Experiment: Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004127 and ABIE53_004128 are separated by 310 nucleotides ABIE53_004128 and ABIE53_004129 are separated by 56 nucleotides ABIE53_004129 and ABIE53_004130 are separated by 16 nucleotides
ABIE53_004127: ABIE53_004127 - CheY-like chemotaxis protein, at 298,583 to 299,554
_004127
ABIE53_004128: ABIE53_004128 - HAD superfamily hydrolase (TIGR01509 family), at 299,865 to 300,539
_004128
ABIE53_004129: ABIE53_004129 - hypothetical protein, at 300,596 to 301,243
_004129
ABIE53_004130: ABIE53_004130 - flagellar motor protein MotB, at 301,260 to 301,916
_004130
Position (kb) 299
300
301 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 298.929 kb on + strand, within ABIE53_004127 at 298.929 kb on + strand, within ABIE53_004127 at 298.929 kb on + strand, within ABIE53_004127 at 298.929 kb on + strand, within ABIE53_004127 at 298.929 kb on + strand, within ABIE53_004127 at 298.930 kb on - strand, within ABIE53_004127 at 298.930 kb on - strand, within ABIE53_004127 at 298.930 kb on - strand, within ABIE53_004127 at 298.932 kb on + strand, within ABIE53_004127 at 298.932 kb on + strand, within ABIE53_004127 at 298.933 kb on - strand, within ABIE53_004127 at 298.933 kb on - strand, within ABIE53_004127 at 298.995 kb on + strand, within ABIE53_004127 at 298.995 kb on + strand, within ABIE53_004127 at 298.996 kb on - strand, within ABIE53_004127 at 298.996 kb on - strand, within ABIE53_004127 at 298.996 kb on - strand, within ABIE53_004127 at 298.996 kb on - strand, within ABIE53_004127 at 298.996 kb on - strand, within ABIE53_004127 at 299.112 kb on + strand, within ABIE53_004127 at 299.112 kb on + strand, within ABIE53_004127 at 299.112 kb on + strand, within ABIE53_004127 at 299.112 kb on + strand, within ABIE53_004127 at 299.113 kb on - strand, within ABIE53_004127 at 299.113 kb on - strand, within ABIE53_004127 at 299.114 kb on + strand, within ABIE53_004127 at 299.114 kb on + strand, within ABIE53_004127 at 299.114 kb on + strand, within ABIE53_004127 at 299.115 kb on - strand, within ABIE53_004127 at 299.115 kb on - strand, within ABIE53_004127 at 299.115 kb on - strand, within ABIE53_004127 at 299.115 kb on - strand, within ABIE53_004127 at 299.231 kb on + strand, within ABIE53_004127 at 299.231 kb on + strand, within ABIE53_004127 at 299.247 kb on + strand, within ABIE53_004127 at 299.248 kb on - strand, within ABIE53_004127 at 299.248 kb on - strand, within ABIE53_004127 at 299.248 kb on - strand, within ABIE53_004127 at 299.248 kb on - strand, within ABIE53_004127 at 299.484 kb on + strand at 299.484 kb on + strand at 299.484 kb on + strand at 299.484 kb on + strand at 299.484 kb on + strand at 299.485 kb on - strand at 299.485 kb on - strand at 299.485 kb on - strand at 299.485 kb on - strand at 299.485 kb on - strand at 299.485 kb on - strand at 299.542 kb on + strand at 299.543 kb on - strand at 299.554 kb on + strand at 299.554 kb on + strand at 299.555 kb on - strand at 299.659 kb on + strand at 299.675 kb on + strand at 299.675 kb on + strand at 299.675 kb on + strand at 299.676 kb on - strand at 299.676 kb on - strand at 299.709 kb on + strand at 299.709 kb on + strand at 299.709 kb on + strand at 299.709 kb on + strand at 299.709 kb on + strand at 299.710 kb on - strand at 299.710 kb on - strand at 299.710 kb on - strand at 299.710 kb on - strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.711 kb on + strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.712 kb on - strand at 299.714 kb on + strand at 299.714 kb on + strand at 299.714 kb on + strand at 299.714 kb on + strand at 299.714 kb on + strand at 299.714 kb on + strand at 299.715 kb on - strand at 299.715 kb on - strand at 299.715 kb on - strand at 299.715 kb on - strand at 299.715 kb on - strand at 299.746 kb on + strand at 299.746 kb on + strand at 299.746 kb on + strand at 299.747 kb on - strand at 299.774 kb on + strand at 299.774 kb on + strand at 299.775 kb on - strand at 299.775 kb on - strand at 299.775 kb on - strand at 299.775 kb on - strand at 299.866 kb on + strand at 299.867 kb on - strand at 299.868 kb on - strand at 299.880 kb on + strand at 299.880 kb on + strand at 299.880 kb on + strand at 299.881 kb on - strand at 299.881 kb on - strand at 299.920 kb on + strand at 300.112 kb on + strand, within ABIE53_004128 at 300.113 kb on - strand, within ABIE53_004128 at 300.113 kb on - strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.276 kb on + strand, within ABIE53_004128 at 300.277 kb on - strand, within ABIE53_004128 at 300.277 kb on - strand, within ABIE53_004128 at 300.277 kb on - strand, within ABIE53_004128 at 300.277 kb on - strand, within ABIE53_004128 at 300.277 kb on - strand, within ABIE53_004128 at 300.277 kb on - strand, within ABIE53_004128 at 300.296 kb on + strand, within ABIE53_004128 at 300.296 kb on + strand, within ABIE53_004128 at 300.296 kb on + strand, within ABIE53_004128 at 300.297 kb on - strand, within ABIE53_004128 at 300.297 kb on - strand, within ABIE53_004128 at 300.297 kb on - strand, within ABIE53_004128 at 300.297 kb on - strand, within ABIE53_004128 at 300.481 kb on + strand at 300.481 kb on + strand at 300.481 kb on + strand at 300.482 kb on - strand at 300.482 kb on - strand at 300.482 kb on - strand at 300.482 kb on - strand at 300.488 kb on + strand at 300.561 kb on - strand at 300.570 kb on + strand at 300.570 kb on + strand at 300.570 kb on + strand at 300.705 kb on + strand, within ABIE53_004129 at 300.705 kb on + strand, within ABIE53_004129 at 300.706 kb on - strand, within ABIE53_004129 at 300.706 kb on - strand, within ABIE53_004129 at 300.706 kb on - strand, within ABIE53_004129 at 300.706 kb on - strand, within ABIE53_004129 at 300.706 kb on - strand, within ABIE53_004129 at 300.706 kb on - strand, within ABIE53_004129 at 300.706 kb on - strand, within ABIE53_004129 at 300.727 kb on - strand, within ABIE53_004129 at 301.044 kb on - strand, within ABIE53_004129 at 301.044 kb on - strand, within ABIE53_004129 at 301.056 kb on + strand, within ABIE53_004129 at 301.057 kb on - strand, within ABIE53_004129
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=no_plant; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 298,929 + ABIE53_004127 0.36 -1.0 298,929 + ABIE53_004127 0.36 -2.6 298,929 + ABIE53_004127 0.36 -2.9 298,929 + ABIE53_004127 0.36 -0.6 298,929 + ABIE53_004127 0.36 -0.3 298,930 - ABIE53_004127 0.36 +2.9 298,930 - ABIE53_004127 0.36 -0.9 298,930 - ABIE53_004127 0.36 +0.2 298,932 + ABIE53_004127 0.36 -0.4 298,932 + ABIE53_004127 0.36 -0.9 298,933 - ABIE53_004127 0.36 -1.1 298,933 - ABIE53_004127 0.36 -1.0 298,995 + ABIE53_004127 0.42 +1.9 298,995 + ABIE53_004127 0.42 -1.9 298,996 - ABIE53_004127 0.42 -0.8 298,996 - ABIE53_004127 0.42 -1.9 298,996 - ABIE53_004127 0.42 -0.3 298,996 - ABIE53_004127 0.42 -0.2 298,996 - ABIE53_004127 0.42 -0.9 299,112 + ABIE53_004127 0.54 +0.0 299,112 + ABIE53_004127 0.54 -0.1 299,112 + ABIE53_004127 0.54 +0.4 299,112 + ABIE53_004127 0.54 -1.1 299,113 - ABIE53_004127 0.55 +0.0 299,113 - ABIE53_004127 0.55 +0.9 299,114 + ABIE53_004127 0.55 -0.5 299,114 + ABIE53_004127 0.55 +2.9 299,114 + ABIE53_004127 0.55 +1.9 299,115 - ABIE53_004127 0.55 +0.5 299,115 - ABIE53_004127 0.55 -2.3 299,115 - ABIE53_004127 0.55 +0.5 299,115 - ABIE53_004127 0.55 +0.9 299,231 + ABIE53_004127 0.67 -0.4 299,231 + ABIE53_004127 0.67 -0.9 299,247 + ABIE53_004127 0.68 +0.6 299,248 - ABIE53_004127 0.68 -0.7 299,248 - ABIE53_004127 0.68 +1.3 299,248 - ABIE53_004127 0.68 +0.0 299,248 - ABIE53_004127 0.68 -1.1 299,484 + -0.2 299,484 + -1.1 299,484 + +0.1 299,484 + +0.3 299,484 + -1.3 299,485 - -0.6 299,485 - -1.0 299,485 - -0.3 299,485 - +0.1 299,485 - -0.1 299,485 - -0.5 299,542 + -0.0 299,543 - +0.3 299,554 + +0.9 299,554 + +0.8 299,555 - +1.6 299,659 + -0.1 299,675 + -1.4 299,675 + +0.8 299,675 + +0.8 299,676 - -0.6 299,676 - +0.3 299,709 + +1.0 299,709 + +0.2 299,709 + -0.7 299,709 + -1.4 299,709 + +0.6 299,710 - -0.1 299,710 - -0.2 299,710 - +0.7 299,710 - -0.1 299,711 + +1.9 299,711 + -0.1 299,711 + -2.1 299,711 + +0.1 299,711 + -0.4 299,711 + -0.1 299,711 + -0.1 299,711 + +0.3 299,711 + +0.4 299,711 + -0.5 299,711 + -0.7 299,711 + -0.0 299,711 + +1.9 299,712 - -0.7 299,712 - -0.1 299,712 - +1.2 299,712 - +1.4 299,712 - -0.7 299,712 - -1.9 299,712 - -0.5 299,712 - +2.5 299,712 - +0.2 299,712 - +0.9 299,712 - +0.4 299,714 + -0.9 299,714 + -0.1 299,714 + -0.9 299,714 + +0.2 299,714 + -2.1 299,714 + -0.1 299,715 - -0.8 299,715 - +0.6 299,715 - +1.9 299,715 - -0.1 299,715 - +1.0 299,746 + +0.9 299,746 + -0.4 299,746 + -1.1 299,747 - -0.7 299,774 + -1.4 299,774 + +1.9 299,775 - -0.3 299,775 - +0.9 299,775 - -1.4 299,775 - -0.2 299,866 + +0.3 299,867 - +1.4 299,868 - +0.5 299,880 + -0.7 299,880 + -1.1 299,880 + -0.6 299,881 - +0.3 299,881 - -2.3 299,920 + -0.0 300,112 + ABIE53_004128 0.37 -0.7 300,113 - ABIE53_004128 0.37 -0.3 300,113 - ABIE53_004128 0.37 +0.2 300,276 + ABIE53_004128 0.61 -0.7 300,276 + ABIE53_004128 0.61 -0.4 300,276 + ABIE53_004128 0.61 +0.3 300,276 + ABIE53_004128 0.61 +1.4 300,276 + ABIE53_004128 0.61 -0.0 300,276 + ABIE53_004128 0.61 -0.1 300,276 + ABIE53_004128 0.61 -0.9 300,276 + ABIE53_004128 0.61 +0.4 300,276 + ABIE53_004128 0.61 -0.2 300,276 + ABIE53_004128 0.61 +0.8 300,276 + ABIE53_004128 0.61 +0.7 300,277 - ABIE53_004128 0.61 +1.2 300,277 - ABIE53_004128 0.61 +0.9 300,277 - ABIE53_004128 0.61 +1.3 300,277 - ABIE53_004128 0.61 -0.4 300,277 - ABIE53_004128 0.61 -3.1 300,277 - ABIE53_004128 0.61 +0.6 300,296 + ABIE53_004128 0.64 -0.3 300,296 + ABIE53_004128 0.64 +0.9 300,296 + ABIE53_004128 0.64 -0.9 300,297 - ABIE53_004128 0.64 +0.4 300,297 - ABIE53_004128 0.64 +1.5 300,297 - ABIE53_004128 0.64 -0.1 300,297 - ABIE53_004128 0.64 -0.5 300,481 + +0.6 300,481 + -0.7 300,481 + +1.6 300,482 - -0.2 300,482 - +0.6 300,482 - -0.7 300,482 - +0.1 300,488 + -0.1 300,561 - -0.1 300,570 + -0.1 300,570 + -0.2 300,570 + +0.1 300,705 + ABIE53_004129 0.17 -0.0 300,705 + ABIE53_004129 0.17 -2.7 300,706 - ABIE53_004129 0.17 -1.3 300,706 - ABIE53_004129 0.17 -0.4 300,706 - ABIE53_004129 0.17 -1.7 300,706 - ABIE53_004129 0.17 -0.5 300,706 - ABIE53_004129 0.17 +0.1 300,706 - ABIE53_004129 0.17 +0.9 300,706 - ABIE53_004129 0.17 -0.1 300,727 - ABIE53_004129 0.20 +0.6 301,044 - ABIE53_004129 0.69 -0.3 301,044 - ABIE53_004129 0.69 -2.3 301,056 + ABIE53_004129 0.71 -1.4 301,057 - ABIE53_004129 0.71 -1.6
Or see this region's nucleotide sequence