ABIE53_000737 0.40 -0.7
795,839 - ABIE53_000737 0.40 -1.1
795,841 + ABIE53_000737 0.40 +2.1
795,841 + ABIE53_000737 0.40 +0.0
795,842 - ABIE53_000737 0.40 -1.0
795,926 - ABIE53_000737 0.50 -0.5
795,943 + ABIE53_000737 0.52 -1.5
795,943 + ABIE53_000737 0.52 +0.9
795,943 + ABIE53_000737 0.52 +1.9
795,944 - ABIE53_000737 0.52 +0.1
795,944 - ABIE53_000737 0.52 +0.5
795,958 + ABIE53_000737 0.54 -0.9
796,142 - ABIE53_000737 0.77 +0.0
796,209 - ABIE53_000737 0.85 +1.5
796,242 + ABIE53_000737 0.89 +1.7
796,243 - ABIE53_000737 0.89 -1.6
796,401 + +0.8
796,450 + +0.3
796,451 - -0.8
796,451 - -1.0
796,551 + ABIE53_000738 0.14 -1.0
796,551 + ABIE53_000738 0.14 +1.4
796,551 + ABIE53_000738 0.14 -0.5
796,551 + ABIE53_000738 0.14 +0.9
796,552 - ABIE53_000738 0.14 +0.1
796,552 - ABIE53_000738 0.14 +0.1
796,552 - ABIE53_000738 0.14 +1.4
796,552 - ABIE53_000738 0.14 +0.3
796,552 - ABIE53_000738 0.14 +0.1
796,644 + ABIE53_000738 0.20 -0.5
796,644 + ABIE53_000738 0.20 +2.0
796,644 + ABIE53_000738 0.20 -1.4
796,645 - ABIE53_000738 0.20 -0.6
796,645 - ABIE53_000738 0.20 +1.5
796,645 - ABIE53_000738 0.20 +1.5
796,650 + ABIE53_000738 0.20 +1.1
796,650 + ABIE53_000738 0.20 +0.8
796,651 - ABIE53_000738 0.20 +0.9
796,654 - ABIE53_000738 0.20 +1.2
796,654 - ABIE53_000738 0.20 +1.1
796,690 - ABIE53_000738 0.22 +0.7
796,690 - ABIE53_000738 0.22 -1.1
796,690 - ABIE53_000738 0.22 -1.2
796,749 - ABIE53_000738 0.26 +1.7
796,749 - ABIE53_000738 0.26 +0.4
796,749 - ABIE53_000738 0.26 -0.8
796,800 + ABIE53_000738 0.29 +1.1
796,800 + ABIE53_000738 0.29 -0.9
796,815 + ABIE53_000738 0.30 -1.5
796,815 + ABIE53_000738 0.30 +0.4
796,816 - ABIE53_000738 0.30 -0.1
796,816 - ABIE53_000738 0.30 -0.9
796,816 - ABIE53_000738 0.30 -1.5
796,816 - ABIE53_000738 0.30 -0.5
796,899 + ABIE53_000738 0.35 -0.7
796,899 + ABIE53_000738 0.35 -1.2
796,899 + ABIE53_000738 0.35 -0.5
796,900 - ABIE53_000738 0.35 -0.6
796,900 - ABIE53_000738 0.35 +1.1
796,900 - ABIE53_000738 0.35 -0.5
796,913 - ABIE53_000738 0.36 +1.3
796,913 - ABIE53_000738 0.36 +0.2
796,913 - ABIE53_000738 0.36 +3.7
796,913 - ABIE53_000738 0.36 -0.5
797,224 + ABIE53_000738 0.55 +1.8
797,226 + ABIE53_000738 0.55 -1.2
797,226 + ABIE53_000738 0.55 -2.4
797,226 + ABIE53_000738 0.55 +1.1
797,226 + ABIE53_000738 0.55 +0.3
797,226 + ABIE53_000738 0.55 +2.2
797,226 + ABIE53_000738 0.55 +1.2
797,227 - ABIE53_000738 0.55 -0.5
797,227 - ABIE53_000738 0.55 +1.1
797,262 + ABIE53_000738 0.58 +0.2
797,262 + ABIE53_000738 0.58 -1.1
797,262 + ABIE53_000738 0.58 -0.3
797,262 + ABIE53_000738 0.58 +0.4
797,263 - ABIE53_000738 0.58 +1.0
797,263 - ABIE53_000738 0.58 +1.8
797,274 + ABIE53_000738 0.58 +0.1
797,274 + ABIE53_000738 0.58 -1.3
797,274 + ABIE53_000738 0.58 +1.6
797,275 - ABIE53_000738 0.58 +0.7
797,275 - ABIE53_000738 0.58 +1.1
797,295 + ABIE53_000738 0.60 -0.9
797,296 - ABIE53_000738 0.60 -1.1
797,296 - ABIE53_000738 0.60 -0.5

Or see this region's nucleotide sequence