Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0058

Experiment: Nalidixic 0.00390625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0056 and Psest_0057 are separated by 140 nucleotidesPsest_0057 and Psest_0058 are separated by 5 nucleotidesPsest_0058 and Psest_0059 are separated by 389 nucleotidesPsest_0059 and Psest_0060 are separated by 2 nucleotides Psest_0056: Psest_0056 - Glutathione S-transferase, at 57,791 to 58,633 _0056 Psest_0057: Psest_0057 - Predicted transcriptional regulators, at 58,774 to 59,067 _0057 Psest_0058: Psest_0058 - HipA-like C-terminal domain./HipA-like N-terminal domain., at 59,073 to 60,392 _0058 Psest_0059: Psest_0059 - hypothetical protein, at 60,782 to 61,153 _0059 Psest_0060: Psest_0060 - Predicted Fe-S protein, at 61,156 to 61,338 _0060 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 58.116 kb on + strand, within Psest_0056at 58.117 kb on - strand, within Psest_0056at 58.117 kb on - strandat 58.117 kb on - strand, within Psest_0056at 58.117 kb on - strand, within Psest_0056at 58.117 kb on - strand, within Psest_0056at 58.117 kb on - strand, within Psest_0056at 58.131 kb on + strand, within Psest_0056at 58.137 kb on + strand, within Psest_0056at 58.137 kb on + strand, within Psest_0056at 58.137 kb on + strand, within Psest_0056at 58.137 kb on + strand, within Psest_0056at 58.137 kb on + strand, within Psest_0056at 58.137 kb on + strand, within Psest_0056at 58.138 kb on - strand, within Psest_0056at 58.138 kb on - strand, within Psest_0056at 58.138 kb on - strand, within Psest_0056at 58.260 kb on + strand, within Psest_0056at 58.261 kb on - strand, within Psest_0056at 58.410 kb on + strand, within Psest_0056at 58.411 kb on - strand, within Psest_0056at 58.491 kb on + strand, within Psest_0056at 58.491 kb on + strand, within Psest_0056at 58.491 kb on + strand, within Psest_0056at 58.491 kb on + strand, within Psest_0056at 58.617 kb on + strandat 58.675 kb on + strandat 58.675 kb on + strandat 58.675 kb on + strandat 58.676 kb on - strandat 58.834 kb on + strand, within Psest_0057at 58.843 kb on + strand, within Psest_0057at 58.843 kb on + strand, within Psest_0057at 58.843 kb on + strand, within Psest_0057at 58.844 kb on - strand, within Psest_0057at 58.844 kb on - strand, within Psest_0057at 58.844 kb on - strand, within Psest_0057at 59.031 kb on + strand, within Psest_0057at 59.031 kb on + strand, within Psest_0057at 59.216 kb on - strand, within Psest_0058at 59.216 kb on - strand, within Psest_0058at 59.216 kb on - strand, within Psest_0058at 59.351 kb on - strand, within Psest_0058at 59.351 kb on - strand, within Psest_0058at 59.351 kb on - strand, within Psest_0058at 59.351 kb on - strand, within Psest_0058at 59.351 kb on - strand, within Psest_0058at 59.351 kb on - strand, within Psest_0058at 59.351 kb on - strand, within Psest_0058at 59.456 kb on - strand, within Psest_0058at 59.456 kb on - strand, within Psest_0058at 59.456 kb on - strand, within Psest_0058at 59.456 kb on - strand, within Psest_0058at 59.464 kb on - strand, within Psest_0058at 59.725 kb on + strand, within Psest_0058at 59.726 kb on - strand, within Psest_0058at 59.726 kb on - strand, within Psest_0058at 59.728 kb on + strand, within Psest_0058at 59.729 kb on - strand, within Psest_0058at 59.729 kb on - strand, within Psest_0058at 59.729 kb on - strand, within Psest_0058at 59.729 kb on - strand, within Psest_0058at 59.930 kb on - strand, within Psest_0058at 59.930 kb on - strand, within Psest_0058at 59.930 kb on - strand, within Psest_0058at 59.930 kb on - strand, within Psest_0058at 59.935 kb on + strand, within Psest_0058at 59.936 kb on - strand, within Psest_0058at 60.039 kb on + strand, within Psest_0058at 60.039 kb on + strand, within Psest_0058at 60.039 kb on + strand, within Psest_0058at 60.039 kb on + strand, within Psest_0058at 60.039 kb on + strand, within Psest_0058at 60.039 kb on + strand, within Psest_0058at 60.039 kb on + strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.040 kb on - strand, within Psest_0058at 60.041 kb on + strand, within Psest_0058at 60.041 kb on + strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.042 kb on - strand, within Psest_0058at 60.158 kb on - strand, within Psest_0058at 60.185 kb on - strand, within Psest_0058at 60.185 kb on - strand, within Psest_0058at 60.191 kb on + strand, within Psest_0058at 60.268 kb on + strandat 60.268 kb on + strandat 60.269 kb on - strandat 60.269 kb on - strandat 60.269 kb on - strandat 60.385 kb on + strandat 60.541 kb on + strandat 60.541 kb on + strandat 60.542 kb on - strandat 60.545 kb on + strandat 60.576 kb on + strandat 60.577 kb on - strandat 60.666 kb on + strandat 60.666 kb on + strandat 60.667 kb on - strandat 60.667 kb on - strandat 60.726 kb on - strandat 60.905 kb on + strand, within Psest_0059at 61.215 kb on + strand, within Psest_0060at 61.216 kb on - strand, within Psest_0060at 61.290 kb on - strand, within Psest_0060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
remove
58,116 + Psest_0056 0.39 -0.1
58,117 - Psest_0056 0.39 -0.0
58,117 - +0.7
58,117 - Psest_0056 0.39 -0.6
58,117 - Psest_0056 0.39 -0.6
58,117 - Psest_0056 0.39 -0.1
58,117 - Psest_0056 0.39 +0.4
58,131 + Psest_0056 0.40 -1.5
58,137 + Psest_0056 0.41 -0.5
58,137 + Psest_0056 0.41 -2.5
58,137 + Psest_0056 0.41 -0.7
58,137 + Psest_0056 0.41 +0.8
58,137 + Psest_0056 0.41 -1.6
58,137 + Psest_0056 0.41 -1.5
58,138 - Psest_0056 0.41 -0.3
58,138 - Psest_0056 0.41 -1.6
58,138 - Psest_0056 0.41 -0.8
58,260 + Psest_0056 0.56 -0.2
58,261 - Psest_0056 0.56 +0.6
58,410 + Psest_0056 0.73 +2.1
58,411 - Psest_0056 0.74 -0.3
58,491 + Psest_0056 0.83 -1.3
58,491 + Psest_0056 0.83 -3.2
58,491 + Psest_0056 0.83 -2.1
58,491 + Psest_0056 0.83 +1.7
58,617 + +0.9
58,675 + -0.4
58,675 + -0.3
58,675 + +0.3
58,676 - -2.0
58,834 + Psest_0057 0.20 +0.1
58,843 + Psest_0057 0.23 +3.6
58,843 + Psest_0057 0.23 +1.7
58,843 + Psest_0057 0.23 -0.6
58,844 - Psest_0057 0.24 -1.2
58,844 - Psest_0057 0.24 -1.9
58,844 - Psest_0057 0.24 -2.5
59,031 + Psest_0057 0.87 -1.4
59,031 + Psest_0057 0.87 -0.1
59,216 - Psest_0058 0.11 -2.9
59,216 - Psest_0058 0.11 +1.0
59,216 - Psest_0058 0.11 -1.9
59,351 - Psest_0058 0.21 -1.1
59,351 - Psest_0058 0.21 -1.2
59,351 - Psest_0058 0.21 -1.9
59,351 - Psest_0058 0.21 +0.8
59,351 - Psest_0058 0.21 +0.0
59,351 - Psest_0058 0.21 -1.1
59,351 - Psest_0058 0.21 -0.3
59,456 - Psest_0058 0.29 -2.7
59,456 - Psest_0058 0.29 +0.2
59,456 - Psest_0058 0.29 -1.5
59,456 - Psest_0058 0.29 +1.5
59,464 - Psest_0058 0.30 -1.0
59,725 + Psest_0058 0.49 -0.5
59,726 - Psest_0058 0.49 -1.0
59,726 - Psest_0058 0.49 -0.7
59,728 + Psest_0058 0.50 -0.8
59,729 - Psest_0058 0.50 +1.2
59,729 - Psest_0058 0.50 -1.9
59,729 - Psest_0058 0.50 -0.3
59,729 - Psest_0058 0.50 -0.8
59,930 - Psest_0058 0.65 -2.8
59,930 - Psest_0058 0.65 -0.9
59,930 - Psest_0058 0.65 -0.8
59,930 - Psest_0058 0.65 +0.7
59,935 + Psest_0058 0.65 -0.3
59,936 - Psest_0058 0.65 -0.7
60,039 + Psest_0058 0.73 -0.5
60,039 + Psest_0058 0.73 -2.3
60,039 + Psest_0058 0.73 -0.8
60,039 + Psest_0058 0.73 +0.5
60,039 + Psest_0058 0.73 -1.9
60,039 + Psest_0058 0.73 +1.5
60,039 + Psest_0058 0.73 +0.6
60,040 - Psest_0058 0.73 +1.9
60,040 - Psest_0058 0.73 -2.3
60,040 - Psest_0058 0.73 -0.0
60,040 - Psest_0058 0.73 +0.3
60,040 - Psest_0058 0.73 -2.4
60,040 - Psest_0058 0.73 -0.0
60,040 - Psest_0058 0.73 -0.4
60,040 - Psest_0058 0.73 -0.6
60,040 - Psest_0058 0.73 +0.6
60,040 - Psest_0058 0.73 +0.9
60,040 - Psest_0058 0.73 -3.1
60,040 - Psest_0058 0.73 +0.9
60,040 - Psest_0058 0.73 +0.3
60,040 - Psest_0058 0.73 -0.5
60,040 - Psest_0058 0.73 +0.1
60,040 - Psest_0058 0.73 +1.4
60,040 - Psest_0058 0.73 -0.2
60,040 - Psest_0058 0.73 -0.8
60,040 - Psest_0058 0.73 -1.7
60,040 - Psest_0058 0.73 -1.3
60,040 - Psest_0058 0.73 -1.4
60,040 - Psest_0058 0.73 -2.0
60,041 + Psest_0058 0.73 +0.1
60,041 + Psest_0058 0.73 -2.0
60,042 - Psest_0058 0.73 -1.2
60,042 - Psest_0058 0.73 -0.2
60,042 - Psest_0058 0.73 +0.5
60,042 - Psest_0058 0.73 -0.6
60,042 - Psest_0058 0.73 -1.9
60,042 - Psest_0058 0.73 -0.6
60,042 - Psest_0058 0.73 +1.0
60,042 - Psest_0058 0.73 -1.8
60,042 - Psest_0058 0.73 +0.3
60,042 - Psest_0058 0.73 -0.8
60,042 - Psest_0058 0.73 -2.1
60,042 - Psest_0058 0.73 -0.3
60,042 - Psest_0058 0.73 -0.9
60,042 - Psest_0058 0.73 -1.0
60,042 - Psest_0058 0.73 -1.7
60,158 - Psest_0058 0.82 -1.6
60,185 - Psest_0058 0.84 -0.1
60,185 - Psest_0058 0.84 -0.2
60,191 + Psest_0058 0.85 -0.7
60,268 + -0.4
60,268 + -0.2
60,269 - -1.2
60,269 - -0.2
60,269 - -1.5
60,385 + -0.7
60,541 + +0.7
60,541 + +1.3
60,542 - +0.1
60,545 + -0.2
60,576 + -0.6
60,577 - -2.0
60,666 + -0.4
60,666 + +0.8
60,667 - -0.2
60,667 - -1.3
60,726 - -2.4
60,905 + Psest_0059 0.33 +3.1
61,215 + Psest_0060 0.32 +0.0
61,216 - Psest_0060 0.33 +0.6
61,290 - Psest_0060 0.73 -0.4

Or see this region's nucleotide sequence