Experiment: Nalidixic 0.00390625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0288 and Psest_0289 are separated by 133 nucleotides Psest_0289 and Psest_0290 are separated by 67 nucleotides
Psest_0288: Psest_0288 - putative DNA modification/repair radical SAM protein, at 303,412 to 304,623
_0288
Psest_0289: Psest_0289 - Predicted membrane protein, at 304,757 to 305,152
_0289
Psest_0290: Psest_0290 - dihydroorotase, multifunctional complex type, at 305,220 to 306,494
_0290
Position (kb) 304
305
306 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 303.777 kb on + strand, within Psest_0288 at 303.795 kb on - strand, within Psest_0288 at 303.875 kb on + strand, within Psest_0288 at 303.875 kb on + strand, within Psest_0288 at 303.875 kb on + strand, within Psest_0288 at 303.876 kb on - strand, within Psest_0288 at 303.876 kb on - strand, within Psest_0288 at 303.878 kb on + strand, within Psest_0288 at 303.878 kb on + strand, within Psest_0288 at 303.878 kb on + strand, within Psest_0288 at 303.879 kb on - strand, within Psest_0288 at 303.879 kb on - strand, within Psest_0288 at 303.896 kb on + strand, within Psest_0288 at 303.897 kb on - strand, within Psest_0288 at 304.205 kb on + strand, within Psest_0288 at 304.205 kb on + strand, within Psest_0288 at 304.205 kb on + strand, within Psest_0288 at 304.206 kb on - strand, within Psest_0288 at 304.206 kb on - strand, within Psest_0288 at 304.268 kb on + strand, within Psest_0288 at 304.269 kb on - strand, within Psest_0288 at 304.269 kb on - strand, within Psest_0288 at 304.410 kb on - strand, within Psest_0288 at 304.421 kb on + strand, within Psest_0288 at 304.422 kb on - strand, within Psest_0288 at 304.422 kb on - strand, within Psest_0288 at 304.577 kb on + strand at 304.577 kb on + strand at 304.577 kb on + strand at 304.577 kb on + strand at 304.578 kb on - strand at 304.639 kb on - strand at 304.639 kb on - strand at 304.639 kb on - strand at 304.639 kb on - strand at 304.651 kb on + strand at 304.651 kb on + strand at 304.652 kb on - strand at 304.652 kb on - strand at 304.657 kb on - strand at 304.657 kb on - strand at 304.774 kb on + strand at 304.774 kb on + strand at 304.775 kb on - strand at 304.791 kb on - strand at 304.832 kb on + strand, within Psest_0289 at 304.832 kb on + strand, within Psest_0289 at 304.832 kb on + strand, within Psest_0289 at 304.833 kb on - strand, within Psest_0289 at 304.835 kb on + strand, within Psest_0289 at 304.970 kb on + strand, within Psest_0289 at 304.971 kb on - strand, within Psest_0289 at 304.987 kb on - strand, within Psest_0289 at 305.017 kb on - strand, within Psest_0289 at 305.017 kb on - strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.027 kb on + strand, within Psest_0289 at 305.028 kb on - strand, within Psest_0289 at 305.028 kb on - strand, within Psest_0289 at 305.028 kb on - strand, within Psest_0289 at 305.057 kb on + strand, within Psest_0289 at 305.097 kb on - strand, within Psest_0289 at 305.188 kb on + strand at 305.188 kb on + strand at 305.189 kb on - strand at 305.189 kb on - strand at 305.659 kb on - strand, within Psest_0290 at 305.987 kb on - strand, within Psest_0290
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml remove 303,777 + Psest_0288 0.30 -0.6 303,795 - Psest_0288 0.32 -0.4 303,875 + Psest_0288 0.38 -0.5 303,875 + Psest_0288 0.38 +0.5 303,875 + Psest_0288 0.38 -0.4 303,876 - Psest_0288 0.38 -1.5 303,876 - Psest_0288 0.38 -2.5 303,878 + Psest_0288 0.38 -1.0 303,878 + Psest_0288 0.38 -1.7 303,878 + Psest_0288 0.38 -1.2 303,879 - Psest_0288 0.39 -2.4 303,879 - Psest_0288 0.39 -1.5 303,896 + Psest_0288 0.40 +0.9 303,897 - Psest_0288 0.40 +0.2 304,205 + Psest_0288 0.65 +0.4 304,205 + Psest_0288 0.65 -0.2 304,205 + Psest_0288 0.65 -0.0 304,206 - Psest_0288 0.66 -1.5 304,206 - Psest_0288 0.66 -1.2 304,268 + Psest_0288 0.71 +0.5 304,269 - Psest_0288 0.71 -1.9 304,269 - Psest_0288 0.71 -2.3 304,410 - Psest_0288 0.82 -0.7 304,421 + Psest_0288 0.83 +0.5 304,422 - Psest_0288 0.83 +0.8 304,422 - Psest_0288 0.83 -0.3 304,577 + +0.7 304,577 + -0.8 304,577 + -2.1 304,577 + +0.6 304,578 - -2.5 304,639 - -0.9 304,639 - +0.6 304,639 - -0.4 304,639 - +0.6 304,651 + -2.0 304,651 + -0.4 304,652 - -1.8 304,652 - -1.8 304,657 - +2.5 304,657 - +0.2 304,774 + -1.8 304,774 + -1.8 304,775 - -1.0 304,791 - +1.0 304,832 + Psest_0289 0.19 +0.3 304,832 + Psest_0289 0.19 +0.2 304,832 + Psest_0289 0.19 -1.0 304,833 - Psest_0289 0.19 -1.1 304,835 + Psest_0289 0.20 -0.7 304,970 + Psest_0289 0.54 -2.6 304,971 - Psest_0289 0.54 -1.0 304,987 - Psest_0289 0.58 -0.6 305,017 - Psest_0289 0.66 -2.2 305,017 - Psest_0289 0.66 +0.0 305,027 + Psest_0289 0.68 -3.1 305,027 + Psest_0289 0.68 -3.0 305,027 + Psest_0289 0.68 -1.0 305,027 + Psest_0289 0.68 -0.6 305,027 + Psest_0289 0.68 -0.4 305,027 + Psest_0289 0.68 +0.8 305,027 + Psest_0289 0.68 -2.1 305,027 + Psest_0289 0.68 -0.3 305,027 + Psest_0289 0.68 -1.4 305,027 + Psest_0289 0.68 -2.9 305,028 - Psest_0289 0.68 +0.6 305,028 - Psest_0289 0.68 +0.0 305,028 - Psest_0289 0.68 -1.3 305,057 + Psest_0289 0.76 -1.3 305,097 - Psest_0289 0.86 +0.5 305,188 + +0.0 305,188 + +0.0 305,189 - -1.4 305,189 - -0.8 305,659 - Psest_0290 0.34 +1.0 305,987 - Psest_0290 0.60 +1.3
Or see this region's nucleotide sequence