Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3922

Experiment: Nalidixic 0.00390625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.00390625 mg/ml
4,089,111	+				+0.3
4,089,112	-				-2.2
4,089,225	+				-1.7
4,089,225	+				-1.3
4,089,360	+				+0.1
4,089,361	-				-1.0
4,089,361	-				+1.1
4,089,370	+				+0.7
4,089,370	+				-2.1
4,089,370	+				-0.1
4,089,370	+				-0.1
4,089,370	+				-2.8
4,089,370	+				+0.1
4,089,370	+				+0.4
4,089,370	+				-2.8
4,089,370	+				-0.3
4,089,370	+				-0.5
4,089,370	+				+0.1
4,089,370	+				+1.4
4,089,370	+				+0.4
4,089,370	+				+0.1
4,089,371	-				+0.2
4,089,371	-				-0.5
4,089,371	-				+0.2
4,089,371	-				+0.9
4,089,371	-				-1.4
4,089,371	-				-0.6
4,089,371	-				-1.6
4,089,371	-				-0.7
4,089,371	-				-0.4
4,089,371	-				+1.1
4,089,371	-				-1.6
4,089,371	-				-0.1
4,089,371	-				-1.1
4,089,371	-				+0.6
4,089,371	-				-0.1
4,089,371	-				-1.1
4,089,371	-				-0.9
4,089,371	-				-1.1
4,089,371	-				-0.6
4,089,372	+				+0.4
4,089,372	+				-1.6
4,089,372	+				-0.0
4,089,372	+				-0.6
4,089,372	+				-3.2
4,089,372	+				-3.0
4,089,373	-				-0.9
4,089,373	-				-0.1
4,089,373	-				+0.7
4,089,373	-				-1.6
4,089,373	-				-2.0
4,089,415	+				-1.7
4,089,415	+				+0.4
4,089,415	+				-0.0
4,089,415	+				-1.0
4,089,415	+				+1.1
4,089,416	-				-2.4
4,089,416	-				+0.7
4,089,416	-				-1.8
4,089,416	-				-1.0
4,089,416	-				+0.5
4,089,416	-				+0.3
4,089,416	-				+0.1
4,089,416	-				-1.1
4,089,416	-				-1.1
4,089,417	+				-1.3
4,089,417	+				-1.3
4,089,429	+				+0.4
4,089,430	-				-0.1
4,089,430	-				-2.3
4,089,861	+		Psest_3921	0.89	-0.1
4,089,862	-		Psest_3921	0.89	+0.1
4,089,862	-		Psest_3921	0.89	-0.3
4,089,910	-				-1.0
4,089,966	-				-0.8
4,090,104	-		Psest_3922	0.14	-1.6
4,090,123	+		Psest_3922	0.17	+1.3
4,090,124	-		Psest_3922	0.17	-0.8
4,090,124	-		Psest_3922	0.17	-1.2
4,090,124	-		Psest_3922	0.17	-1.3
4,090,415	-		Psest_3922	0.57	-1.5
4,090,549	+		Psest_3922	0.76	-1.5
4,090,550	-		Psest_3922	0.76	-2.7
4,090,550	-		Psest_3922	0.76	-0.9
4,090,657	+				+0.7
4,090,657	+				-0.4
4,090,658	-				-1.1
4,090,968	+		Psest_3923	0.15	-0.8
4,090,969	-		Psest_3923	0.15	+0.8
4,091,238	+		Psest_3923	0.32	+0.4
4,091,538	+		Psest_3923	0.51	-1.4
4,091,709	+		Psest_3923	0.62	-0.9
4,091,710	-		Psest_3923	0.62	-1.0
4,091,710	-		Psest_3923	0.62	+0.3
4,091,710	-		Psest_3923	0.62	+0.0