Experiment: Benzethonium chloride 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3025 and Psest_3026 overlap by 4 nucleotides Psest_3026 and Psest_3027 are separated by 328 nucleotides Psest_3027 and Psest_3028 are separated by 78 nucleotides Psest_3028 and Psest_3029 are separated by 58 nucleotides
Psest_3025: Psest_3025 - Cytochrome bd-type quinol oxidase, subunit 1, at 3,211,952 to 3,213,592
_3025
Psest_3026: Psest_3026 - hypothetical protein, at 3,213,589 to 3,213,768
_3026
Psest_3027: Psest_3027 - AZL_007950 family protein, at 3,214,097 to 3,214,681
_3027
Psest_3028: Psest_3028 - Protein of unknown function (DUF2946)., at 3,214,760 to 3,215,125
_3028
Psest_3029: Psest_3029 - 3-methyladenine DNA glycosylase, at 3,215,184 to 3,215,855
_3029
Position (kb)
3214
3215 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3213.327 kb on + strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.337 kb on - strand, within Psest_3025 at 3213.339 kb on + strand, within Psest_3025 at 3213.339 kb on + strand, within Psest_3025 at 3213.443 kb on - strand at 3213.444 kb on + strand at 3213.444 kb on + strand at 3213.444 kb on + strand at 3213.444 kb on + strand at 3213.445 kb on - strand at 3213.445 kb on - strand at 3213.445 kb on - strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.468 kb on + strand at 3213.469 kb on - strand at 3213.469 kb on - strand at 3213.469 kb on - strand at 3213.469 kb on - strand at 3213.534 kb on + strand at 3213.535 kb on - strand at 3213.535 kb on - strand at 3213.535 kb on - strand at 3213.535 kb on - strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.572 kb on + strand at 3213.625 kb on - strand, within Psest_3026 at 3213.772 kb on + strand at 3213.773 kb on - strand at 3214.029 kb on + strand at 3214.029 kb on + strand at 3214.029 kb on + strand at 3214.030 kb on - strand at 3214.277 kb on + strand, within Psest_3027 at 3214.277 kb on + strand, within Psest_3027 at 3214.277 kb on + strand, within Psest_3027 at 3214.278 kb on - strand, within Psest_3027 at 3214.283 kb on + strand, within Psest_3027 at 3214.284 kb on - strand, within Psest_3027 at 3214.441 kb on - strand, within Psest_3027 at 3214.534 kb on - strand, within Psest_3027 at 3214.976 kb on - strand, within Psest_3028 at 3215.090 kb on + strand at 3215.090 kb on + strand at 3215.091 kb on - strand at 3215.091 kb on - strand at 3215.091 kb on - strand at 3215.136 kb on + strand at 3215.137 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM remove 3,213,327 + Psest_3025 0.84 -2.1 3,213,337 - Psest_3025 0.84 -1.5 3,213,337 - Psest_3025 0.84 -2.5 3,213,337 - Psest_3025 0.84 -1.2 3,213,337 - Psest_3025 0.84 +0.1 3,213,339 + Psest_3025 0.85 -0.5 3,213,339 + Psest_3025 0.85 -0.1 3,213,443 - -0.7 3,213,444 + -0.8 3,213,444 + -0.4 3,213,444 + -1.4 3,213,444 + +0.8 3,213,445 - -2.1 3,213,445 - -1.1 3,213,445 - -1.0 3,213,468 + -2.8 3,213,468 + -1.4 3,213,468 + +0.2 3,213,468 + -2.7 3,213,468 + -1.5 3,213,468 + -1.3 3,213,469 - -0.7 3,213,469 - -1.0 3,213,469 - -1.5 3,213,469 - -0.6 3,213,534 + -2.8 3,213,535 - -4.1 3,213,535 - -2.2 3,213,535 - -0.6 3,213,535 - -1.4 3,213,572 + -0.3 3,213,572 + +0.8 3,213,572 + -1.4 3,213,572 + -1.6 3,213,572 + -1.0 3,213,572 + -0.3 3,213,625 - Psest_3026 0.20 -0.5 3,213,772 + -1.7 3,213,773 - -2.4 3,214,029 + +0.6 3,214,029 + +0.0 3,214,029 + -1.5 3,214,030 - +0.1 3,214,277 + Psest_3027 0.31 -3.2 3,214,277 + Psest_3027 0.31 -1.5 3,214,277 + Psest_3027 0.31 +0.3 3,214,278 - Psest_3027 0.31 -1.7 3,214,283 + Psest_3027 0.32 -0.4 3,214,284 - Psest_3027 0.32 -0.6 3,214,441 - Psest_3027 0.59 -0.7 3,214,534 - Psest_3027 0.75 -1.0 3,214,976 - Psest_3028 0.59 -1.5 3,215,090 + -0.2 3,215,090 + -1.5 3,215,091 - +0.1 3,215,091 - -1.5 3,215,091 - +0.3 3,215,136 + +1.1 3,215,137 - +0.9
Or see this region's nucleotide sequence