Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1570

Experiment: Nalidixic 0.00390625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1569 and Psest_1570 are separated by 13 nucleotidesPsest_1570 and Psest_1571 are separated by 7 nucleotides Psest_1569: Psest_1569 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,670,690 to 1,672,030 _1569 Psest_1570: Psest_1570 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,672,044 to 1,673,480 _1570 Psest_1571: Psest_1571 - cytochrome c oxidase accessory protein FixG, at 1,673,488 to 1,674,906 _1571 Position (kb) 1672 1673 1674Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1671.071 kb on + strand, within Psest_1569at 1671.072 kb on - strand, within Psest_1569at 1671.210 kb on - strand, within Psest_1569at 1671.443 kb on + strand, within Psest_1569at 1671.518 kb on + strand, within Psest_1569at 1671.535 kb on + strand, within Psest_1569at 1671.536 kb on - strand, within Psest_1569at 1671.647 kb on + strand, within Psest_1569at 1671.647 kb on + strand, within Psest_1569at 1671.647 kb on + strand, within Psest_1569at 1671.647 kb on + strand, within Psest_1569at 1671.648 kb on - strand, within Psest_1569at 1671.648 kb on - strand, within Psest_1569at 1671.648 kb on - strand, within Psest_1569at 1671.687 kb on - strand, within Psest_1569at 1671.795 kb on + strand, within Psest_1569at 1671.795 kb on + strand, within Psest_1569at 1671.796 kb on - strand, within Psest_1569at 1671.983 kb on + strandat 1671.983 kb on + strandat 1672.136 kb on + strandat 1672.347 kb on + strand, within Psest_1570at 1672.347 kb on + strand, within Psest_1570at 1672.348 kb on - strand, within Psest_1570at 1672.348 kb on - strand, within Psest_1570at 1672.348 kb on - strand, within Psest_1570at 1672.466 kb on - strand, within Psest_1570at 1672.591 kb on + strand, within Psest_1570at 1672.591 kb on + strand, within Psest_1570at 1672.592 kb on - strand, within Psest_1570at 1672.592 kb on - strand, within Psest_1570at 1672.592 kb on - strand, within Psest_1570at 1672.652 kb on - strand, within Psest_1570at 1672.652 kb on - strand, within Psest_1570at 1672.652 kb on - strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.843 kb on + strand, within Psest_1570at 1672.844 kb on - strand, within Psest_1570at 1672.844 kb on - strand, within Psest_1570at 1672.975 kb on + strand, within Psest_1570at 1672.975 kb on + strand, within Psest_1570at 1672.976 kb on - strand, within Psest_1570at 1672.976 kb on - strand, within Psest_1570at 1672.976 kb on - strand, within Psest_1570at 1673.307 kb on + strand, within Psest_1570at 1673.308 kb on - strand, within Psest_1570at 1673.308 kb on - strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.311 kb on + strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.312 kb on - strand, within Psest_1570at 1673.315 kb on - strand, within Psest_1570at 1673.315 kb on - strand, within Psest_1570at 1673.347 kb on + strandat 1673.733 kb on + strand, within Psest_1571at 1673.734 kb on - strand, within Psest_1571at 1673.753 kb on + strand, within Psest_1571at 1673.753 kb on + strand, within Psest_1571at 1673.754 kb on - strand, within Psest_1571at 1673.754 kb on - strand, within Psest_1571at 1673.948 kb on + strand, within Psest_1571at 1674.173 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.234 kb on + strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.235 kb on - strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.275 kb on + strand, within Psest_1571at 1674.276 kb on - strand, within Psest_1571at 1674.276 kb on - strand, within Psest_1571at 1674.276 kb on - strand, within Psest_1571

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.00390625 mg/ml
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1,671,071 + Psest_1569 0.28 -0.0
1,671,072 - Psest_1569 0.28 -0.5
1,671,210 - Psest_1569 0.39 +0.7
1,671,443 + Psest_1569 0.56 +0.3
1,671,518 + Psest_1569 0.62 +1.0
1,671,535 + Psest_1569 0.63 -0.9
1,671,536 - Psest_1569 0.63 +0.4
1,671,647 + Psest_1569 0.71 +0.1
1,671,647 + Psest_1569 0.71 +1.6
1,671,647 + Psest_1569 0.71 -1.0
1,671,647 + Psest_1569 0.71 +2.4
1,671,648 - Psest_1569 0.71 +0.9
1,671,648 - Psest_1569 0.71 -0.2
1,671,648 - Psest_1569 0.71 +0.9
1,671,687 - Psest_1569 0.74 -0.3
1,671,795 + Psest_1569 0.82 -1.1
1,671,795 + Psest_1569 0.82 -0.5
1,671,796 - Psest_1569 0.82 +2.0
1,671,983 + -0.5
1,671,983 + -0.9
1,672,136 + -0.9
1,672,347 + Psest_1570 0.21 -0.1
1,672,347 + Psest_1570 0.21 -0.4
1,672,348 - Psest_1570 0.21 +0.0
1,672,348 - Psest_1570 0.21 -0.9
1,672,348 - Psest_1570 0.21 -0.6
1,672,466 - Psest_1570 0.29 -2.0
1,672,591 + Psest_1570 0.38 -0.9
1,672,591 + Psest_1570 0.38 -0.3
1,672,592 - Psest_1570 0.38 +1.0
1,672,592 - Psest_1570 0.38 +1.3
1,672,592 - Psest_1570 0.38 -0.9
1,672,652 - Psest_1570 0.42 +0.8
1,672,652 - Psest_1570 0.42 -1.0
1,672,652 - Psest_1570 0.42 +1.3
1,672,843 + Psest_1570 0.56 -1.0
1,672,843 + Psest_1570 0.56 -0.4
1,672,843 + Psest_1570 0.56 +0.6
1,672,843 + Psest_1570 0.56 +2.8
1,672,844 - Psest_1570 0.56 +1.0
1,672,844 - Psest_1570 0.56 -1.4
1,672,975 + Psest_1570 0.65 +2.3
1,672,975 + Psest_1570 0.65 -0.1
1,672,976 - Psest_1570 0.65 +0.7
1,672,976 - Psest_1570 0.65 +1.1
1,672,976 - Psest_1570 0.65 -1.7
1,673,307 + Psest_1570 0.88 -1.7
1,673,308 - Psest_1570 0.88 -0.3
1,673,308 - Psest_1570 0.88 -0.3
1,673,311 + Psest_1570 0.88 -0.6
1,673,311 + Psest_1570 0.88 -0.6
1,673,311 + Psest_1570 0.88 +0.4
1,673,311 + Psest_1570 0.88 -0.4
1,673,311 + Psest_1570 0.88 -0.9
1,673,312 - Psest_1570 0.88 +1.8
1,673,312 - Psest_1570 0.88 +1.4
1,673,312 - Psest_1570 0.88 -0.2
1,673,312 - Psest_1570 0.88 -0.7
1,673,312 - Psest_1570 0.88 -1.0
1,673,312 - Psest_1570 0.88 +3.0
1,673,312 - Psest_1570 0.88 -0.9
1,673,315 - Psest_1570 0.88 +1.4
1,673,315 - Psest_1570 0.88 +1.3
1,673,347 + -1.5
1,673,733 + Psest_1571 0.17 -0.0
1,673,734 - Psest_1571 0.17 -0.5
1,673,753 + Psest_1571 0.19 +0.2
1,673,753 + Psest_1571 0.19 +0.8
1,673,754 - Psest_1571 0.19 +1.0
1,673,754 - Psest_1571 0.19 -0.2
1,673,948 + Psest_1571 0.32 -0.1
1,674,173 + Psest_1571 0.48 +1.5
1,674,234 + Psest_1571 0.53 -1.2
1,674,234 + Psest_1571 0.53 +0.2
1,674,234 + Psest_1571 0.53 +3.6
1,674,234 + Psest_1571 0.53 -0.2
1,674,234 + Psest_1571 0.53 +0.6
1,674,234 + Psest_1571 0.53 +0.6
1,674,234 + Psest_1571 0.53 +2.2
1,674,234 + Psest_1571 0.53 -1.1
1,674,234 + Psest_1571 0.53 -1.3
1,674,234 + Psest_1571 0.53 -0.0
1,674,234 + Psest_1571 0.53 -0.5
1,674,234 + Psest_1571 0.53 -0.5
1,674,234 + Psest_1571 0.53 +0.0
1,674,234 + Psest_1571 0.53 +0.4
1,674,234 + Psest_1571 0.53 +0.7
1,674,234 + Psest_1571 0.53 +1.6
1,674,235 - Psest_1571 0.53 +1.6
1,674,235 - Psest_1571 0.53 -0.9
1,674,235 - Psest_1571 0.53 +1.1
1,674,235 - Psest_1571 0.53 +0.1
1,674,235 - Psest_1571 0.53 -1.1
1,674,235 - Psest_1571 0.53 -1.9
1,674,235 - Psest_1571 0.53 -1.6
1,674,235 - Psest_1571 0.53 -1.1
1,674,235 - Psest_1571 0.53 +2.0
1,674,235 - Psest_1571 0.53 -1.3
1,674,235 - Psest_1571 0.53 +0.9
1,674,235 - Psest_1571 0.53 -0.0
1,674,235 - Psest_1571 0.53 +1.1
1,674,235 - Psest_1571 0.53 -1.3
1,674,235 - Psest_1571 0.53 +2.6
1,674,235 - Psest_1571 0.53 -1.4
1,674,235 - Psest_1571 0.53 -0.2
1,674,235 - Psest_1571 0.53 -1.2
1,674,235 - Psest_1571 0.53 -0.9
1,674,235 - Psest_1571 0.53 +0.3
1,674,235 - Psest_1571 0.53 +0.1
1,674,235 - Psest_1571 0.53 +0.6
1,674,235 - Psest_1571 0.53 +0.1
1,674,235 - Psest_1571 0.53 +0.0
1,674,235 - Psest_1571 0.53 +1.2
1,674,235 - Psest_1571 0.53 +0.1
1,674,235 - Psest_1571 0.53 +0.3
1,674,235 - Psest_1571 0.53 +0.2
1,674,235 - Psest_1571 0.53 +0.1
1,674,235 - Psest_1571 0.53 +1.3
1,674,235 - Psest_1571 0.53 +0.8
1,674,235 - Psest_1571 0.53 -1.3
1,674,275 + Psest_1571 0.55 -1.6
1,674,275 + Psest_1571 0.55 -0.5
1,674,275 + Psest_1571 0.55 +0.4
1,674,275 + Psest_1571 0.55 +0.3
1,674,276 - Psest_1571 0.56 -1.0
1,674,276 - Psest_1571 0.56 -1.1
1,674,276 - Psest_1571 0.56 +0.1

Or see this region's nucleotide sequence