Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0071

Experiment: MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhaO and dinP are separated by 517 nucleotidesdinP and mpg are separated by 405 nucleotides DVU0070: yhaO - Ser/Thr protein phosphatase family protein (TIGR), at 85,666 to 87,021 yhaO DVU0071: dinP - DNA polymerase IV (TIGR), at 87,539 to 88,699 dinP DVU0072: mpg - glucose-1-phosphate cytidylyl-transferase (TIGR), at 89,105 to 89,884 mpg Position (kb) 87 88 89Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 86.637 kb on - strand, within yhaOat 86.732 kb on + strand, within yhaOat 86.791 kb on + strand, within yhaOat 86.838 kb on - strand, within yhaOat 86.873 kb on + strand, within yhaOat 86.886 kb on - strandat 86.891 kb on - strandat 86.920 kb on + strandat 86.920 kb on + strandat 86.928 kb on - strandat 86.928 kb on - strandat 86.928 kb on - strandat 86.928 kb on - strandat 86.981 kb on + strandat 86.996 kb on - strandat 87.000 kb on + strandat 87.001 kb on + strandat 87.008 kb on + strandat 87.093 kb on + strandat 87.106 kb on - strandat 87.111 kb on - strandat 87.135 kb on + strandat 87.206 kb on - strandat 87.225 kb on + strandat 87.225 kb on + strandat 87.225 kb on + strandat 87.268 kb on + strandat 87.286 kb on + strandat 87.301 kb on + strandat 87.311 kb on + strandat 87.330 kb on - strandat 87.332 kb on + strandat 87.337 kb on + strandat 87.391 kb on + strandat 87.391 kb on + strandat 87.391 kb on + strandat 87.391 kb on + strandat 87.391 kb on + strandat 87.391 kb on + strandat 87.391 kb on + strandat 87.399 kb on - strandat 87.399 kb on - strandat 87.402 kb on + strandat 87.411 kb on + strandat 87.436 kb on - strandat 87.466 kb on - strandat 87.466 kb on - strandat 87.492 kb on - strandat 87.495 kb on + strandat 87.530 kb on - strandat 87.536 kb on + strandat 87.544 kb on - strandat 87.596 kb on - strandat 87.639 kb on + strandat 87.670 kb on + strand, within dinPat 87.672 kb on + strand, within dinPat 87.672 kb on + strand, within dinPat 87.672 kb on + strand, within dinPat 87.678 kb on - strand, within dinPat 87.680 kb on - strand, within dinPat 87.680 kb on - strand, within dinPat 87.701 kb on - strand, within dinPat 87.707 kb on - strand, within dinPat 87.783 kb on + strand, within dinPat 87.786 kb on - strand, within dinPat 87.796 kb on - strand, within dinPat 87.820 kb on + strand, within dinPat 87.828 kb on - strand, within dinPat 87.854 kb on + strand, within dinPat 87.862 kb on - strand, within dinPat 87.878 kb on + strand, within dinPat 87.890 kb on + strand, within dinPat 87.905 kb on + strand, within dinPat 87.906 kb on - strand, within dinPat 87.937 kb on - strand, within dinPat 87.942 kb on - strand, within dinPat 87.944 kb on - strand, within dinPat 87.964 kb on - strand, within dinPat 88.008 kb on + strand, within dinPat 88.066 kb on + strand, within dinPat 88.106 kb on - strand, within dinPat 88.106 kb on - strand, within dinPat 88.141 kb on - strand, within dinPat 88.141 kb on - strand, within dinPat 88.156 kb on - strand, within dinPat 88.156 kb on - strand, within dinPat 88.182 kb on + strand, within dinPat 88.192 kb on + strand, within dinPat 88.200 kb on - strand, within dinPat 88.217 kb on - strand, within dinPat 88.257 kb on + strand, within dinPat 88.265 kb on - strand, within dinPat 88.265 kb on - strand, within dinPat 88.332 kb on - strand, within dinPat 88.422 kb on + strand, within dinPat 88.432 kb on + strand, within dinPat 88.432 kb on + strand, within dinPat 88.440 kb on - strand, within dinPat 88.459 kb on - strand, within dinPat 88.479 kb on - strand, within dinPat 88.497 kb on + strand, within dinPat 88.505 kb on - strand, within dinPat 88.505 kb on - strand, within dinPat 88.633 kb on - strandat 88.702 kb on - strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.715 kb on + strandat 88.723 kb on - strandat 88.723 kb on - strandat 88.723 kb on - strandat 88.723 kb on - strandat 88.848 kb on - strandat 88.891 kb on + strandat 88.899 kb on - strandat 88.902 kb on + strandat 89.032 kb on + strandat 89.071 kb on - strandat 89.102 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient
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86,637 - yhaO DVU0070 0.72 +0.3
86,732 + yhaO DVU0070 0.79 -0.0
86,791 + yhaO DVU0070 0.83 +0.1
86,838 - yhaO DVU0070 0.86 -1.8
86,873 + yhaO DVU0070 0.89 +0.7
86,886 - +2.9
86,891 - +3.0
86,920 + -1.1
86,920 + +0.4
86,928 - +0.2
86,928 - +0.1
86,928 - -1.0
86,928 - +1.5
86,981 + +0.2
86,996 - -2.9
87,000 + -0.9
87,001 + +0.0
87,008 + +0.1
87,093 + +0.3
87,106 - -0.1
87,111 - +0.8
87,135 + -0.5
87,206 - -2.1
87,225 + -0.3
87,225 + -0.8
87,225 + -0.6
87,268 + +0.0
87,286 + +2.3
87,301 + -0.3
87,311 + +0.6
87,330 - -0.7
87,332 + -2.2
87,337 + +0.7
87,391 + +0.1
87,391 + +0.4
87,391 + +0.2
87,391 + +0.3
87,391 + -0.4
87,391 + +0.7
87,391 + -0.1
87,399 - -1.4
87,399 - -0.2
87,402 + +0.4
87,411 + +1.0
87,436 - -0.5
87,466 - -0.5
87,466 - -0.9
87,492 - +1.9
87,495 + -0.5
87,530 - -0.0
87,536 + -2.4
87,544 - -0.3
87,596 - -1.5
87,639 + -0.7
87,670 + dinP DVU0071 0.11 +0.1
87,672 + dinP DVU0071 0.11 +0.5
87,672 + dinP DVU0071 0.11 -2.3
87,672 + dinP DVU0071 0.11 +1.0
87,678 - dinP DVU0071 0.12 -0.0
87,680 - dinP DVU0071 0.12 +1.0
87,680 - dinP DVU0071 0.12 +0.4
87,701 - dinP DVU0071 0.14 -0.1
87,707 - dinP DVU0071 0.14 -0.2
87,783 + dinP DVU0071 0.21 -0.3
87,786 - dinP DVU0071 0.21 -0.9
87,796 - dinP DVU0071 0.22 -1.0
87,820 + dinP DVU0071 0.24 -0.5
87,828 - dinP DVU0071 0.25 +0.4
87,854 + dinP DVU0071 0.27 -0.3
87,862 - dinP DVU0071 0.28 -0.9
87,878 + dinP DVU0071 0.29 -0.5
87,890 + dinP DVU0071 0.30 -3.5
87,905 + dinP DVU0071 0.32 -1.1
87,906 - dinP DVU0071 0.32 -0.7
87,937 - dinP DVU0071 0.34 -2.0
87,942 - dinP DVU0071 0.35 -0.6
87,944 - dinP DVU0071 0.35 +0.3
87,964 - dinP DVU0071 0.37 -0.3
88,008 + dinP DVU0071 0.40 +0.2
88,066 + dinP DVU0071 0.45 -1.2
88,106 - dinP DVU0071 0.49 +1.4
88,106 - dinP DVU0071 0.49 -0.3
88,141 - dinP DVU0071 0.52 -0.0
88,141 - dinP DVU0071 0.52 +0.3
88,156 - dinP DVU0071 0.53 -0.1
88,156 - dinP DVU0071 0.53 +0.4
88,182 + dinP DVU0071 0.55 -1.7
88,192 + dinP DVU0071 0.56 +1.0
88,200 - dinP DVU0071 0.57 +0.5
88,217 - dinP DVU0071 0.58 -0.8
88,257 + dinP DVU0071 0.62 +1.3
88,265 - dinP DVU0071 0.63 -1.2
88,265 - dinP DVU0071 0.63 +0.3
88,332 - dinP DVU0071 0.68 +0.5
88,422 + dinP DVU0071 0.76 +0.4
88,432 + dinP DVU0071 0.77 +0.1
88,432 + dinP DVU0071 0.77 -0.2
88,440 - dinP DVU0071 0.78 +0.8
88,459 - dinP DVU0071 0.79 -0.0
88,479 - dinP DVU0071 0.81 -1.1
88,497 + dinP DVU0071 0.83 -0.4
88,505 - dinP DVU0071 0.83 -0.3
88,505 - dinP DVU0071 0.83 -0.2
88,633 - +0.3
88,702 - -0.1
88,715 + -0.4
88,715 + -0.3
88,715 + -0.2
88,715 + -0.0
88,715 + +1.3
88,715 + +0.3
88,715 + +0.5
88,723 - -0.2
88,723 - -0.7
88,723 - +0.7
88,723 - -0.1
88,848 - -1.0
88,891 + -0.7
88,899 - -0.0
88,902 + -0.2
89,032 + +0.1
89,071 - +0.2
89,102 - +0.3

Or see this region's nucleotide sequence