Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS06850

Experiment: Betaine (C)(N); with TAPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Betaine (C)(N); with TAPS
1,533,888	+		PFLU_RS06845	0.15	-0.1
1,533,888	+		PFLU_RS06845	0.15	-0.2
1,533,889	-		PFLU_RS06845	0.15	-0.2
1,533,889	-		PFLU_RS06845	0.15	+0.6
1,533,889	-		PFLU_RS06845	0.15	-1.0
1,533,944	+		PFLU_RS06845	0.20	+0.6
1,533,944	+		PFLU_RS06845	0.20	+0.3
1,533,944	+		PFLU_RS06845	0.20	-0.6
1,533,944	+		PFLU_RS06845	0.20	+0.2
1,533,944	+		PFLU_RS06845	0.20	+0.4
1,533,944	+		PFLU_RS06845	0.20	-0.6
1,533,945	-		PFLU_RS06845	0.20	-0.2
1,533,945	-		PFLU_RS06845	0.20	+0.6
1,533,945	-		PFLU_RS06845	0.20	-0.1
1,533,945	-		PFLU_RS06845	0.20	+0.2
1,533,945	-		PFLU_RS06845	0.20	+0.9
1,533,945	-		PFLU_RS06845	0.20	-1.4
1,533,945	-		PFLU_RS06845	0.20	+0.9
1,533,945	-		PFLU_RS06845	0.20	+0.3
1,534,052	+		PFLU_RS06845	0.30	+3.0
1,534,052	+		PFLU_RS06845	0.30	+1.0
1,534,052	+		PFLU_RS06845	0.30	+0.2
1,534,052	+		PFLU_RS06845	0.30	-0.9
1,534,052	+		PFLU_RS06845	0.30	-1.4
1,534,052	+		PFLU_RS06845	0.30	+0.5
1,534,052	+		PFLU_RS06845	0.30	+0.2
1,534,052	+		PFLU_RS06845	0.30	-0.5
1,534,052	+		PFLU_RS06845	0.30	-0.0
1,534,052	+		PFLU_RS06845	0.30	+0.5
1,534,052	+		PFLU_RS06845	0.30	-1.5
1,534,053	-		PFLU_RS06845	0.30	-1.1
1,534,053	-		PFLU_RS06845	0.30	+0.5
1,534,053	-		PFLU_RS06845	0.30	-0.3
1,534,053	-		PFLU_RS06845	0.30	+0.6
1,534,053	-		PFLU_RS06845	0.30	-0.5
1,534,053	-		PFLU_RS06845	0.30	-0.0
1,534,053	-		PFLU_RS06845	0.30	+0.4
1,534,053	-		PFLU_RS06845	0.30	+1.6
1,534,053	-		PFLU_RS06845	0.30	-0.2
1,534,053	-		PFLU_RS06845	0.30	-0.5
1,534,053	-		PFLU_RS06845	0.30	+0.2
1,534,053	-		PFLU_RS06845	0.30	+0.4
1,534,053	-		PFLU_RS06845	0.30	-0.7
1,534,053	-		PFLU_RS06845	0.30	+0.3
1,534,053	-		PFLU_RS06845	0.30	+0.4
1,534,222	-		PFLU_RS06845	0.46	+0.0
1,534,222	-		PFLU_RS06845	0.46	+0.9
1,534,222	-		PFLU_RS06845	0.46	+1.2
1,534,222	-		PFLU_RS06845	0.46	+1.2
1,534,256	+		PFLU_RS06845	0.50	+0.7
1,534,325	+		PFLU_RS06845	0.56	-0.7
1,534,416	+		PFLU_RS06845	0.65	-2.2
1,534,416	+		PFLU_RS06845	0.65	+0.6
1,534,417	-		PFLU_RS06845	0.65	+0.4
1,534,460	+		PFLU_RS06845	0.69	+0.2
1,534,460	+		PFLU_RS06845	0.69	-0.1
1,534,460	+		PFLU_RS06845	0.69	+0.5
1,534,461	-		PFLU_RS06845	0.69	+0.1
1,534,476	+		PFLU_RS06845	0.70	+1.4
1,534,476	+		PFLU_RS06845	0.70	-2.0
1,534,477	-		PFLU_RS06845	0.70	+1.4
1,534,477	-		PFLU_RS06845	0.70	+0.4
1,534,661	+		PFLU_RS06845	0.88	-0.7
1,534,661	+		PFLU_RS06845	0.88	+0.1
1,534,661	+		PFLU_RS06845	0.88	-2.1
1,534,661	+		PFLU_RS06845	0.88	-0.5
1,534,661	+		PFLU_RS06845	0.88	-0.5
1,534,661	+		PFLU_RS06845	0.88	-0.0
1,534,661	+		PFLU_RS06845	0.88	-1.3
1,534,661	+		PFLU_RS06845	0.88	-0.3
1,534,661	+		PFLU_RS06845	0.88	-0.1
1,534,661	+		PFLU_RS06845	0.88	-0.4
1,534,661	+		PFLU_RS06845	0.88	-0.4
1,534,661	+		PFLU_RS06845	0.88	+2.2
1,534,661	+		PFLU_RS06845	0.88	+0.8
1,534,661	+		PFLU_RS06845	0.88	-2.1
1,534,661	+		PFLU_RS06845	0.88	-2.0
1,534,661	+		PFLU_RS06845	0.88	+0.1
1,534,661	+		PFLU_RS06845	0.88	+0.4
1,534,661	+		PFLU_RS06845	0.88	-0.7
1,534,662	-		PFLU_RS06845	0.88	+0.6
1,534,662	-		PFLU_RS06845	0.88	-0.6
1,534,662	-		PFLU_RS06845	0.88	-2.7
1,534,662	-		PFLU_RS06845	0.88	-0.8
1,534,662	-		PFLU_RS06845	0.88	+1.1
1,534,662	-		PFLU_RS06845	0.88	-1.8
1,534,662	-		PFLU_RS06845	0.88	-0.7
1,534,662	-		PFLU_RS06845	0.88	+0.1
1,534,662	-		PFLU_RS06845	0.88	+0.2
1,534,662	-		PFLU_RS06845	0.88	+0.6
1,534,662	-		PFLU_RS06845	0.88	-0.1
1,534,662	-		PFLU_RS06845	0.88	-1.4
1,534,662	-		PFLU_RS06845	0.88	-0.1
1,534,662	-		PFLU_RS06845	0.88	-1.2
1,534,662	-		PFLU_RS06845	0.88	+1.2
1,534,662	-		PFLU_RS06845	0.88	+1.2
1,534,664	+		PFLU_RS06845	0.88	-0.4
1,534,664	+		PFLU_RS06845	0.88	-0.3
1,534,664	+		PFLU_RS06845	0.88	+0.3
1,534,665	-		PFLU_RS06845	0.88	-0.3
1,534,665	-		PFLU_RS06845	0.88	-1.4
1,534,665	-		PFLU_RS06845	0.88	+0.2
1,534,808	+				-2.8
1,534,808	+				-1.0
1,534,808	+				+0.5
1,534,808	+				+1.0
1,534,808	+				+1.8
1,534,808	+				+0.4
1,534,808	+				+0.1
1,534,808	+				+1.0
1,534,809	-				-1.2
1,534,809	-				-1.6
1,534,866	+				-0.3
1,534,866	+				-0.0
1,534,866	+				-0.2
1,534,866	+				+2.8
1,534,866	+				-0.6
1,534,867	-				+0.1
1,534,867	-				+1.1
1,534,867	-				-0.2
1,534,867	-				-2.0
1,534,867	-				+0.0
1,534,867	-				+0.1
1,534,867	-				+1.8
1,534,888	+				-1.4
1,534,888	+				-0.3
1,534,889	-				-0.7
1,535,324	+		PFLU_RS06850	0.43	-0.5
1,535,324	+		PFLU_RS06850	0.43	+1.0
1,535,324	+		PFLU_RS06850	0.43	-0.6
1,535,324	+		PFLU_RS06850	0.43	-0.5
1,535,324	+		PFLU_RS06850	0.43	+0.4
1,535,324	+		PFLU_RS06850	0.43	-1.4
1,535,324	+		PFLU_RS06850	0.43	-1.9
1,535,324	+		PFLU_RS06850	0.43	+0.2
1,535,324	+		PFLU_RS06850	0.43	-0.3
1,535,325	-		PFLU_RS06850	0.43	+1.8
1,535,325	-		PFLU_RS06850	0.43	-1.4
1,535,325	-		PFLU_RS06850	0.43	-0.2
1,535,325	-		PFLU_RS06850	0.43	+0.2
1,535,325	-		PFLU_RS06850	0.43	-0.7
1,535,385	+		PFLU_RS06850	0.49	+2.3
1,535,385	+		PFLU_RS06850	0.49	-1.8
1,535,386	-		PFLU_RS06850	0.49	+0.6
1,535,386	-		PFLU_RS06850	0.49	-0.8
1,535,555	-		PFLU_RS06850	0.63	-1.9
1,535,578	+		PFLU_RS06850	0.65	-0.3
1,535,578	+		PFLU_RS06850	0.65	+0.4
1,535,656	-		PFLU_RS06850	0.72	-1.5
1,535,714	+		PFLU_RS06850	0.77	-1.8
1,535,714	+		PFLU_RS06850	0.77	-1.2
1,535,714	+		PFLU_RS06850	0.77	-1.9
1,535,714	+		PFLU_RS06850	0.77	-0.7
1,535,714	+		PFLU_RS06850	0.77	-1.0
1,535,714	+		PFLU_RS06850	0.77	+2.1
1,535,715	-		PFLU_RS06850	0.77	-1.7
1,535,715	-		PFLU_RS06850	0.77	-1.1
1,535,715	-		PFLU_RS06850	0.77	-0.4
1,535,715	-		PFLU_RS06850	0.77	-0.4
1,535,715	-		PFLU_RS06850	0.77	-1.7
1,535,715	-		PFLU_RS06850	0.77	-1.0
1,535,715	-		PFLU_RS06850	0.77	-0.1
1,535,965	+				+0.8
1,535,965	+				+0.7
1,535,965	+				-0.6
1,535,965	+				-0.4
1,535,966	-				+1.1
1,535,966	-				-2.0
1,535,966	-				-0.0
1,535,966	-				-0.2
1,535,966	-				+0.4
1,535,972	-				+1.0
1,535,972	-				-0.2
1,536,000	+				-0.2
1,536,000	+				+0.9
1,536,000	+				-0.0
1,536,000	+				+0.1
1,536,001	-				-0.1
1,536,001	-				-0.4
1,536,207	+		PFLU_RS06855	0.64	-0.6
1,536,278	+		PFLU_RS06855	0.85	-1.9
1,536,278	+		PFLU_RS06855	0.85	+0.7
1,536,278	+		PFLU_RS06855	0.85	-0.2
1,536,299	+				+0.2
1,536,299	+				-0.7
1,536,299	+				+0.4
1,536,299	+				-1.4
1,536,300	-				-0.7
1,536,300	-				+1.6
1,536,300	-				-0.2
1,536,302	+				+1.6
1,536,302	+				+0.1
1,536,303	-				+1.1
1,536,303	-				-2.1
1,536,303	-				-0.7
1,536,352	+				+0.0
1,536,353	-				+0.8
1,536,353	-				-0.7
1,536,355	-				+1.2
1,536,445	-				+0.5
1,536,451	-				-2.6
1,536,467	+				-0.5
1,536,467	+				+0.4
1,536,467	+				+0.1
1,536,467	+				-0.3
1,536,467	+				-1.0
1,536,468	-				+0.2
1,536,468	-				-1.8
1,536,468	-				-0.8
1,536,486	+				-1.5
1,536,486	+				+2.5
1,536,486	+				+0.3
1,536,487	-				+1.2
1,536,487	-				+0.3
1,536,487	-				+0.2
1,536,632	+		PFLU_RS06860	0.26	+0.2
1,536,632	+		PFLU_RS06860	0.26	+0.3
1,536,694	-		PFLU_RS06860	0.37	-1.0
1,536,753	+		PFLU_RS06860	0.47	+0.4
1,536,753	+		PFLU_RS06860	0.47	-0.2
1,536,753	+		PFLU_RS06860	0.47	-3.2
1,536,753	+		PFLU_RS06860	0.47	+0.8
1,536,753	+		PFLU_RS06860	0.47	-2.3
1,536,753	+		PFLU_RS06860	0.47	+1.8
1,536,753	+		PFLU_RS06860	0.47	+0.8
1,536,754	-		PFLU_RS06860	0.47	+1.0
1,536,849	+		PFLU_RS06860	0.63	+0.6
1,536,849	+		PFLU_RS06860	0.63	-0.9
1,536,849	+		PFLU_RS06860	0.63	-0.8
1,536,849	+		PFLU_RS06860	0.63	+0.1
1,536,849	+		PFLU_RS06860	0.63	-0.1
1,536,849	+		PFLU_RS06860	0.63	+0.7
1,536,850	-		PFLU_RS06860	0.63	-1.7
1,536,850	-		PFLU_RS06860	0.63	-0.9
1,536,850	-		PFLU_RS06860	0.63	+0.2
1,536,880	-		PFLU_RS06860	0.68	+0.1
1,536,981	+		PFLU_RS06860	0.86	-0.2
1,536,981	+		PFLU_RS06860	0.86	-1.7
1,536,981	+		PFLU_RS06860	0.86	-0.4
1,536,981	+		PFLU_RS06860	0.86	-0.2
1,536,981	+		PFLU_RS06860	0.86	-0.3
1,536,982	-		PFLU_RS06860	0.86	+1.3
1,536,982	-		PFLU_RS06860	0.86	+1.0
1,536,982	-		PFLU_RS06860	0.86	-1.4
1,536,982	-		PFLU_RS06860	0.86	-0.5