Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1480

Experiment: Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1478 and Psest_1479 overlap by 8 nucleotidesPsest_1479 and Psest_1480 overlap by 4 nucleotidesPsest_1480 and Psest_1481 are separated by 126 nucleotides Psest_1478: Psest_1478 - Predicted membrane protein, at 1,583,093 to 1,583,503 _1478 Psest_1479: Psest_1479 - NAD(P)H:quinone oxidoreductase, type IV, at 1,583,496 to 1,584,101 _1479 Psest_1480: Psest_1480 - arsenate reductase (glutaredoxin), at 1,584,098 to 1,584,484 _1480 Psest_1481: Psest_1481 - Predicted membrane protein, at 1,584,611 to 1,585,843 _1481 Position (kb) 1584 1585Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.197 kb on - strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.257 kb on + strand, within Psest_1478at 1583.378 kb on + strand, within Psest_1478at 1583.488 kb on + strandat 1583.489 kb on - strandat 1583.667 kb on - strand, within Psest_1479at 1583.667 kb on - strand, within Psest_1479at 1583.669 kb on - strand, within Psest_1479at 1583.833 kb on + strand, within Psest_1479at 1583.833 kb on + strand, within Psest_1479at 1583.833 kb on + strand, within Psest_1479at 1583.834 kb on - strand, within Psest_1479at 1583.834 kb on - strand, within Psest_1479at 1583.834 kb on - strand, within Psest_1479at 1583.921 kb on - strand, within Psest_1479at 1584.070 kb on + strandat 1584.071 kb on - strandat 1584.073 kb on + strandat 1584.073 kb on + strandat 1584.073 kb on + strandat 1584.073 kb on + strandat 1584.074 kb on - strandat 1584.074 kb on - strandat 1584.074 kb on - strandat 1584.074 kb on - strandat 1584.074 kb on - strandat 1584.088 kb on + strandat 1584.088 kb on + strandat 1584.089 kb on - strandat 1584.089 kb on - strandat 1584.089 kb on - strandat 1584.089 kb on - strandat 1584.089 kb on - strandat 1584.089 kb on - strandat 1584.256 kb on - strand, within Psest_1480at 1584.256 kb on - strand, within Psest_1480at 1584.439 kb on + strand, within Psest_1480at 1584.440 kb on - strand, within Psest_1480at 1584.455 kb on + strandat 1584.455 kb on + strandat 1584.456 kb on - strandat 1584.456 kb on - strandat 1584.456 kb on - strandat 1584.456 kb on - strandat 1584.456 kb on - strandat 1584.456 kb on - strandat 1584.456 kb on - strandat 1584.487 kb on + strandat 1584.556 kb on + strandat 1584.556 kb on + strandat 1584.556 kb on + strandat 1584.556 kb on + strandat 1584.556 kb on + strandat 1584.557 kb on - strandat 1584.557 kb on - strandat 1584.557 kb on - strandat 1584.565 kb on - strandat 1584.707 kb on + strandat 1584.806 kb on + strand, within Psest_1481at 1584.807 kb on - strand, within Psest_1481at 1584.807 kb on - strand, within Psest_1481at 1584.807 kb on - strand, within Psest_1481at 1584.807 kb on - strand, within Psest_1481at 1584.807 kb on - strand, within Psest_1481at 1584.807 kb on - strand, within Psest_1481at 1584.808 kb on + strand, within Psest_1481at 1584.809 kb on - strand, within Psest_1481at 1584.854 kb on + strand, within Psest_1481at 1584.854 kb on + strand, within Psest_1481at 1584.854 kb on + strand, within Psest_1481at 1584.855 kb on - strand, within Psest_1481at 1584.964 kb on + strand, within Psest_1481at 1584.964 kb on + strand, within Psest_1481at 1584.965 kb on - strand, within Psest_1481at 1584.965 kb on - strand, within Psest_1481at 1585.013 kb on + strand, within Psest_1481at 1585.013 kb on + strand, within Psest_1481at 1585.014 kb on - strand, within Psest_1481at 1585.014 kb on - strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.073 kb on + strand, within Psest_1481at 1585.074 kb on - strand, within Psest_1481at 1585.074 kb on - strand, within Psest_1481at 1585.074 kb on - strand, within Psest_1481at 1585.074 kb on - strand, within Psest_1481at 1585.074 kb on - strand, within Psest_1481at 1585.074 kb on - strand, within Psest_1481at 1585.074 kb on - strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.181 kb on + strand, within Psest_1481at 1585.182 kb on - strand, within Psest_1481at 1585.182 kb on - strand, within Psest_1481at 1585.182 kb on - strand, within Psest_1481at 1585.283 kb on + strand, within Psest_1481at 1585.283 kb on + strand, within Psest_1481at 1585.283 kb on + strand, within Psest_1481at 1585.283 kb on + strand, within Psest_1481at 1585.283 kb on + strand, within Psest_1481at 1585.283 kb on + strand, within Psest_1481at 1585.283 kb on + strand, within Psest_1481at 1585.284 kb on - strand, within Psest_1481at 1585.284 kb on - strand, within Psest_1481at 1585.284 kb on - strand, within Psest_1481at 1585.284 kb on - strand, within Psest_1481at 1585.284 kb on - strand, within Psest_1481at 1585.293 kb on - strand, within Psest_1481at 1585.316 kb on + strand, within Psest_1481at 1585.358 kb on + strand, within Psest_1481at 1585.358 kb on + strand, within Psest_1481at 1585.358 kb on + strand, within Psest_1481at 1585.358 kb on + strand, within Psest_1481at 1585.358 kb on + strand, within Psest_1481at 1585.359 kb on - strand, within Psest_1481at 1585.407 kb on + strand, within Psest_1481at 1585.429 kb on + strand, within Psest_1481

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.0125 mM
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1,583,142 + Psest_1478 0.12 -0.0
1,583,142 + Psest_1478 0.12 -0.2
1,583,142 + Psest_1478 0.12 -1.2
1,583,142 + Psest_1478 0.12 +0.1
1,583,142 + Psest_1478 0.12 -1.8
1,583,142 + Psest_1478 0.12 -2.0
1,583,143 - Psest_1478 0.12 -2.4
1,583,143 - Psest_1478 0.12 -0.5
1,583,143 - Psest_1478 0.12 -0.2
1,583,143 - Psest_1478 0.12 +0.2
1,583,143 - Psest_1478 0.12 -0.5
1,583,143 - Psest_1478 0.12 -0.2
1,583,143 - Psest_1478 0.12 +3.1
1,583,143 - Psest_1478 0.12 -0.6
1,583,143 - Psest_1478 0.12 -0.4
1,583,196 + Psest_1478 0.25 -3.1
1,583,196 + Psest_1478 0.25 -1.2
1,583,196 + Psest_1478 0.25 +0.1
1,583,196 + Psest_1478 0.25 -0.9
1,583,197 - Psest_1478 0.25 +0.6
1,583,244 + Psest_1478 0.37 +0.5
1,583,244 + Psest_1478 0.37 +0.9
1,583,244 + Psest_1478 0.37 +0.1
1,583,244 + Psest_1478 0.37 -1.6
1,583,257 + Psest_1478 0.40 +0.9
1,583,378 + Psest_1478 0.69 -0.6
1,583,488 + +1.6
1,583,489 - +1.0
1,583,667 - Psest_1479 0.28 +2.1
1,583,667 - Psest_1479 0.28 +1.9
1,583,669 - Psest_1479 0.29 -0.8
1,583,833 + Psest_1479 0.56 -0.5
1,583,833 + Psest_1479 0.56 -0.1
1,583,833 + Psest_1479 0.56 -1.3
1,583,834 - Psest_1479 0.56 +2.0
1,583,834 - Psest_1479 0.56 -1.7
1,583,834 - Psest_1479 0.56 +1.8
1,583,921 - Psest_1479 0.70 +0.3
1,584,070 + +1.0
1,584,071 - -0.2
1,584,073 + +0.6
1,584,073 + +1.4
1,584,073 + -1.2
1,584,073 + -0.8
1,584,074 - +0.8
1,584,074 - +1.8
1,584,074 - -1.7
1,584,074 - -1.0
1,584,074 - -1.4
1,584,088 + -0.3
1,584,088 + -1.4
1,584,089 - -1.2
1,584,089 - +1.3
1,584,089 - -0.5
1,584,089 - -0.5
1,584,089 - -0.8
1,584,089 - -0.6
1,584,256 - Psest_1480 0.41 -2.5
1,584,256 - Psest_1480 0.41 -0.2
1,584,439 + Psest_1480 0.88 -0.8
1,584,440 - Psest_1480 0.88 +0.1
1,584,455 + +0.5
1,584,455 + +0.1
1,584,456 - -1.1
1,584,456 - -0.2
1,584,456 - +1.0
1,584,456 - -0.9
1,584,456 - +3.6
1,584,456 - -0.1
1,584,456 - +0.8
1,584,487 + -2.2
1,584,556 + +1.4
1,584,556 + -0.5
1,584,556 + -0.6
1,584,556 + -0.6
1,584,556 + +0.1
1,584,557 - -0.3
1,584,557 - -0.3
1,584,557 - -0.5
1,584,565 - -1.7
1,584,707 + -0.9
1,584,806 + Psest_1481 0.16 -1.2
1,584,807 - Psest_1481 0.16 -2.0
1,584,807 - Psest_1481 0.16 +0.5
1,584,807 - Psest_1481 0.16 +0.2
1,584,807 - Psest_1481 0.16 -1.3
1,584,807 - Psest_1481 0.16 +2.4
1,584,807 - Psest_1481 0.16 -2.4
1,584,808 + Psest_1481 0.16 +0.3
1,584,809 - Psest_1481 0.16 +0.6
1,584,854 + Psest_1481 0.20 -2.6
1,584,854 + Psest_1481 0.20 +0.6
1,584,854 + Psest_1481 0.20 -1.8
1,584,855 - Psest_1481 0.20 +0.2
1,584,964 + Psest_1481 0.29 +0.1
1,584,964 + Psest_1481 0.29 -0.2
1,584,965 - Psest_1481 0.29 +0.5
1,584,965 - Psest_1481 0.29 +1.3
1,585,013 + Psest_1481 0.33 +0.7
1,585,013 + Psest_1481 0.33 -1.1
1,585,014 - Psest_1481 0.33 +1.2
1,585,014 - Psest_1481 0.33 +0.8
1,585,073 + Psest_1481 0.37 -0.9
1,585,073 + Psest_1481 0.37 +0.6
1,585,073 + Psest_1481 0.37 +1.2
1,585,073 + Psest_1481 0.37 +1.9
1,585,073 + Psest_1481 0.37 +0.6
1,585,073 + Psest_1481 0.37 +1.6
1,585,073 + Psest_1481 0.37 +1.6
1,585,073 + Psest_1481 0.37 +0.3
1,585,073 + Psest_1481 0.37 +1.1
1,585,073 + Psest_1481 0.37 -0.2
1,585,073 + Psest_1481 0.37 -0.5
1,585,074 - Psest_1481 0.38 +1.0
1,585,074 - Psest_1481 0.38 +1.3
1,585,074 - Psest_1481 0.38 +1.0
1,585,074 - Psest_1481 0.38 -0.3
1,585,074 - Psest_1481 0.38 +1.4
1,585,074 - Psest_1481 0.38 +0.2
1,585,074 - Psest_1481 0.38 +3.0
1,585,181 + Psest_1481 0.46 -1.3
1,585,181 + Psest_1481 0.46 +0.2
1,585,181 + Psest_1481 0.46 +1.0
1,585,181 + Psest_1481 0.46 +0.8
1,585,181 + Psest_1481 0.46 +0.7
1,585,181 + Psest_1481 0.46 +1.4
1,585,181 + Psest_1481 0.46 -0.1
1,585,181 + Psest_1481 0.46 -1.4
1,585,181 + Psest_1481 0.46 -2.0
1,585,182 - Psest_1481 0.46 -0.9
1,585,182 - Psest_1481 0.46 +1.5
1,585,182 - Psest_1481 0.46 -1.4
1,585,283 + Psest_1481 0.55 -1.8
1,585,283 + Psest_1481 0.55 +0.3
1,585,283 + Psest_1481 0.55 +0.2
1,585,283 + Psest_1481 0.55 +2.6
1,585,283 + Psest_1481 0.55 -0.2
1,585,283 + Psest_1481 0.55 +1.7
1,585,283 + Psest_1481 0.55 +2.5
1,585,284 - Psest_1481 0.55 +2.2
1,585,284 - Psest_1481 0.55 -1.0
1,585,284 - Psest_1481 0.55 +1.5
1,585,284 - Psest_1481 0.55 +1.4
1,585,284 - Psest_1481 0.55 +0.5
1,585,293 - Psest_1481 0.55 -0.9
1,585,316 + Psest_1481 0.57 -2.1
1,585,358 + Psest_1481 0.61 -1.8
1,585,358 + Psest_1481 0.61 -1.0
1,585,358 + Psest_1481 0.61 +0.7
1,585,358 + Psest_1481 0.61 -1.9
1,585,358 + Psest_1481 0.61 +0.9
1,585,359 - Psest_1481 0.61 +1.3
1,585,407 + Psest_1481 0.65 +0.9
1,585,429 + Psest_1481 0.66 -0.9

Or see this region's nucleotide sequence