Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1077

Experiment: MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1073 and rpmH are separated by 203 nucleotidesrpmH and rnpA are separated by 86 nucleotidesrnpA and DVU1076 overlap by 4 nucleotidesDVU1076 and yidC are separated by 7 nucleotidesyidC and DVU1078 are separated by 38 nucleotides DVU1073: DVU1073 - conserved domain protein (TIGR), at 1,177,463 to 1,178,389 DVU1073 DVU1074: rpmH - ribosomal protein L34 (TIGR), at 1,178,593 to 1,178,727 rpmH DVU1075: rnpA - ribonuclease P protein component (TIGR), at 1,178,814 to 1,179,104 rnpA DVU1076: DVU1076 - conserved hypothetical protein TIGR00278 (TIGR), at 1,179,101 to 1,179,361 DVU1076 DVU1077: yidC - inner membrane protein, 60 kDa (TIGR), at 1,179,369 to 1,180,973 yidC DVU1078: DVU1078 - R3H domain protein (TIGR), at 1,181,012 to 1,182,304 DVU1078 Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -1 0 1at 1178.373 kb on + strandat 1178.414 kb on + strandat 1178.454 kb on - strandat 1178.468 kb on + strandat 1179.062 kb on + strand, within rnpAat 1179.118 kb on - strandat 1179.311 kb on - strand, within DVU1076at 1180.980 kb on + strandat 1181.051 kb on - strandat 1181.167 kb on + strand, within DVU1078at 1181.167 kb on + strand, within DVU1078at 1181.170 kb on - strand, within DVU1078at 1181.188 kb on + strand, within DVU1078at 1181.264 kb on + strand, within DVU1078at 1181.336 kb on + strand, within DVU1078at 1181.346 kb on - strand, within DVU1078at 1181.432 kb on + strand, within DVU1078at 1181.499 kb on - strand, within DVU1078at 1181.499 kb on - strand, within DVU1078at 1181.515 kb on + strand, within DVU1078at 1181.634 kb on - strand, within DVU1078at 1181.656 kb on - strand, within DVU1078at 1181.656 kb on - strand, within DVU1078at 1181.684 kb on + strand, within DVU1078at 1181.826 kb on + strand, within DVU1078at 1181.850 kb on + strand, within DVU1078at 1181.852 kb on + strand, within DVU1078

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Valine (HPLC) and L-Leucine 10mM as nutrient
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1,178,373 + -1.5
1,178,414 + -0.5
1,178,454 - +0.4
1,178,468 + -1.4
1,179,062 + rnpA DVU1075 0.85 +1.1
1,179,118 - -1.0
1,179,311 - DVU1076 0.80 -1.4
1,180,980 + -1.4
1,181,051 - +0.6
1,181,167 + DVU1078 0.12 +0.4
1,181,167 + DVU1078 0.12 +0.3
1,181,170 - DVU1078 0.12 +0.3
1,181,188 + DVU1078 0.14 +0.3
1,181,264 + DVU1078 0.19 -0.2
1,181,336 + DVU1078 0.25 +0.4
1,181,346 - DVU1078 0.26 +0.5
1,181,432 + DVU1078 0.32 +0.3
1,181,499 - DVU1078 0.38 -0.8
1,181,499 - DVU1078 0.38 +0.3
1,181,515 + DVU1078 0.39 +0.2
1,181,634 - DVU1078 0.48 +0.1
1,181,656 - DVU1078 0.50 +0.2
1,181,656 - DVU1078 0.50 +0.8
1,181,684 + DVU1078 0.52 +1.3
1,181,826 + DVU1078 0.63 +0.5
1,181,850 + DVU1078 0.65 -0.1
1,181,852 + DVU1078 0.65 +0.3

Or see this region's nucleotide sequence