Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0353

Experiment: Spectinomycin 0.00625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0352 and Psest_0353 are separated by 19 nucleotidesPsest_0353 and Psest_0354 are separated by 199 nucleotides Psest_0352: Psest_0352 - hypothetical protein, at 376,031 to 377,200 _0352 Psest_0353: Psest_0353 - Methyl-accepting chemotaxis protein, at 377,220 to 378,842 _0353 Psest_0354: Psest_0354 - Malate synthase G (EC 2.3.3.9) (from data), at 379,042 to 381,222 _0354 Position (kb) 377 378 379Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 376.230 kb on + strand, within Psest_0352at 376.230 kb on + strand, within Psest_0352at 376.231 kb on - strand, within Psest_0352at 376.231 kb on - strand, within Psest_0352at 376.231 kb on - strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.287 kb on + strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.288 kb on - strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.335 kb on + strand, within Psest_0352at 376.336 kb on - strand, within Psest_0352at 376.419 kb on + strand, within Psest_0352at 376.419 kb on + strand, within Psest_0352at 376.420 kb on - strand, within Psest_0352at 376.425 kb on + strand, within Psest_0352at 376.456 kb on + strand, within Psest_0352at 376.456 kb on + strand, within Psest_0352at 376.457 kb on - strand, within Psest_0352at 376.457 kb on - strand, within Psest_0352at 376.554 kb on + strand, within Psest_0352at 376.555 kb on - strand, within Psest_0352at 376.555 kb on - strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.650 kb on + strand, within Psest_0352at 376.651 kb on - strand, within Psest_0352at 376.651 kb on - strand, within Psest_0352at 376.653 kb on + strand, within Psest_0352at 376.653 kb on + strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.654 kb on - strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.722 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.743 kb on + strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.744 kb on - strand, within Psest_0352at 376.768 kb on - strand, within Psest_0352at 376.768 kb on - strand, within Psest_0352at 376.797 kb on + strand, within Psest_0352at 376.798 kb on - strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.827 kb on + strand, within Psest_0352at 376.828 kb on - strand, within Psest_0352at 376.828 kb on - strand, within Psest_0352at 376.828 kb on - strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.833 kb on + strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.834 kb on - strand, within Psest_0352at 376.984 kb on - strand, within Psest_0352at 377.055 kb on + strand, within Psest_0352at 377.055 kb on + strand, within Psest_0352at 377.055 kb on + strand, within Psest_0352at 377.056 kb on - strand, within Psest_0352at 377.056 kb on - strand, within Psest_0352at 377.056 kb on - strand, within Psest_0352at 377.215 kb on - strandat 377.524 kb on - strand, within Psest_0353at 377.524 kb on - strand, within Psest_0353at 377.724 kb on + strand, within Psest_0353at 377.766 kb on - strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.004 kb on + strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.005 kb on - strand, within Psest_0353at 378.340 kb on + strand, within Psest_0353at 378.341 kb on - strand, within Psest_0353at 378.341 kb on - strand, within Psest_0353at 378.482 kb on - strand, within Psest_0353at 378.758 kb on + strandat 378.758 kb on + strandat 378.759 kb on - strandat 378.759 kb on - strandat 378.769 kb on + strandat 378.769 kb on + strandat 378.770 kb on - strandat 378.793 kb on - strandat 378.954 kb on + strandat 378.955 kb on - strandat 378.955 kb on - strandat 378.996 kb on - strandat 379.011 kb on + strandat 379.044 kb on - strandat 379.311 kb on + strand, within Psest_0354at 379.311 kb on + strand, within Psest_0354at 379.312 kb on - strand, within Psest_0354at 379.404 kb on - strand, within Psest_0354at 379.404 kb on - strand, within Psest_0354at 379.404 kb on - strand, within Psest_0354at 379.404 kb on - strand, within Psest_0354

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.00625 mg/ml
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376,230 + Psest_0352 0.17 +1.2
376,230 + Psest_0352 0.17 -0.7
376,231 - Psest_0352 0.17 -0.1
376,231 - Psest_0352 0.17 +0.6
376,231 - Psest_0352 0.17 +0.7
376,287 + Psest_0352 0.22 +1.2
376,287 + Psest_0352 0.22 +0.1
376,287 + Psest_0352 0.22 -0.4
376,287 + Psest_0352 0.22 +3.9
376,287 + Psest_0352 0.22 -0.9
376,288 - Psest_0352 0.22 -1.8
376,288 - Psest_0352 0.22 +1.1
376,288 - Psest_0352 0.22 -0.7
376,288 - Psest_0352 0.22 +1.9
376,288 - Psest_0352 0.22 +0.6
376,288 - Psest_0352 0.22 -1.5
376,288 - Psest_0352 0.22 +0.1
376,288 - Psest_0352 0.22 -0.3
376,288 - Psest_0352 0.22 +0.8
376,288 - Psest_0352 0.22 +0.1
376,288 - Psest_0352 0.22 +1.5
376,335 + Psest_0352 0.26 -0.1
376,335 + Psest_0352 0.26 -1.3
376,335 + Psest_0352 0.26 -1.5
376,335 + Psest_0352 0.26 -0.9
376,335 + Psest_0352 0.26 -0.9
376,336 - Psest_0352 0.26 -1.7
376,419 + Psest_0352 0.33 +2.3
376,419 + Psest_0352 0.33 +0.5
376,420 - Psest_0352 0.33 -0.2
376,425 + Psest_0352 0.34 -0.6
376,456 + Psest_0352 0.36 +0.3
376,456 + Psest_0352 0.36 +0.2
376,457 - Psest_0352 0.36 -1.7
376,457 - Psest_0352 0.36 -0.2
376,554 + Psest_0352 0.45 +0.7
376,555 - Psest_0352 0.45 -1.8
376,555 - Psest_0352 0.45 +1.1
376,650 + Psest_0352 0.53 -1.3
376,650 + Psest_0352 0.53 -2.0
376,650 + Psest_0352 0.53 +0.6
376,650 + Psest_0352 0.53 +0.8
376,651 - Psest_0352 0.53 +1.1
376,651 - Psest_0352 0.53 +1.2
376,653 + Psest_0352 0.53 -2.3
376,653 + Psest_0352 0.53 -0.6
376,654 - Psest_0352 0.53 +0.3
376,654 - Psest_0352 0.53 -0.7
376,654 - Psest_0352 0.53 -0.7
376,654 - Psest_0352 0.53 +1.0
376,654 - Psest_0352 0.53 -0.5
376,654 - Psest_0352 0.53 -2.0
376,654 - Psest_0352 0.53 +2.1
376,722 + Psest_0352 0.59 -0.8
376,722 + Psest_0352 0.59 +2.5
376,722 + Psest_0352 0.59 +0.6
376,722 + Psest_0352 0.59 -3.2
376,743 + Psest_0352 0.61 +1.0
376,743 + Psest_0352 0.61 +1.7
376,743 + Psest_0352 0.61 +0.3
376,743 + Psest_0352 0.61 -1.5
376,743 + Psest_0352 0.61 -0.3
376,744 - Psest_0352 0.61 +0.2
376,744 - Psest_0352 0.61 +0.6
376,744 - Psest_0352 0.61 +1.5
376,744 - Psest_0352 0.61 -0.7
376,744 - Psest_0352 0.61 -1.0
376,768 - Psest_0352 0.63 +2.0
376,768 - Psest_0352 0.63 +0.2
376,797 + Psest_0352 0.65 -1.3
376,798 - Psest_0352 0.66 +0.5
376,827 + Psest_0352 0.68 -1.5
376,827 + Psest_0352 0.68 +1.2
376,827 + Psest_0352 0.68 +2.1
376,827 + Psest_0352 0.68 +3.9
376,827 + Psest_0352 0.68 -0.4
376,827 + Psest_0352 0.68 +0.9
376,827 + Psest_0352 0.68 +1.3
376,828 - Psest_0352 0.68 +0.7
376,828 - Psest_0352 0.68 +0.3
376,828 - Psest_0352 0.68 -2.9
376,833 + Psest_0352 0.69 +0.1
376,833 + Psest_0352 0.69 -1.1
376,833 + Psest_0352 0.69 -1.5
376,833 + Psest_0352 0.69 +1.2
376,833 + Psest_0352 0.69 +2.5
376,833 + Psest_0352 0.69 -0.5
376,833 + Psest_0352 0.69 -0.6
376,833 + Psest_0352 0.69 -0.4
376,834 - Psest_0352 0.69 +0.1
376,834 - Psest_0352 0.69 +0.6
376,834 - Psest_0352 0.69 -1.0
376,834 - Psest_0352 0.69 -0.1
376,834 - Psest_0352 0.69 +0.9
376,834 - Psest_0352 0.69 -0.1
376,834 - Psest_0352 0.69 -1.6
376,834 - Psest_0352 0.69 -0.2
376,984 - Psest_0352 0.81 -0.1
377,055 + Psest_0352 0.88 -0.8
377,055 + Psest_0352 0.88 +1.6
377,055 + Psest_0352 0.88 +0.7
377,056 - Psest_0352 0.88 +1.0
377,056 - Psest_0352 0.88 -0.5
377,056 - Psest_0352 0.88 -0.4
377,215 - -2.2
377,524 - Psest_0353 0.19 +3.1
377,524 - Psest_0353 0.19 +0.6
377,724 + Psest_0353 0.31 -0.8
377,766 - Psest_0353 0.34 +1.7
378,004 + Psest_0353 0.48 +1.5
378,004 + Psest_0353 0.48 +2.5
378,004 + Psest_0353 0.48 +0.7
378,004 + Psest_0353 0.48 -0.1
378,004 + Psest_0353 0.48 +0.2
378,005 - Psest_0353 0.48 +3.0
378,005 - Psest_0353 0.48 -1.0
378,005 - Psest_0353 0.48 -0.2
378,005 - Psest_0353 0.48 +1.0
378,005 - Psest_0353 0.48 -1.4
378,340 + Psest_0353 0.69 -0.3
378,341 - Psest_0353 0.69 -0.1
378,341 - Psest_0353 0.69 -0.2
378,482 - Psest_0353 0.78 +1.5
378,758 + -0.9
378,758 + -2.8
378,759 - +0.2
378,759 - +0.2
378,769 + -0.3
378,769 + -0.2
378,770 - +1.0
378,793 - +0.9
378,954 + +0.9
378,955 - -2.0
378,955 - -1.9
378,996 - -3.2
379,011 + -0.7
379,044 - +0.2
379,311 + Psest_0354 0.12 +0.2
379,311 + Psest_0354 0.12 +0.7
379,312 - Psest_0354 0.12 -0.7
379,404 - Psest_0354 0.17 +0.1
379,404 - Psest_0354 0.17 +0.3
379,404 - Psest_0354 0.17 -1.7
379,404 - Psest_0354 0.17 -0.8

Or see this region's nucleotide sequence