Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3027

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3025 and Psest_3026 overlap by 4 nucleotidesPsest_3026 and Psest_3027 are separated by 328 nucleotidesPsest_3027 and Psest_3028 are separated by 78 nucleotidesPsest_3028 and Psest_3029 are separated by 58 nucleotides Psest_3025: Psest_3025 - Cytochrome bd-type quinol oxidase, subunit 1, at 3,211,952 to 3,213,592 _3025 Psest_3026: Psest_3026 - hypothetical protein, at 3,213,589 to 3,213,768 _3026 Psest_3027: Psest_3027 - AZL_007950 family protein, at 3,214,097 to 3,214,681 _3027 Psest_3028: Psest_3028 - Protein of unknown function (DUF2946)., at 3,214,760 to 3,215,125 _3028 Psest_3029: Psest_3029 - 3-methyladenine DNA glycosylase, at 3,215,184 to 3,215,855 _3029 Position (kb) 3214 3215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3213.327 kb on + strand, within Psest_3025at 3213.337 kb on - strand, within Psest_3025at 3213.337 kb on - strand, within Psest_3025at 3213.337 kb on - strand, within Psest_3025at 3213.337 kb on - strand, within Psest_3025at 3213.339 kb on + strand, within Psest_3025at 3213.339 kb on + strand, within Psest_3025at 3213.443 kb on - strandat 3213.444 kb on + strandat 3213.444 kb on + strandat 3213.444 kb on + strandat 3213.444 kb on + strandat 3213.445 kb on - strandat 3213.445 kb on - strandat 3213.445 kb on - strandat 3213.468 kb on + strandat 3213.468 kb on + strandat 3213.468 kb on + strandat 3213.468 kb on + strandat 3213.468 kb on + strandat 3213.468 kb on + strandat 3213.469 kb on - strandat 3213.469 kb on - strandat 3213.469 kb on - strandat 3213.469 kb on - strandat 3213.534 kb on + strandat 3213.535 kb on - strandat 3213.535 kb on - strandat 3213.535 kb on - strandat 3213.535 kb on - strandat 3213.572 kb on + strandat 3213.572 kb on + strandat 3213.572 kb on + strandat 3213.572 kb on + strandat 3213.572 kb on + strandat 3213.572 kb on + strandat 3213.625 kb on - strand, within Psest_3026at 3213.772 kb on + strandat 3213.773 kb on - strandat 3214.029 kb on + strandat 3214.029 kb on + strandat 3214.029 kb on + strandat 3214.030 kb on - strandat 3214.277 kb on + strand, within Psest_3027at 3214.277 kb on + strand, within Psest_3027at 3214.277 kb on + strand, within Psest_3027at 3214.278 kb on - strand, within Psest_3027at 3214.283 kb on + strand, within Psest_3027at 3214.284 kb on - strand, within Psest_3027at 3214.441 kb on - strand, within Psest_3027at 3214.534 kb on - strand, within Psest_3027at 3214.976 kb on - strand, within Psest_3028at 3215.090 kb on + strandat 3215.090 kb on + strandat 3215.091 kb on - strandat 3215.091 kb on - strandat 3215.091 kb on - strandat 3215.136 kb on + strandat 3215.137 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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3,213,327 + Psest_3025 0.84 -2.1
3,213,337 - Psest_3025 0.84 -1.5
3,213,337 - Psest_3025 0.84 -2.5
3,213,337 - Psest_3025 0.84 -1.2
3,213,337 - Psest_3025 0.84 +0.1
3,213,339 + Psest_3025 0.85 -0.5
3,213,339 + Psest_3025 0.85 -0.1
3,213,443 - -0.7
3,213,444 + -0.8
3,213,444 + -0.4
3,213,444 + -1.4
3,213,444 + +0.8
3,213,445 - -2.1
3,213,445 - -1.1
3,213,445 - -1.0
3,213,468 + -2.8
3,213,468 + -1.4
3,213,468 + +0.2
3,213,468 + -2.7
3,213,468 + -1.5
3,213,468 + -1.3
3,213,469 - -0.7
3,213,469 - -1.0
3,213,469 - -1.5
3,213,469 - -0.6
3,213,534 + -2.8
3,213,535 - -4.1
3,213,535 - -2.2
3,213,535 - -0.6
3,213,535 - -1.4
3,213,572 + -0.3
3,213,572 + +0.8
3,213,572 + -1.4
3,213,572 + -1.6
3,213,572 + -1.0
3,213,572 + -0.3
3,213,625 - Psest_3026 0.20 -0.5
3,213,772 + -1.7
3,213,773 - -2.4
3,214,029 + +0.6
3,214,029 + +0.0
3,214,029 + -1.5
3,214,030 - +0.1
3,214,277 + Psest_3027 0.31 -3.2
3,214,277 + Psest_3027 0.31 -1.5
3,214,277 + Psest_3027 0.31 +0.3
3,214,278 - Psest_3027 0.31 -1.7
3,214,283 + Psest_3027 0.32 -0.4
3,214,284 - Psest_3027 0.32 -0.6
3,214,441 - Psest_3027 0.59 -0.7
3,214,534 - Psest_3027 0.75 -1.0
3,214,976 - Psest_3028 0.59 -1.5
3,215,090 + -0.2
3,215,090 + -1.5
3,215,091 - +0.1
3,215,091 - -1.5
3,215,091 - +0.3
3,215,136 + +1.1
3,215,137 - +0.9

Or see this region's nucleotide sequence