Experiment: MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt atoC and DVU3306 are separated by 229 nucleotides DVU3306 and tRNA-Arg are separated by 46 nucleotides tRNA-Arg and ubiX are separated by 243 nucleotides
DVU3305: atoC - sigma-54 dependent transcriptional regulator/response regulator (TIGR), at 3,482,737 to 3,484,092
atoC
DVU3306: DVU3306 - hypothetical protein (TIGR), at 3,484,322 to 3,484,486
DVU3306
DVU_tRNA-Arg-6: tRNA-Arg - tRNA with anticodon CCG for Arg (VIMSS-AUTO), at 3,484,533 to 3,484,609
tRNA-Arg
DVU3307: ubiX - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (TIGR), at 3,484,853 to 3,485,416
ubiX
Position (kb)
3484
3485 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3483.350 kb on - strand, within atoC at 3483.429 kb on - strand, within atoC at 3483.434 kb on - strand, within atoC at 3483.449 kb on - strand, within atoC at 3483.464 kb on + strand, within atoC at 3483.524 kb on - strand, within atoC at 3483.524 kb on - strand, within atoC at 3483.629 kb on - strand, within atoC at 3483.643 kb on + strand, within atoC at 3483.644 kb on + strand, within atoC at 3483.714 kb on + strand, within atoC at 3483.784 kb on - strand, within atoC at 3483.813 kb on + strand, within atoC at 3483.813 kb on + strand, within atoC at 3483.821 kb on - strand, within atoC at 3483.850 kb on + strand, within atoC at 3483.852 kb on + strand, within atoC at 3483.853 kb on - strand, within atoC at 3483.870 kb on + strand, within atoC at 3483.900 kb on + strand, within atoC at 3483.951 kb on - strand, within atoC at 3483.958 kb on - strand at 3483.970 kb on + strand at 3484.079 kb on - strand at 3484.175 kb on - strand at 3484.202 kb on + strand at 3484.288 kb on + strand at 3484.291 kb on - strand at 3484.291 kb on - strand at 3484.293 kb on + strand at 3484.293 kb on + strand at 3484.296 kb on - strand at 3484.312 kb on + strand at 3484.398 kb on - strand, within DVU3306 at 3484.398 kb on - strand, within DVU3306 at 3484.398 kb on - strand, within DVU3306 at 3484.399 kb on - strand, within DVU3306 at 3484.413 kb on - strand, within DVU3306 at 3484.656 kb on + strand at 3484.669 kb on - strand at 3484.669 kb on - strand at 3484.751 kb on - strand at 3484.850 kb on + strand at 3485.409 kb on + strand at 3485.417 kb on + strand at 3485.432 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient remove 3,483,350 - atoC DVU3305 0.45 -0.1 3,483,429 - atoC DVU3305 0.51 +0.6 3,483,434 - atoC DVU3305 0.51 +0.7 3,483,449 - atoC DVU3305 0.53 -0.1 3,483,464 + atoC DVU3305 0.54 -0.7 3,483,524 - atoC DVU3305 0.58 -1.0 3,483,524 - atoC DVU3305 0.58 -0.5 3,483,629 - atoC DVU3305 0.66 +0.8 3,483,643 + atoC DVU3305 0.67 -2.0 3,483,644 + atoC DVU3305 0.67 -0.2 3,483,714 + atoC DVU3305 0.72 -2.0 3,483,784 - atoC DVU3305 0.77 +0.5 3,483,813 + atoC DVU3305 0.79 -0.2 3,483,813 + atoC DVU3305 0.79 +0.3 3,483,821 - atoC DVU3305 0.80 -0.6 3,483,850 + atoC DVU3305 0.82 -2.3 3,483,852 + atoC DVU3305 0.82 +0.1 3,483,853 - atoC DVU3305 0.82 -0.3 3,483,870 + atoC DVU3305 0.84 -0.4 3,483,900 + atoC DVU3305 0.86 +0.3 3,483,951 - atoC DVU3305 0.90 +0.5 3,483,958 - +0.3 3,483,970 + -1.4 3,484,079 - +0.2 3,484,175 - -0.4 3,484,202 + +0.1 3,484,288 + -0.6 3,484,291 - +0.4 3,484,291 - -3.3 3,484,293 + -1.2 3,484,293 + +0.2 3,484,296 - +0.4 3,484,312 + -0.5 3,484,398 - DVU3306 0.46 -1.9 3,484,398 - DVU3306 0.46 -2.0 3,484,398 - DVU3306 0.46 -0.9 3,484,399 - DVU3306 0.47 -0.5 3,484,413 - DVU3306 0.55 -1.2 3,484,656 + -0.0 3,484,669 - +0.1 3,484,669 - +0.4 3,484,751 - +0.3 3,484,850 + +0.3 3,485,409 + -2.7 3,485,417 + -1.3 3,485,432 + -0.0
Or see this region's nucleotide sequence