Experiment: Post-colonization (Day 4) - Cage1A;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0296 and BT0297 are separated by 20 nucleotides BT0297 and BT0298 are separated by 7 nucleotides
BT0296: BT0296 - putative xanthan lyase XalB precursor (NCBI ptt file), at 345,748 to 349,053
BT0296
BT0297: BT0297 - putative outer membrane lipoprotein silC precursor (NCBI ptt file), at 349,074 to 350,570
BT0297
BT0298: BT0298 - cation efflux system protein (outer membrane protein) (NCBI ptt file), at 350,578 to 351,639
BT0298
Position (kb) 349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2 at 348.119 kb on - strand, within BT0296 at 348.247 kb on - strand, within BT0296 at 348.355 kb on - strand, within BT0296 at 348.355 kb on - strand, within BT0296 at 348.503 kb on - strand, within BT0296 at 348.544 kb on - strand, within BT0296 at 348.610 kb on - strand, within BT0296 at 348.634 kb on - strand, within BT0296 at 348.691 kb on - strand, within BT0296 at 348.721 kb on - strand, within BT0296 at 348.734 kb on - strand at 348.913 kb on - strand at 348.958 kb on + strand at 349.005 kb on + strand at 349.072 kb on - strand at 349.072 kb on - strand at 349.093 kb on + strand at 349.096 kb on + strand at 349.277 kb on - strand, within BT0297 at 349.315 kb on - strand, within BT0297 at 349.357 kb on - strand, within BT0297 at 349.425 kb on - strand, within BT0297 at 349.475 kb on - strand, within BT0297 at 349.518 kb on + strand, within BT0297 at 349.539 kb on - strand, within BT0297 at 349.579 kb on + strand, within BT0297 at 349.604 kb on + strand, within BT0297 at 349.682 kb on + strand, within BT0297 at 349.729 kb on - strand, within BT0297 at 350.002 kb on + strand, within BT0297 at 350.359 kb on - strand, within BT0297 at 350.480 kb on - strand at 350.485 kb on + strand at 350.668 kb on - strand at 350.730 kb on + strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.756 kb on - strand, within BT0298 at 350.864 kb on + strand, within BT0298 at 351.007 kb on - strand, within BT0298 at 351.172 kb on + strand, within BT0298 at 351.185 kb on - strand, within BT0298 at 351.247 kb on - strand, within BT0298 at 351.507 kb on - strand, within BT0298 at 351.539 kb on - strand at 351.539 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 4) - Cage1A;Mouse1 remove 348,119 - BT0296 0.72 -1.0 348,247 - BT0296 0.76 -0.3 348,355 - BT0296 0.79 +0.1 348,355 - BT0296 0.79 +2.0 348,503 - BT0296 0.83 -1.4 348,544 - BT0296 0.85 -1.2 348,610 - BT0296 0.87 -0.4 348,634 - BT0296 0.87 -1.5 348,691 - BT0296 0.89 -0.7 348,721 - BT0296 0.90 -1.4 348,734 - -2.5 348,913 - -0.8 348,958 + +1.8 349,005 + -0.3 349,072 - -1.0 349,072 - -1.0 349,093 + +0.1 349,096 + -2.0 349,277 - BT0297 0.14 -1.2 349,315 - BT0297 0.16 +0.2 349,357 - BT0297 0.19 -1.2 349,425 - BT0297 0.23 -0.5 349,475 - BT0297 0.27 -2.7 349,518 + BT0297 0.30 -0.2 349,539 - BT0297 0.31 +0.2 349,579 + BT0297 0.34 -1.4 349,604 + BT0297 0.35 -0.9 349,682 + BT0297 0.41 +0.1 349,729 - BT0297 0.44 -1.3 350,002 + BT0297 0.62 -1.4 350,359 - BT0297 0.86 -1.2 350,480 - -0.1 350,485 + -0.9 350,668 - -1.4 350,730 + BT0298 0.14 -1.1 350,756 - BT0298 0.17 -0.4 350,756 - BT0298 0.17 -0.8 350,864 + BT0298 0.27 -0.1 351,007 - BT0298 0.40 -1.3 351,172 + BT0298 0.56 -1.2 351,185 - BT0298 0.57 -1.7 351,247 - BT0298 0.63 -1.4 351,507 - BT0298 0.87 -2.2 351,539 - +0.2 351,539 - +0.4
Or see this region's nucleotide sequence