Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21495

Experiment: L-Glutamine (C)(N); with TAPS; with chloride

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS21490 and PFLU_RS21495 overlap by 1 nucleotidesPFLU_RS21495 and PFLU_RS21500 overlap by 25 nucleotidesPFLU_RS21500 and PFLU_RS21505 are separated by 59 nucleotides PFLU_RS21490: PFLU_RS21490 - protein-disulfide reductase DsbD, at 4,831,747 to 4,833,474 _RS21490 PFLU_RS21495: PFLU_RS21495 - TlpA family protein disulfide reductase, at 4,833,474 to 4,834,325 _RS21495 PFLU_RS21500: PFLU_RS21500 - thiol:disulfide interchange protein DsbG, at 4,834,301 to 4,835,062 _RS21500 PFLU_RS21505: PFLU_RS21505 - hypothetical protein, at 4,835,122 to 4,837,857 _RS21505 Position (kb) 4833 4834 4835Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4833.660 kb on + strand, within PFLU_RS21495at 4833.661 kb on - strand, within PFLU_RS21495at 4833.661 kb on - strand, within PFLU_RS21495at 4833.673 kb on - strand, within PFLU_RS21495at 4833.673 kb on - strand, within PFLU_RS21495at 4833.765 kb on + strand, within PFLU_RS21495at 4833.861 kb on + strand, within PFLU_RS21495at 4833.861 kb on + strand, within PFLU_RS21495at 4833.862 kb on - strand, within PFLU_RS21495at 4833.862 kb on - strand, within PFLU_RS21495at 4833.933 kb on + strand, within PFLU_RS21495at 4833.933 kb on + strand, within PFLU_RS21495at 4833.934 kb on - strand, within PFLU_RS21495at 4833.934 kb on - strand, within PFLU_RS21495at 4833.934 kb on - strand, within PFLU_RS21495at 4834.188 kb on + strand, within PFLU_RS21495at 4834.188 kb on + strand, within PFLU_RS21495at 4834.490 kb on + strand, within PFLU_RS21500at 4834.491 kb on - strand, within PFLU_RS21500at 4834.491 kb on - strand, within PFLU_RS21500at 4834.491 kb on - strand, within PFLU_RS21500at 4834.491 kb on - strand, within PFLU_RS21500at 4834.491 kb on - strand, within PFLU_RS21500at 4834.533 kb on - strand, within PFLU_RS21500at 4834.533 kb on - strand, within PFLU_RS21500at 4834.583 kb on + strand, within PFLU_RS21500at 4834.583 kb on + strand, within PFLU_RS21500at 4834.583 kb on + strand, within PFLU_RS21500at 4834.583 kb on + strand, within PFLU_RS21500at 4834.583 kb on + strand, within PFLU_RS21500at 4834.583 kb on + strand, within PFLU_RS21500at 4834.583 kb on + strand, within PFLU_RS21500at 4834.584 kb on - strand, within PFLU_RS21500at 4834.584 kb on - strand, within PFLU_RS21500at 4834.584 kb on - strand, within PFLU_RS21500at 4834.584 kb on - strand, within PFLU_RS21500at 4834.584 kb on - strand, within PFLU_RS21500at 4834.584 kb on - strand, within PFLU_RS21500at 4834.584 kb on - strand, within PFLU_RS21500at 4834.652 kb on - strand, within PFLU_RS21500at 4834.652 kb on - strand, within PFLU_RS21500at 4834.670 kb on + strand, within PFLU_RS21500at 4834.670 kb on + strand, within PFLU_RS21500at 4834.670 kb on + strand, within PFLU_RS21500at 4834.670 kb on + strand, within PFLU_RS21500at 4834.670 kb on + strand, within PFLU_RS21500at 4834.670 kb on + strand, within PFLU_RS21500at 4834.671 kb on - strand, within PFLU_RS21500at 4834.671 kb on - strand, within PFLU_RS21500at 4834.697 kb on + strand, within PFLU_RS21500at 4834.698 kb on - strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.705 kb on + strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.706 kb on - strand, within PFLU_RS21500at 4834.930 kb on + strand, within PFLU_RS21500at 4834.930 kb on + strand, within PFLU_RS21500at 4834.931 kb on - strand, within PFLU_RS21500at 4834.931 kb on - strand, within PFLU_RS21500at 4834.931 kb on - strand, within PFLU_RS21500at 4834.931 kb on - strand, within PFLU_RS21500at 4834.980 kb on - strand, within PFLU_RS21500at 4834.980 kb on - strand, within PFLU_RS21500at 4834.980 kb on - strand, within PFLU_RS21500at 4835.060 kb on + strandat 4835.060 kb on + strandat 4835.060 kb on + strandat 4835.060 kb on + strandat 4835.060 kb on + strandat 4835.061 kb on - strandat 4835.061 kb on - strandat 4835.061 kb on - strandat 4835.061 kb on - strandat 4835.061 kb on - strandat 4835.061 kb on - strandat 4835.061 kb on - strandat 4835.099 kb on - strandat 4835.123 kb on + strandat 4835.124 kb on - strandat 4835.124 kb on - strandat 4835.137 kb on + strandat 4835.137 kb on + strandat 4835.137 kb on + strandat 4835.137 kb on + strandat 4835.138 kb on - strandat 4835.138 kb on - strandat 4835.138 kb on - strandat 4835.138 kb on - strandat 4835.193 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)(N); with TAPS; with chloride
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4,833,660 + PFLU_RS21495 0.22 -0.5
4,833,661 - PFLU_RS21495 0.22 -0.5
4,833,661 - PFLU_RS21495 0.22 +0.5
4,833,673 - PFLU_RS21495 0.23 +0.5
4,833,673 - PFLU_RS21495 0.23 -0.5
4,833,765 + PFLU_RS21495 0.34 -2.0
4,833,861 + PFLU_RS21495 0.45 -0.5
4,833,861 + PFLU_RS21495 0.45 -0.9
4,833,862 - PFLU_RS21495 0.46 +0.5
4,833,862 - PFLU_RS21495 0.46 +1.5
4,833,933 + PFLU_RS21495 0.54 -0.5
4,833,933 + PFLU_RS21495 0.54 -1.5
4,833,934 - PFLU_RS21495 0.54 -0.5
4,833,934 - PFLU_RS21495 0.54 -0.9
4,833,934 - PFLU_RS21495 0.54 +1.5
4,834,188 + PFLU_RS21495 0.84 -0.5
4,834,188 + PFLU_RS21495 0.84 +1.1
4,834,490 + PFLU_RS21500 0.25 +0.3
4,834,491 - PFLU_RS21500 0.25 +0.2
4,834,491 - PFLU_RS21500 0.25 -1.7
4,834,491 - PFLU_RS21500 0.25 -0.6
4,834,491 - PFLU_RS21500 0.25 -2.8
4,834,491 - PFLU_RS21500 0.25 -1.2
4,834,533 - PFLU_RS21500 0.30 -0.9
4,834,533 - PFLU_RS21500 0.30 -1.0
4,834,583 + PFLU_RS21500 0.37 +0.0
4,834,583 + PFLU_RS21500 0.37 -0.8
4,834,583 + PFLU_RS21500 0.37 -0.3
4,834,583 + PFLU_RS21500 0.37 +1.1
4,834,583 + PFLU_RS21500 0.37 +0.2
4,834,583 + PFLU_RS21500 0.37 +0.6
4,834,583 + PFLU_RS21500 0.37 +1.0
4,834,584 - PFLU_RS21500 0.37 -0.5
4,834,584 - PFLU_RS21500 0.37 +0.8
4,834,584 - PFLU_RS21500 0.37 +0.2
4,834,584 - PFLU_RS21500 0.37 -0.1
4,834,584 - PFLU_RS21500 0.37 -1.4
4,834,584 - PFLU_RS21500 0.37 -0.1
4,834,584 - PFLU_RS21500 0.37 -0.9
4,834,652 - PFLU_RS21500 0.46 -0.1
4,834,652 - PFLU_RS21500 0.46 -0.2
4,834,670 + PFLU_RS21500 0.48 +0.9
4,834,670 + PFLU_RS21500 0.48 +0.5
4,834,670 + PFLU_RS21500 0.48 -0.4
4,834,670 + PFLU_RS21500 0.48 +0.7
4,834,670 + PFLU_RS21500 0.48 +0.4
4,834,670 + PFLU_RS21500 0.48 -0.2
4,834,671 - PFLU_RS21500 0.49 -0.3
4,834,671 - PFLU_RS21500 0.49 -0.8
4,834,697 + PFLU_RS21500 0.52 -1.0
4,834,698 - PFLU_RS21500 0.52 +0.7
4,834,705 + PFLU_RS21500 0.53 +0.1
4,834,705 + PFLU_RS21500 0.53 +1.1
4,834,705 + PFLU_RS21500 0.53 -1.4
4,834,705 + PFLU_RS21500 0.53 +0.5
4,834,705 + PFLU_RS21500 0.53 -0.9
4,834,705 + PFLU_RS21500 0.53 +1.5
4,834,705 + PFLU_RS21500 0.53 +0.0
4,834,705 + PFLU_RS21500 0.53 -0.1
4,834,705 + PFLU_RS21500 0.53 +0.9
4,834,705 + PFLU_RS21500 0.53 -0.9
4,834,705 + PFLU_RS21500 0.53 +2.2
4,834,705 + PFLU_RS21500 0.53 -0.0
4,834,706 - PFLU_RS21500 0.53 +0.5
4,834,706 - PFLU_RS21500 0.53 +0.3
4,834,706 - PFLU_RS21500 0.53 -0.4
4,834,706 - PFLU_RS21500 0.53 -0.7
4,834,706 - PFLU_RS21500 0.53 +0.1
4,834,706 - PFLU_RS21500 0.53 -0.5
4,834,706 - PFLU_RS21500 0.53 -0.3
4,834,706 - PFLU_RS21500 0.53 -1.9
4,834,706 - PFLU_RS21500 0.53 -0.1
4,834,706 - PFLU_RS21500 0.53 +0.1
4,834,706 - PFLU_RS21500 0.53 -0.2
4,834,706 - PFLU_RS21500 0.53 -0.6
4,834,930 + PFLU_RS21500 0.83 +1.1
4,834,930 + PFLU_RS21500 0.83 -0.6
4,834,931 - PFLU_RS21500 0.83 +0.0
4,834,931 - PFLU_RS21500 0.83 -0.8
4,834,931 - PFLU_RS21500 0.83 -0.3
4,834,931 - PFLU_RS21500 0.83 -0.4
4,834,980 - PFLU_RS21500 0.89 +0.7
4,834,980 - PFLU_RS21500 0.89 -0.6
4,834,980 - PFLU_RS21500 0.89 +1.0
4,835,060 + -1.3
4,835,060 + +0.3
4,835,060 + -0.3
4,835,060 + -0.1
4,835,060 + -0.2
4,835,061 - +0.5
4,835,061 - -0.6
4,835,061 - -1.5
4,835,061 - -0.1
4,835,061 - +0.2
4,835,061 - +0.9
4,835,061 - -1.1
4,835,099 - -0.1
4,835,123 + -1.9
4,835,124 - -0.9
4,835,124 - -0.7
4,835,137 + +0.3
4,835,137 + +0.1
4,835,137 + -0.7
4,835,137 + -0.8
4,835,138 - +0.3
4,835,138 - -1.6
4,835,138 - -2.0
4,835,138 - -0.4
4,835,193 + +0.2

Or see this region's nucleotide sequence