Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0364

Experiment: Nalidixic 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0363 and Psest_0364 are separated by 78 nucleotidesPsest_0364 and Psest_0365 are separated by 41 nucleotides Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333 _0363 Psest_0364: Psest_0364 - Gluconolactonase, at 390,412 to 391,302 _0364 Psest_0365: Psest_0365 - NAD dependent epimerase/dehydratase family., at 391,344 to 392,159 _0365 Position (kb) 390 391 392Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 389.412 kb on - strandat 389.412 kb on - strandat 389.412 kb on - strandat 389.441 kb on + strandat 389.657 kb on + strand, within Psest_0363at 389.657 kb on + strand, within Psest_0363at 389.657 kb on + strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.658 kb on - strand, within Psest_0363at 389.879 kb on + strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 389.880 kb on - strand, within Psest_0363at 390.755 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.803 kb on + strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 390.804 kb on - strand, within Psest_0364at 391.217 kb on + strandat 391.323 kb on + strandat 391.324 kb on - strandat 391.324 kb on - strandat 391.384 kb on + strandat 391.384 kb on + strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.385 kb on - strandat 391.411 kb on + strandat 391.412 kb on - strandat 391.528 kb on + strand, within Psest_0365at 391.687 kb on + strand, within Psest_0365at 391.687 kb on + strand, within Psest_0365at 391.688 kb on - strand, within Psest_0365at 391.688 kb on - strand, within Psest_0365at 391.688 kb on - strand, within Psest_0365at 391.690 kb on + strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.691 kb on - strand, within Psest_0365at 391.732 kb on + strand, within Psest_0365at 391.735 kb on + strand, within Psest_0365at 391.736 kb on - strand, within Psest_0365at 391.736 kb on - strand, within Psest_0365at 391.855 kb on + strand, within Psest_0365at 391.856 kb on - strand, within Psest_0365at 391.856 kb on - strand, within Psest_0365at 391.856 kb on - strand, within Psest_0365at 391.859 kb on + strand, within Psest_0365at 391.859 kb on + strand, within Psest_0365at 391.860 kb on - strand, within Psest_0365at 392.065 kb on + strand, within Psest_0365at 392.154 kb on - strandat 392.215 kb on - strandat 392.272 kb on + strandat 392.272 kb on + strandat 392.272 kb on + strandat 392.272 kb on + strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.273 kb on - strandat 392.274 kb on + strandat 392.274 kb on + strandat 392.275 kb on - strandat 392.275 kb on - strandat 392.275 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
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389,412 - -1.9
389,412 - -1.6
389,412 - -1.3
389,441 + +0.3
389,657 + Psest_0363 0.30 +0.4
389,657 + Psest_0363 0.30 -1.1
389,657 + Psest_0363 0.30 -0.8
389,658 - Psest_0363 0.30 -0.3
389,658 - Psest_0363 0.30 +0.4
389,658 - Psest_0363 0.30 -0.3
389,658 - Psest_0363 0.30 +1.1
389,879 + Psest_0363 0.53 -1.5
389,880 - Psest_0363 0.53 +0.4
389,880 - Psest_0363 0.53 +1.2
389,880 - Psest_0363 0.53 -1.4
389,880 - Psest_0363 0.53 -0.5
389,880 - Psest_0363 0.53 -1.2
389,880 - Psest_0363 0.53 -1.6
390,755 + Psest_0364 0.38 -0.5
390,803 + Psest_0364 0.44 -1.6
390,803 + Psest_0364 0.44 -1.4
390,803 + Psest_0364 0.44 +0.6
390,803 + Psest_0364 0.44 -1.3
390,803 + Psest_0364 0.44 +0.3
390,803 + Psest_0364 0.44 -2.4
390,804 - Psest_0364 0.44 -1.4
390,804 - Psest_0364 0.44 -1.9
390,804 - Psest_0364 0.44 -1.2
390,804 - Psest_0364 0.44 -0.3
390,804 - Psest_0364 0.44 -1.2
390,804 - Psest_0364 0.44 -0.2
390,804 - Psest_0364 0.44 -1.6
390,804 - Psest_0364 0.44 -2.4
390,804 - Psest_0364 0.44 +0.1
390,804 - Psest_0364 0.44 +3.4
391,217 + -0.8
391,323 + +1.3
391,324 - -1.4
391,324 - +1.3
391,384 + -1.1
391,384 + +1.1
391,385 - -2.2
391,385 - -0.6
391,385 - +0.2
391,385 - +0.0
391,385 - -2.2
391,385 - -0.1
391,411 + -0.4
391,412 - -3.1
391,528 + Psest_0365 0.23 -0.6
391,687 + Psest_0365 0.42 -0.2
391,687 + Psest_0365 0.42 -0.8
391,688 - Psest_0365 0.42 -0.8
391,688 - Psest_0365 0.42 +0.7
391,688 - Psest_0365 0.42 -1.3
391,690 + Psest_0365 0.42 -2.3
391,691 - Psest_0365 0.43 -1.8
391,691 - Psest_0365 0.43 +1.3
391,691 - Psest_0365 0.43 -3.3
391,691 - Psest_0365 0.43 +0.8
391,691 - Psest_0365 0.43 +0.1
391,691 - Psest_0365 0.43 -1.6
391,691 - Psest_0365 0.43 -2.8
391,732 + Psest_0365 0.48 -0.5
391,735 + Psest_0365 0.48 -1.2
391,736 - Psest_0365 0.48 -2.2
391,736 - Psest_0365 0.48 +0.2
391,855 + Psest_0365 0.63 -3.0
391,856 - Psest_0365 0.63 -0.6
391,856 - Psest_0365 0.63 -0.8
391,856 - Psest_0365 0.63 -0.5
391,859 + Psest_0365 0.63 -0.9
391,859 + Psest_0365 0.63 +0.9
391,860 - Psest_0365 0.63 -0.5
392,065 + Psest_0365 0.88 -0.6
392,154 - -2.3
392,215 - -0.3
392,272 + +0.0
392,272 + -1.1
392,272 + -1.1
392,272 + +0.8
392,273 - -1.2
392,273 - +0.9
392,273 - -0.2
392,273 - -0.6
392,273 - -1.2
392,273 - -3.0
392,273 - -1.2
392,273 - -0.0
392,273 - +1.4
392,273 - -1.9
392,273 - +1.1
392,273 - -0.3
392,273 - -1.8
392,273 - -2.4
392,273 - +0.5
392,273 - -3.4
392,273 - -0.8
392,273 - -0.7
392,273 - +0.3
392,273 - -0.3
392,274 + +0.5
392,274 + +0.6
392,275 - -1.0
392,275 - -0.1
392,275 - -0.6

Or see this region's nucleotide sequence