Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3306

Experiment: MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatoC and DVU3306 are separated by 229 nucleotidesDVU3306 and tRNA-Arg are separated by 46 nucleotidestRNA-Arg and ubiX are separated by 243 nucleotides DVU3305: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 3,482,737 to 3,484,092 atoC DVU3306: DVU3306 - hypothetical protein (TIGR), at 3,484,322 to 3,484,486 DVU3306 DVU_tRNA-Arg-6: tRNA-Arg - tRNA with anticodon CCG for Arg (VIMSS-AUTO), at 3,484,533 to 3,484,609 tRNA-Arg DVU3307: ubiX - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (TIGR), at 3,484,853 to 3,485,416 ubiX Position (kb) 3484 3485Strain fitness (log2 ratio) -3 -2 -1 0 1at 3483.350 kb on - strand, within atoCat 3483.429 kb on - strand, within atoCat 3483.434 kb on - strand, within atoCat 3483.449 kb on - strand, within atoCat 3483.464 kb on + strand, within atoCat 3483.524 kb on - strand, within atoCat 3483.524 kb on - strand, within atoCat 3483.629 kb on - strand, within atoCat 3483.643 kb on + strand, within atoCat 3483.644 kb on + strand, within atoCat 3483.714 kb on + strand, within atoCat 3483.784 kb on - strand, within atoCat 3483.813 kb on + strand, within atoCat 3483.813 kb on + strand, within atoCat 3483.821 kb on - strand, within atoCat 3483.850 kb on + strand, within atoCat 3483.852 kb on + strand, within atoCat 3483.853 kb on - strand, within atoCat 3483.870 kb on + strand, within atoCat 3483.900 kb on + strand, within atoCat 3483.951 kb on - strand, within atoCat 3483.958 kb on - strandat 3483.970 kb on + strandat 3484.079 kb on - strandat 3484.175 kb on - strandat 3484.202 kb on + strandat 3484.288 kb on + strandat 3484.291 kb on - strandat 3484.291 kb on - strandat 3484.293 kb on + strandat 3484.293 kb on + strandat 3484.296 kb on - strandat 3484.312 kb on + strandat 3484.398 kb on - strand, within DVU3306at 3484.398 kb on - strand, within DVU3306at 3484.398 kb on - strand, within DVU3306at 3484.399 kb on - strand, within DVU3306at 3484.413 kb on - strand, within DVU3306at 3484.656 kb on + strandat 3484.669 kb on - strandat 3484.669 kb on - strandat 3484.751 kb on - strandat 3484.850 kb on + strandat 3485.409 kb on + strandat 3485.417 kb on + strandat 3485.432 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient
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3,483,350 - atoC DVU3305 0.45 -0.1
3,483,429 - atoC DVU3305 0.51 +0.6
3,483,434 - atoC DVU3305 0.51 +0.7
3,483,449 - atoC DVU3305 0.53 -0.1
3,483,464 + atoC DVU3305 0.54 -0.7
3,483,524 - atoC DVU3305 0.58 -1.0
3,483,524 - atoC DVU3305 0.58 -0.5
3,483,629 - atoC DVU3305 0.66 +0.8
3,483,643 + atoC DVU3305 0.67 -2.0
3,483,644 + atoC DVU3305 0.67 -0.2
3,483,714 + atoC DVU3305 0.72 -2.0
3,483,784 - atoC DVU3305 0.77 +0.5
3,483,813 + atoC DVU3305 0.79 -0.2
3,483,813 + atoC DVU3305 0.79 +0.3
3,483,821 - atoC DVU3305 0.80 -0.6
3,483,850 + atoC DVU3305 0.82 -2.3
3,483,852 + atoC DVU3305 0.82 +0.1
3,483,853 - atoC DVU3305 0.82 -0.3
3,483,870 + atoC DVU3305 0.84 -0.4
3,483,900 + atoC DVU3305 0.86 +0.3
3,483,951 - atoC DVU3305 0.90 +0.5
3,483,958 - +0.3
3,483,970 + -1.4
3,484,079 - +0.2
3,484,175 - -0.4
3,484,202 + +0.1
3,484,288 + -0.6
3,484,291 - +0.4
3,484,291 - -3.3
3,484,293 + -1.2
3,484,293 + +0.2
3,484,296 - +0.4
3,484,312 + -0.5
3,484,398 - DVU3306 0.46 -1.9
3,484,398 - DVU3306 0.46 -2.0
3,484,398 - DVU3306 0.46 -0.9
3,484,399 - DVU3306 0.47 -0.5
3,484,413 - DVU3306 0.55 -1.2
3,484,656 + -0.0
3,484,669 - +0.1
3,484,669 - +0.4
3,484,751 - +0.3
3,484,850 + +0.3
3,485,409 + -2.7
3,485,417 + -1.3
3,485,432 + -0.0

Or see this region's nucleotide sequence