Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0048

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0047 and Psest_0048 are separated by 407 nucleotidesPsest_0048 and Psest_0049 are separated by 186 nucleotidesPsest_0049 and Psest_0050 are separated by 155 nucleotides Psest_0047: Psest_0047 - Predicted esterase of the alpha-beta hydrolase superfamily, at 49,298 to 50,521 _0047 Psest_0048: Psest_0048 - ABC-type multidrug transport system, ATPase and permease components, at 50,929 to 52,764 _0048 Psest_0049: Psest_0049 - Uncharacterized conserved protein, at 52,951 to 53,556 _0049 Psest_0050: Psest_0050 - Predicted acetyltransferase, at 53,712 to 53,993 _0050 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 49.958 kb on + strand, within Psest_0047at 49.958 kb on + strand, within Psest_0047at 50.028 kb on + strand, within Psest_0047at 50.028 kb on + strand, within Psest_0047at 50.028 kb on + strand, within Psest_0047at 50.029 kb on - strand, within Psest_0047at 50.029 kb on - strand, within Psest_0047at 50.029 kb on - strand, within Psest_0047at 50.029 kb on - strand, within Psest_0047at 50.505 kb on - strandat 50.541 kb on + strandat 50.541 kb on + strandat 50.541 kb on + strandat 50.627 kb on - strandat 50.627 kb on - strandat 50.639 kb on + strandat 50.639 kb on + strandat 50.639 kb on + strandat 50.640 kb on - strandat 50.732 kb on - strandat 50.855 kb on - strandat 50.887 kb on - strandat 51.013 kb on + strandat 51.013 kb on + strandat 51.013 kb on + strandat 51.013 kb on + strandat 51.013 kb on + strandat 51.014 kb on - strandat 51.014 kb on - strandat 51.022 kb on + strandat 51.022 kb on + strandat 51.023 kb on - strandat 51.023 kb on - strandat 51.304 kb on + strand, within Psest_0048at 51.304 kb on + strand, within Psest_0048at 51.305 kb on - strand, within Psest_0048at 51.439 kb on + strand, within Psest_0048at 51.439 kb on + strand, within Psest_0048at 51.439 kb on + strand, within Psest_0048at 51.440 kb on - strand, within Psest_0048at 51.440 kb on - strand, within Psest_0048at 51.457 kb on + strand, within Psest_0048at 51.457 kb on + strand, within Psest_0048at 51.457 kb on + strand, within Psest_0048at 51.457 kb on + strand, within Psest_0048at 51.458 kb on - strand, within Psest_0048at 51.458 kb on - strand, within Psest_0048at 51.458 kb on - strand, within Psest_0048at 51.458 kb on - strand, within Psest_0048at 51.458 kb on - strand, within Psest_0048at 51.517 kb on + strand, within Psest_0048at 51.670 kb on + strand, within Psest_0048at 52.350 kb on + strand, within Psest_0048at 52.714 kb on + strandat 52.714 kb on + strandat 52.715 kb on - strandat 52.715 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.814 kb on - strandat 52.866 kb on + strandat 52.866 kb on + strandat 52.866 kb on + strandat 52.867 kb on - strandat 52.867 kb on - strandat 52.979 kb on + strandat 52.980 kb on - strandat 52.980 kb on - strandat 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.031 kb on + strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.032 kb on - strand, within Psest_0049at 53.054 kb on + strand, within Psest_0049at 53.054 kb on + strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.055 kb on - strand, within Psest_0049at 53.108 kb on + strand, within Psest_0049at 53.108 kb on + strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.109 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.113 kb on - strand, within Psest_0049at 53.131 kb on + strand, within Psest_0049at 53.131 kb on + strand, within Psest_0049at 53.131 kb on + strand, within Psest_0049at 53.132 kb on - strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.147 kb on + strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.148 kb on - strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.149 kb on + strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.150 kb on - strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.211 kb on + strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.212 kb on - strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.284 kb on + strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.285 kb on - strand, within Psest_0049at 53.286 kb on + strand, within Psest_0049at 53.286 kb on + strand, within Psest_0049at 53.286 kb on + strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.287 kb on - strand, within Psest_0049at 53.361 kb on + strand, within Psest_0049at 53.362 kb on - strand, within Psest_0049at 53.362 kb on - strand, within Psest_0049at 53.596 kb on - strandat 53.659 kb on + strandat 53.659 kb on + strandat 53.659 kb on + strandat 53.660 kb on - strandat 53.660 kb on - strandat 53.676 kb on + strandat 53.676 kb on + strandat 53.676 kb on + strandat 53.677 kb on - strandat 53.761 kb on - strand, within Psest_0050

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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49,958 + Psest_0047 0.54 +0.6
49,958 + Psest_0047 0.54 +0.6
50,028 + Psest_0047 0.60 -0.0
50,028 + Psest_0047 0.60 -0.4
50,028 + Psest_0047 0.60 +0.1
50,029 - Psest_0047 0.60 -0.1
50,029 - Psest_0047 0.60 -1.2
50,029 - Psest_0047 0.60 -0.3
50,029 - Psest_0047 0.60 +0.5
50,505 - +1.8
50,541 + +1.5
50,541 + -1.3
50,541 + +0.6
50,627 - -1.5
50,627 - -0.0
50,639 + -0.7
50,639 + -2.1
50,639 + +0.2
50,640 - -1.6
50,732 - +0.2
50,855 - -0.1
50,887 - -0.9
51,013 + +0.6
51,013 + -0.9
51,013 + +1.6
51,013 + +1.5
51,013 + -0.0
51,014 - +0.5
51,014 - -1.5
51,022 + -0.8
51,022 + -0.3
51,023 - +0.7
51,023 - -1.5
51,304 + Psest_0048 0.20 +1.0
51,304 + Psest_0048 0.20 +1.2
51,305 - Psest_0048 0.20 -2.8
51,439 + Psest_0048 0.28 +2.6
51,439 + Psest_0048 0.28 +1.8
51,439 + Psest_0048 0.28 -0.7
51,440 - Psest_0048 0.28 -0.4
51,440 - Psest_0048 0.28 -1.3
51,457 + Psest_0048 0.29 -1.4
51,457 + Psest_0048 0.29 -1.2
51,457 + Psest_0048 0.29 +1.3
51,457 + Psest_0048 0.29 +0.4
51,458 - Psest_0048 0.29 +1.8
51,458 - Psest_0048 0.29 -0.9
51,458 - Psest_0048 0.29 -1.4
51,458 - Psest_0048 0.29 +2.6
51,458 - Psest_0048 0.29 -1.3
51,517 + Psest_0048 0.32 +3.7
51,670 + Psest_0048 0.40 -0.6
52,350 + Psest_0048 0.77 +4.8
52,714 + +0.6
52,714 + +1.8
52,715 - -0.4
52,715 - +0.9
52,814 - -0.1
52,814 - -0.7
52,814 - +0.1
52,814 - +2.9
52,814 - +0.4
52,866 + +0.1
52,866 + -0.4
52,866 + +2.4
52,867 - +1.2
52,867 - -2.8
52,979 + -0.2
52,980 - -1.8
52,980 - -0.5
53,031 + Psest_0049 0.13 +1.3
53,031 + Psest_0049 0.13 +1.4
53,031 + Psest_0049 0.13 -0.2
53,031 + Psest_0049 0.13 -1.5
53,031 + Psest_0049 0.13 +0.8
53,032 - Psest_0049 0.13 -0.8
53,032 - Psest_0049 0.13 +0.3
53,032 - Psest_0049 0.13 +1.0
53,032 - Psest_0049 0.13 -0.4
53,032 - Psest_0049 0.13 +0.5
53,032 - Psest_0049 0.13 -0.1
53,032 - Psest_0049 0.13 -0.0
53,032 - Psest_0049 0.13 -0.4
53,032 - Psest_0049 0.13 +0.4
53,032 - Psest_0049 0.13 +1.1
53,032 - Psest_0049 0.13 -0.0
53,032 - Psest_0049 0.13 +2.0
53,032 - Psest_0049 0.13 -0.1
53,032 - Psest_0049 0.13 +0.1
53,054 + Psest_0049 0.17 +0.0
53,054 + Psest_0049 0.17 -0.9
53,055 - Psest_0049 0.17 +0.5
53,055 - Psest_0049 0.17 +0.0
53,055 - Psest_0049 0.17 -0.3
53,055 - Psest_0049 0.17 -1.3
53,055 - Psest_0049 0.17 +2.7
53,055 - Psest_0049 0.17 -0.6
53,108 + Psest_0049 0.26 -0.3
53,108 + Psest_0049 0.26 -0.2
53,109 - Psest_0049 0.26 -0.0
53,109 - Psest_0049 0.26 -0.4
53,109 - Psest_0049 0.26 +1.7
53,109 - Psest_0049 0.26 -0.3
53,113 - Psest_0049 0.27 +2.2
53,113 - Psest_0049 0.27 -0.6
53,113 - Psest_0049 0.27 -0.6
53,113 - Psest_0049 0.27 -0.5
53,131 + Psest_0049 0.30 +1.4
53,131 + Psest_0049 0.30 +3.8
53,131 + Psest_0049 0.30 -0.7
53,132 - Psest_0049 0.30 +0.9
53,147 + Psest_0049 0.32 +0.1
53,147 + Psest_0049 0.32 -0.8
53,147 + Psest_0049 0.32 +1.4
53,147 + Psest_0049 0.32 +2.5
53,147 + Psest_0049 0.32 +0.7
53,147 + Psest_0049 0.32 -1.1
53,147 + Psest_0049 0.32 +1.6
53,147 + Psest_0049 0.32 -1.2
53,147 + Psest_0049 0.32 -0.9
53,147 + Psest_0049 0.32 -0.5
53,147 + Psest_0049 0.32 +1.7
53,147 + Psest_0049 0.32 -0.7
53,147 + Psest_0049 0.32 -1.6
53,147 + Psest_0049 0.32 -0.0
53,147 + Psest_0049 0.32 +0.6
53,147 + Psest_0049 0.32 +0.4
53,148 - Psest_0049 0.33 +0.0
53,148 - Psest_0049 0.33 -1.7
53,148 - Psest_0049 0.33 +1.6
53,148 - Psest_0049 0.33 -1.1
53,148 - Psest_0049 0.33 +1.2
53,148 - Psest_0049 0.33 -1.3
53,148 - Psest_0049 0.33 -0.9
53,148 - Psest_0049 0.33 -0.6
53,148 - Psest_0049 0.33 -1.2
53,148 - Psest_0049 0.33 -1.2
53,148 - Psest_0049 0.33 -0.8
53,148 - Psest_0049 0.33 +2.9
53,149 + Psest_0049 0.33 -0.1
53,149 + Psest_0049 0.33 -1.7
53,149 + Psest_0049 0.33 +1.5
53,149 + Psest_0049 0.33 +2.3
53,149 + Psest_0049 0.33 +1.9
53,149 + Psest_0049 0.33 +0.8
53,149 + Psest_0049 0.33 -0.6
53,149 + Psest_0049 0.33 -0.3
53,149 + Psest_0049 0.33 +0.3
53,149 + Psest_0049 0.33 -1.8
53,149 + Psest_0049 0.33 +0.7
53,149 + Psest_0049 0.33 +0.4
53,149 + Psest_0049 0.33 +1.2
53,149 + Psest_0049 0.33 -0.0
53,149 + Psest_0049 0.33 -0.8
53,150 - Psest_0049 0.33 -0.3
53,150 - Psest_0049 0.33 +2.0
53,150 - Psest_0049 0.33 -1.1
53,150 - Psest_0049 0.33 +0.5
53,150 - Psest_0049 0.33 -0.7
53,211 + Psest_0049 0.43 -0.6
53,211 + Psest_0049 0.43 -0.8
53,211 + Psest_0049 0.43 +1.9
53,211 + Psest_0049 0.43 -0.4
53,211 + Psest_0049 0.43 +1.4
53,212 - Psest_0049 0.43 -0.0
53,212 - Psest_0049 0.43 -1.3
53,212 - Psest_0049 0.43 +0.7
53,212 - Psest_0049 0.43 -0.5
53,212 - Psest_0049 0.43 -0.3
53,212 - Psest_0049 0.43 -1.3
53,212 - Psest_0049 0.43 -0.8
53,212 - Psest_0049 0.43 -0.0
53,212 - Psest_0049 0.43 +0.8
53,212 - Psest_0049 0.43 +1.6
53,284 + Psest_0049 0.55 +0.1
53,284 + Psest_0049 0.55 -0.1
53,284 + Psest_0049 0.55 -2.3
53,284 + Psest_0049 0.55 +2.8
53,284 + Psest_0049 0.55 -1.1
53,284 + Psest_0049 0.55 -1.6
53,284 + Psest_0049 0.55 +1.1
53,284 + Psest_0049 0.55 +1.6
53,284 + Psest_0049 0.55 -0.6
53,284 + Psest_0049 0.55 -0.5
53,285 - Psest_0049 0.55 +1.2
53,285 - Psest_0049 0.55 +0.6
53,285 - Psest_0049 0.55 +1.2
53,285 - Psest_0049 0.55 +0.9
53,285 - Psest_0049 0.55 +1.4
53,285 - Psest_0049 0.55 +0.6
53,285 - Psest_0049 0.55 +0.1
53,285 - Psest_0049 0.55 -2.6
53,285 - Psest_0049 0.55 +1.9
53,285 - Psest_0049 0.55 +0.4
53,285 - Psest_0049 0.55 -0.6
53,285 - Psest_0049 0.55 +1.5
53,285 - Psest_0049 0.55 -0.1
53,286 + Psest_0049 0.55 -0.5
53,286 + Psest_0049 0.55 +3.2
53,286 + Psest_0049 0.55 -0.6
53,287 - Psest_0049 0.55 +0.7
53,287 - Psest_0049 0.55 +1.7
53,287 - Psest_0049 0.55 -0.6
53,287 - Psest_0049 0.55 -0.3
53,287 - Psest_0049 0.55 +0.6
53,361 + Psest_0049 0.68 +0.9
53,362 - Psest_0049 0.68 -0.4
53,362 - Psest_0049 0.68 +0.3
53,596 - -1.6
53,659 + +0.2
53,659 + -1.0
53,659 + -0.9
53,660 - -1.0
53,660 - -1.0
53,676 + +0.9
53,676 + -1.9
53,676 + +0.1
53,677 - -1.9
53,761 - Psest_0050 0.17 +1.8

Or see this region's nucleotide sequence