Experiment: Post-colonization (Day 7) - Cage1A;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT1330 and BT1331 are separated by 83 nucleotides BT1331 and BT1332 are separated by 6 nucleotides BT1332 and BT1333 are separated by 15 nucleotides
BT1330: BT1330 - conserved hypothetical protein (NCBI ptt file), at 1,655,958 to 1,656,521
BT1330
BT1331: BT1331 - hypothetical protein (NCBI ptt file), at 1,656,605 to 1,657,084
BT1331
BT1332: BT1332 - conserved hypothetical protein (NCBI ptt file), at 1,657,091 to 1,657,765
BT1332
BT1333: BT1333 - putative dihydropyrimidine dehydrogenase [NADP+] precursor (NCBI ptt file), at 1,657,781 to 1,658,761
BT1333
Position (kb)
1657
1658 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1656.103 kb on + strand, within BT1330 at 1656.180 kb on + strand, within BT1330 at 1656.212 kb on - strand, within BT1330 at 1656.281 kb on + strand, within BT1330 at 1656.397 kb on + strand, within BT1330 at 1656.424 kb on + strand, within BT1330 at 1656.427 kb on - strand, within BT1330 at 1656.436 kb on - strand, within BT1330 at 1656.436 kb on - strand, within BT1330 at 1656.544 kb on + strand at 1656.616 kb on + strand at 1656.712 kb on + strand, within BT1331 at 1656.730 kb on + strand, within BT1331 at 1656.733 kb on + strand, within BT1331 at 1656.734 kb on - strand, within BT1331 at 1656.769 kb on + strand, within BT1331 at 1656.798 kb on - strand, within BT1331 at 1656.798 kb on - strand, within BT1331 at 1656.904 kb on + strand, within BT1331 at 1657.026 kb on + strand, within BT1331 at 1657.027 kb on - strand, within BT1331 at 1657.027 kb on - strand, within BT1331 at 1657.028 kb on + strand, within BT1331 at 1657.029 kb on - strand, within BT1331 at 1657.034 kb on + strand, within BT1331 at 1657.034 kb on + strand, within BT1331 at 1657.087 kb on - strand at 1657.111 kb on - strand at 1657.213 kb on + strand, within BT1332 at 1657.250 kb on - strand, within BT1332 at 1657.315 kb on + strand, within BT1332 at 1657.316 kb on - strand, within BT1332 at 1657.335 kb on + strand, within BT1332 at 1657.361 kb on + strand, within BT1332 at 1657.361 kb on + strand, within BT1332 at 1657.363 kb on + strand, within BT1332 at 1657.596 kb on + strand, within BT1332 at 1657.620 kb on + strand, within BT1332 at 1657.672 kb on + strand, within BT1332 at 1657.686 kb on - strand, within BT1332 at 1657.738 kb on - strand at 1657.760 kb on - strand at 1657.763 kb on + strand at 1657.873 kb on + strand at 1657.908 kb on + strand, within BT1333 at 1657.908 kb on + strand, within BT1333 at 1657.937 kb on - strand, within BT1333 at 1657.991 kb on + strand, within BT1333 at 1658.003 kb on + strand, within BT1333 at 1658.003 kb on + strand, within BT1333 at 1658.017 kb on + strand, within BT1333 at 1658.030 kb on + strand, within BT1333 at 1658.054 kb on - strand, within BT1333 at 1658.054 kb on - strand, within BT1333 at 1658.068 kb on + strand, within BT1333 at 1658.079 kb on + strand, within BT1333 at 1658.133 kb on + strand, within BT1333 at 1658.183 kb on + strand, within BT1333 at 1658.190 kb on + strand, within BT1333 at 1658.195 kb on + strand, within BT1333 at 1658.197 kb on + strand, within BT1333 at 1658.202 kb on - strand, within BT1333 at 1658.202 kb on - strand, within BT1333 at 1658.242 kb on + strand, within BT1333 at 1658.243 kb on - strand, within BT1333 at 1658.322 kb on + strand, within BT1333 at 1658.322 kb on + strand, within BT1333 at 1658.322 kb on + strand, within BT1333 at 1658.322 kb on + strand, within BT1333 at 1658.322 kb on + strand, within BT1333 at 1658.323 kb on - strand, within BT1333 at 1658.324 kb on + strand, within BT1333 at 1658.325 kb on - strand, within BT1333 at 1658.325 kb on - strand, within BT1333 at 1658.533 kb on - strand, within BT1333 at 1658.578 kb on + strand, within BT1333 at 1658.578 kb on + strand, within BT1333 at 1658.591 kb on - strand, within BT1333 at 1658.704 kb on + strand at 1658.710 kb on + strand at 1658.711 kb on - strand at 1658.722 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 7) - Cage1A;Mouse1 remove 1,656,103 + BT1330 0.26 -1.4 1,656,180 + BT1330 0.39 -0.0 1,656,212 - BT1330 0.45 -0.4 1,656,281 + BT1330 0.57 +0.0 1,656,397 + BT1330 0.78 -1.4 1,656,424 + BT1330 0.83 +1.0 1,656,427 - BT1330 0.83 +0.9 1,656,436 - BT1330 0.85 -1.5 1,656,436 - BT1330 0.85 -0.4 1,656,544 + -1.9 1,656,616 + -1.1 1,656,712 + BT1331 0.22 -2.3 1,656,730 + BT1331 0.26 -2.9 1,656,733 + BT1331 0.27 -1.7 1,656,734 - BT1331 0.27 -1.4 1,656,769 + BT1331 0.34 -2.6 1,656,798 - BT1331 0.40 +0.6 1,656,798 - BT1331 0.40 -1.5 1,656,904 + BT1331 0.62 -0.8 1,657,026 + BT1331 0.88 -2.1 1,657,027 - BT1331 0.88 -2.5 1,657,027 - BT1331 0.88 +0.2 1,657,028 + BT1331 0.88 -1.0 1,657,029 - BT1331 0.88 -1.2 1,657,034 + BT1331 0.89 -1.2 1,657,034 + BT1331 0.89 -0.6 1,657,087 - -1.0 1,657,111 - +0.2 1,657,213 + BT1332 0.18 -3.3 1,657,250 - BT1332 0.24 -0.4 1,657,315 + BT1332 0.33 -0.1 1,657,316 - BT1332 0.33 +1.2 1,657,335 + BT1332 0.36 -1.0 1,657,361 + BT1332 0.40 -0.4 1,657,361 + BT1332 0.40 -2.1 1,657,363 + BT1332 0.40 -1.3 1,657,596 + BT1332 0.75 -1.3 1,657,620 + BT1332 0.78 -1.2 1,657,672 + BT1332 0.86 +0.6 1,657,686 - BT1332 0.88 -2.2 1,657,738 - -1.5 1,657,760 - -0.1 1,657,763 + -2.2 1,657,873 + -1.4 1,657,908 + BT1333 0.13 -0.6 1,657,908 + BT1333 0.13 -0.5 1,657,937 - BT1333 0.16 -1.9 1,657,991 + BT1333 0.21 -1.0 1,658,003 + BT1333 0.23 +0.9 1,658,003 + BT1333 0.23 -0.4 1,658,017 + BT1333 0.24 -1.4 1,658,030 + BT1333 0.25 -0.5 1,658,054 - BT1333 0.28 -0.4 1,658,054 - BT1333 0.28 -0.1 1,658,068 + BT1333 0.29 -0.1 1,658,079 + BT1333 0.30 -0.5 1,658,133 + BT1333 0.36 -0.6 1,658,183 + BT1333 0.41 +0.1 1,658,190 + BT1333 0.42 -0.4 1,658,195 + BT1333 0.42 -2.3 1,658,197 + BT1333 0.42 -1.0 1,658,202 - BT1333 0.43 -1.8 1,658,202 - BT1333 0.43 -0.6 1,658,242 + BT1333 0.47 -2.1 1,658,243 - BT1333 0.47 -1.3 1,658,322 + BT1333 0.55 -1.1 1,658,322 + BT1333 0.55 -0.1 1,658,322 + BT1333 0.55 -1.8 1,658,322 + BT1333 0.55 -0.4 1,658,322 + BT1333 0.55 -3.3 1,658,323 - BT1333 0.55 +0.6 1,658,324 + BT1333 0.55 -1.6 1,658,325 - BT1333 0.55 +0.6 1,658,325 - BT1333 0.55 -1.9 1,658,533 - BT1333 0.77 -3.7 1,658,578 + BT1333 0.81 -2.1 1,658,578 + BT1333 0.81 -0.1 1,658,591 - BT1333 0.83 -0.6 1,658,704 + -0.9 1,658,710 + -2.7 1,658,711 - +0.9 1,658,722 + -3.2
Or see this region's nucleotide sequence