Experiment: Post-colonization (Day 7) - Cage1A;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0638 and BT0639 are separated by 12 nucleotides BT0639 and BT0640 are separated by 356 nucleotides BT0640 and BT0641 are separated by 111 nucleotides BT0641 and BT0642 are separated by 119 nucleotides
BT0638: BT0638 - putative methionine aminopeptidase A (NCBI ptt file), at 786,540 to 787,463
BT0638
BT0639: BT0639 - conserved hypothetical protein (NCBI ptt file), at 787,476 to 788,102
BT0639
BT0640: BT0640 - Fe-S oxidoreductases family 2 (NCBI ptt file), at 788,459 to 790,102
BT0640
BT0641: BT0641 - hypothetical protein (NCBI ptt file), at 790,214 to 790,615
BT0641
BT0642: BT0642 - RNA pseudouridylate synthase (NCBI ptt file), at 790,735 to 791,655
BT0642
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.549 kb on - strand, within BT0639 at 787.575 kb on - strand, within BT0639 at 787.670 kb on - strand, within BT0639 at 787.670 kb on - strand, within BT0639 at 787.671 kb on + strand, within BT0639 at 787.672 kb on - strand, within BT0639 at 787.672 kb on - strand, within BT0639 at 787.701 kb on - strand, within BT0639 at 787.866 kb on + strand, within BT0639 at 787.866 kb on + strand, within BT0639 at 787.867 kb on - strand, within BT0639 at 787.880 kb on + strand, within BT0639 at 787.927 kb on + strand, within BT0639 at 787.930 kb on - strand, within BT0639 at 788.079 kb on + strand at 788.079 kb on + strand at 788.091 kb on - strand at 788.092 kb on + strand at 788.105 kb on - strand at 788.180 kb on + strand at 788.217 kb on - strand at 788.224 kb on + strand at 788.225 kb on - strand at 788.271 kb on + strand at 788.272 kb on - strand at 788.272 kb on - strand at 788.291 kb on + strand at 788.301 kb on + strand at 788.348 kb on + strand at 788.378 kb on + strand at 788.386 kb on - strand at 788.427 kb on - strand at 788.433 kb on + strand at 788.460 kb on + strand at 788.460 kb on + strand at 788.493 kb on - strand at 788.590 kb on - strand at 788.666 kb on - strand, within BT0640 at 788.676 kb on - strand, within BT0640 at 788.687 kb on - strand, within BT0640 at 788.740 kb on + strand, within BT0640 at 788.792 kb on + strand, within BT0640 at 788.805 kb on - strand, within BT0640 at 788.843 kb on - strand, within BT0640 at 788.974 kb on - strand, within BT0640 at 789.023 kb on + strand, within BT0640 at 789.030 kb on - strand, within BT0640 at 789.122 kb on + strand, within BT0640 at 789.166 kb on - strand, within BT0640 at 789.203 kb on - strand, within BT0640 at 789.245 kb on - strand, within BT0640 at 789.452 kb on - strand, within BT0640 at 789.452 kb on - strand, within BT0640 at 789.680 kb on + strand, within BT0640 at 789.681 kb on - strand, within BT0640 at 789.711 kb on - strand, within BT0640 at 789.744 kb on - strand, within BT0640 at 789.808 kb on + strand, within BT0640 at 789.854 kb on + strand, within BT0640 at 789.906 kb on - strand, within BT0640 at 790.037 kb on + strand at 790.038 kb on - strand at 790.038 kb on - strand at 790.117 kb on - strand at 790.119 kb on + strand at 790.159 kb on - strand at 790.160 kb on + strand at 790.300 kb on - strand, within BT0641 at 790.311 kb on + strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.355 kb on - strand, within BT0641 at 790.404 kb on + strand, within BT0641 at 790.438 kb on - strand, within BT0641 at 790.521 kb on + strand, within BT0641 at 790.532 kb on + strand, within BT0641 at 790.578 kb on + strand at 790.578 kb on + strand at 790.609 kb on + strand at 790.693 kb on + strand at 790.694 kb on - strand at 790.736 kb on + strand at 790.737 kb on - strand at 790.759 kb on - strand at 790.792 kb on + strand at 790.792 kb on + strand at 790.793 kb on - strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.814 kb on + strand at 790.815 kb on - strand at 790.894 kb on + strand, within BT0642 at 790.900 kb on - strand, within BT0642 at 790.900 kb on - strand, within BT0642 at 790.910 kb on - strand, within BT0642 at 790.920 kb on + strand, within BT0642 at 790.924 kb on + strand, within BT0642 at 790.941 kb on + strand, within BT0642 at 790.973 kb on + strand, within BT0642 at 790.984 kb on - strand, within BT0642 at 791.050 kb on + strand, within BT0642 at 791.055 kb on - strand, within BT0642 at 791.093 kb on + strand, within BT0642
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 7) - Cage1A;Mouse1 remove 787,549 - BT0639 0.12 +1.2 787,575 - BT0639 0.16 -0.1 787,670 - BT0639 0.31 +0.6 787,670 - BT0639 0.31 -0.4 787,671 + BT0639 0.31 -1.0 787,672 - BT0639 0.31 +2.2 787,672 - BT0639 0.31 -0.6 787,701 - BT0639 0.36 +0.2 787,866 + BT0639 0.62 +1.0 787,866 + BT0639 0.62 +1.7 787,867 - BT0639 0.62 +0.8 787,880 + BT0639 0.64 -1.1 787,927 + BT0639 0.72 -1.0 787,930 - BT0639 0.72 -0.6 788,079 + -1.8 788,079 + -0.1 788,091 - -0.7 788,092 + -2.7 788,105 - +0.8 788,180 + +0.6 788,217 - -0.4 788,224 + -1.0 788,225 - -2.8 788,271 + -1.3 788,272 - -0.4 788,272 - -1.1 788,291 + -0.9 788,301 + -1.9 788,348 + -1.7 788,378 + -0.1 788,386 - +0.8 788,427 - -2.0 788,433 + -1.0 788,460 + +0.8 788,460 + -0.4 788,493 - -1.1 788,590 - -2.4 788,666 - BT0640 0.13 +0.9 788,676 - BT0640 0.13 +1.2 788,687 - BT0640 0.14 -2.1 788,740 + BT0640 0.17 -0.5 788,792 + BT0640 0.20 +0.6 788,805 - BT0640 0.21 -0.1 788,843 - BT0640 0.23 -1.5 788,974 - BT0640 0.31 -0.4 789,023 + BT0640 0.34 -0.2 789,030 - BT0640 0.35 -1.7 789,122 + BT0640 0.40 -0.6 789,166 - BT0640 0.43 -0.9 789,203 - BT0640 0.45 -0.1 789,245 - BT0640 0.48 -1.9 789,452 - BT0640 0.60 +1.2 789,452 - BT0640 0.60 +0.8 789,680 + BT0640 0.74 -1.1 789,681 - BT0640 0.74 +1.2 789,711 - BT0640 0.76 +2.2 789,744 - BT0640 0.78 -2.6 789,808 + BT0640 0.82 -2.0 789,854 + BT0640 0.85 +0.8 789,906 - BT0640 0.88 +1.0 790,037 + +0.8 790,038 - -2.8 790,038 - +0.6 790,117 - -0.4 790,119 + -0.8 790,159 - -1.1 790,160 + -1.8 790,300 - BT0641 0.21 -1.1 790,311 + BT0641 0.24 -1.0 790,355 - BT0641 0.35 -1.4 790,355 - BT0641 0.35 -0.4 790,355 - BT0641 0.35 +2.1 790,404 + BT0641 0.47 -1.3 790,438 - BT0641 0.56 -0.1 790,521 + BT0641 0.76 -1.1 790,532 + BT0641 0.79 +0.6 790,578 + +1.5 790,578 + -0.8 790,609 + -2.3 790,693 + +0.5 790,694 - +0.0 790,736 + +0.6 790,737 - -0.7 790,759 - -0.8 790,792 + -1.3 790,792 + +0.3 790,793 - -1.7 790,814 + -0.9 790,814 + -2.1 790,814 + +0.6 790,814 + -1.3 790,815 - -1.6 790,894 + BT0642 0.17 -0.9 790,900 - BT0642 0.18 +0.3 790,900 - BT0642 0.18 -1.9 790,910 - BT0642 0.19 -0.6 790,920 + BT0642 0.20 +0.2 790,924 + BT0642 0.21 -0.4 790,941 + BT0642 0.22 -1.7 790,973 + BT0642 0.26 -1.0 790,984 - BT0642 0.27 -0.7 791,050 + BT0642 0.34 -0.2 791,055 - BT0642 0.35 -0.8 791,093 + BT0642 0.39 -0.8
Or see this region's nucleotide sequence