Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0447

Experiment: MoLS4 with L-Isoleucine and L-Leucine 10mM as nutrient

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0446 and DVU0447 overlap by 8 nucleotidesDVU0447 and gmd are separated by 393 nucleotides DVU0446: DVU0446 - sodium/solute symporter family protein (TIGR), at 506,042 to 507,589 DVU0446 DVU0447: DVU0447 - membrane protein, putative (TIGR), at 507,582 to 507,899 DVU0447 DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438 gmd Position (kb) 507 508Strain fitness (log2 ratio) -1 0 1 2at 506.693 kb on + strand, within DVU0446at 506.736 kb on - strand, within DVU0446at 506.796 kb on + strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.848 kb on - strand, within DVU0446at 506.887 kb on - strand, within DVU0446at 507.205 kb on - strand, within DVU0446at 507.209 kb on + strand, within DVU0446at 507.237 kb on - strand, within DVU0446at 507.330 kb on + strand, within DVU0446at 507.415 kb on + strand, within DVU0446at 507.446 kb on + strandat 507.451 kb on - strandat 507.477 kb on + strandat 507.535 kb on - strandat 507.560 kb on - strandat 507.560 kb on - strandat 507.562 kb on + strandat 507.562 kb on + strandat 507.570 kb on - strandat 507.570 kb on - strandat 507.570 kb on - strandat 507.607 kb on - strandat 507.685 kb on + strand, within DVU0447at 507.719 kb on + strand, within DVU0447at 507.782 kb on + strand, within DVU0447at 507.800 kb on + strand, within DVU0447at 507.811 kb on + strand, within DVU0447at 507.819 kb on - strand, within DVU0447at 507.863 kb on - strand, within DVU0447at 507.898 kb on - strandat 507.907 kb on + strandat 507.915 kb on - strandat 507.917 kb on - strandat 507.998 kb on - strandat 507.998 kb on - strandat 508.016 kb on + strandat 508.024 kb on - strandat 508.024 kb on - strandat 508.048 kb on - strandat 508.053 kb on - strandat 508.080 kb on + strandat 508.088 kb on - strandat 508.374 kb on - strandat 508.536 kb on + strand, within gmdat 508.544 kb on - strand, within gmdat 508.651 kb on + strand, within gmdat 508.826 kb on - strand, within gmdat 508.866 kb on + strand, within gmd

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Isoleucine and L-Leucine 10mM as nutrient
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506,693 + DVU0446 0.42 +0.5
506,736 - DVU0446 0.45 -0.7
506,796 + DVU0446 0.49 -0.2
506,804 - DVU0446 0.49 +1.1
506,804 - DVU0446 0.49 -0.5
506,804 - DVU0446 0.49 +2.5
506,848 - DVU0446 0.52 -1.1
506,887 - DVU0446 0.55 +0.1
507,205 - DVU0446 0.75 -0.7
507,209 + DVU0446 0.75 +0.5
507,237 - DVU0446 0.77 +0.2
507,330 + DVU0446 0.83 +0.9
507,415 + DVU0446 0.89 -0.2
507,446 + -0.3
507,451 - +0.8
507,477 + +0.1
507,535 - -0.1
507,560 - -0.2
507,560 - -0.7
507,562 + +1.1
507,562 + -0.4
507,570 - +0.4
507,570 - -0.2
507,570 - +0.3
507,607 - -0.3
507,685 + DVU0447 0.32 -0.6
507,719 + DVU0447 0.43 -0.3
507,782 + DVU0447 0.63 -0.8
507,800 + DVU0447 0.69 -0.7
507,811 + DVU0447 0.72 -1.2
507,819 - DVU0447 0.75 -0.1
507,863 - DVU0447 0.88 +0.1
507,898 - -0.8
507,907 + -0.2
507,915 - +2.1
507,917 - +0.7
507,998 - -0.0
507,998 - +0.1
508,016 + -0.1
508,024 - -0.4
508,024 - -0.3
508,048 - +0.0
508,053 - +2.5
508,080 + -0.0
508,088 - -1.1
508,374 - +2.5
508,536 + gmd DVU0448 0.21 +1.5
508,544 - gmd DVU0448 0.22 +2.5
508,651 + gmd DVU0448 0.31 +1.3
508,826 - gmd DVU0448 0.47 +0.9
508,866 + gmd DVU0448 0.50 +1.9

Or see this region's nucleotide sequence