Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2537

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2536 and Psest_2537 are separated by 205 nucleotidesPsest_2537 and Psest_2538 are separated by 106 nucleotidesPsest_2538 and Psest_2539 are separated by 24 nucleotides Psest_2536: Psest_2536 - NAD+ synthetase, at 2,716,576 to 2,717,403 _2536 Psest_2537: Psest_2537 - oxygen-independent coproporphyrinogen III oxidase, at 2,717,609 to 2,718,991 _2537 Psest_2538: Psest_2538 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 2,719,098 to 2,719,832 _2538 Psest_2539: Psest_2539 - adenine phosphoribosyltransferase, at 2,719,857 to 2,720,405 _2539 Position (kb) 2717 2718 2719Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2717.423 kb on - strandat 2717.573 kb on - strandat 2717.674 kb on + strandat 2717.674 kb on + strandat 2717.674 kb on + strandat 2717.674 kb on + strandat 2717.674 kb on + strandat 2717.674 kb on + strandat 2717.674 kb on + strandat 2717.675 kb on - strandat 2717.675 kb on - strandat 2717.675 kb on - strandat 2717.777 kb on + strand, within Psest_2537at 2717.810 kb on + strand, within Psest_2537at 2717.814 kb on - strand, within Psest_2537at 2717.938 kb on - strand, within Psest_2537at 2717.938 kb on - strand, within Psest_2537at 2718.153 kb on + strand, within Psest_2537at 2718.154 kb on - strand, within Psest_2537at 2718.154 kb on - strand, within Psest_2537at 2718.254 kb on + strand, within Psest_2537at 2718.254 kb on + strand, within Psest_2537at 2718.254 kb on + strand, within Psest_2537at 2718.254 kb on + strand, within Psest_2537at 2718.254 kb on + strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.255 kb on - strand, within Psest_2537at 2718.345 kb on - strand, within Psest_2537at 2718.345 kb on - strand, within Psest_2537at 2718.345 kb on - strand, within Psest_2537at 2718.384 kb on + strand, within Psest_2537at 2718.385 kb on - strand, within Psest_2537at 2718.385 kb on - strand, within Psest_2537at 2718.421 kb on - strand, within Psest_2537at 2718.421 kb on - strand, within Psest_2537at 2718.421 kb on - strand, within Psest_2537at 2718.470 kb on + strand, within Psest_2537at 2718.626 kb on + strand, within Psest_2537at 2718.648 kb on + strand, within Psest_2537at 2718.816 kb on - strand, within Psest_2537at 2718.816 kb on - strand, within Psest_2537at 2718.947 kb on + strandat 2718.948 kb on - strandat 2718.962 kb on - strandat 2718.989 kb on + strandat 2719.028 kb on - strandat 2719.058 kb on + strandat 2719.072 kb on - strandat 2719.097 kb on + strandat 2719.097 kb on + strandat 2719.097 kb on + strandat 2719.097 kb on + strandat 2719.097 kb on + strandat 2719.097 kb on + strandat 2719.097 kb on + strandat 2719.098 kb on - strandat 2719.098 kb on - strandat 2719.098 kb on - strandat 2719.098 kb on - strandat 2719.098 kb on - strandat 2719.098 kb on - strandat 2719.098 kb on - strandat 2719.256 kb on - strand, within Psest_2538at 2719.313 kb on + strand, within Psest_2538at 2719.774 kb on + strandat 2719.775 kb on - strandat 2719.892 kb on - strandat 2719.940 kb on - strand, within Psest_2539

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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2,717,423 - +0.0
2,717,573 - +1.8
2,717,674 + -0.2
2,717,674 + +1.6
2,717,674 + -0.8
2,717,674 + -0.5
2,717,674 + +1.1
2,717,674 + +2.2
2,717,674 + -1.6
2,717,675 - -0.3
2,717,675 - -0.3
2,717,675 - +0.6
2,717,777 + Psest_2537 0.12 +3.3
2,717,810 + Psest_2537 0.15 -0.1
2,717,814 - Psest_2537 0.15 -0.1
2,717,938 - Psest_2537 0.24 -0.1
2,717,938 - Psest_2537 0.24 +0.8
2,718,153 + Psest_2537 0.39 -0.4
2,718,154 - Psest_2537 0.39 +1.6
2,718,154 - Psest_2537 0.39 +0.7
2,718,254 + Psest_2537 0.47 +2.4
2,718,254 + Psest_2537 0.47 -0.6
2,718,254 + Psest_2537 0.47 +1.9
2,718,254 + Psest_2537 0.47 +1.8
2,718,254 + Psest_2537 0.47 -0.9
2,718,255 - Psest_2537 0.47 +2.4
2,718,255 - Psest_2537 0.47 +1.5
2,718,255 - Psest_2537 0.47 -1.2
2,718,255 - Psest_2537 0.47 +1.4
2,718,255 - Psest_2537 0.47 -0.5
2,718,255 - Psest_2537 0.47 -2.1
2,718,255 - Psest_2537 0.47 -0.7
2,718,255 - Psest_2537 0.47 -0.6
2,718,255 - Psest_2537 0.47 -0.5
2,718,255 - Psest_2537 0.47 +1.4
2,718,345 - Psest_2537 0.53 -1.8
2,718,345 - Psest_2537 0.53 +0.6
2,718,345 - Psest_2537 0.53 -0.2
2,718,384 + Psest_2537 0.56 -1.6
2,718,385 - Psest_2537 0.56 +1.9
2,718,385 - Psest_2537 0.56 +2.4
2,718,421 - Psest_2537 0.59 +0.1
2,718,421 - Psest_2537 0.59 +0.6
2,718,421 - Psest_2537 0.59 +1.2
2,718,470 + Psest_2537 0.62 +2.8
2,718,626 + Psest_2537 0.74 -1.9
2,718,648 + Psest_2537 0.75 -1.7
2,718,816 - Psest_2537 0.87 +0.4
2,718,816 - Psest_2537 0.87 -0.8
2,718,947 + +0.1
2,718,948 - +0.3
2,718,962 - +0.1
2,718,989 + -1.2
2,719,028 - -0.7
2,719,058 + +0.0
2,719,072 - -1.2
2,719,097 + -0.5
2,719,097 + +0.2
2,719,097 + +0.3
2,719,097 + -2.4
2,719,097 + +2.2
2,719,097 + -1.6
2,719,097 + +1.1
2,719,098 - -0.6
2,719,098 - -0.5
2,719,098 - +0.1
2,719,098 - -0.3
2,719,098 - +3.3
2,719,098 - -0.7
2,719,098 - +1.5
2,719,256 - Psest_2538 0.21 +1.4
2,719,313 + Psest_2538 0.29 -2.5
2,719,774 + -2.5
2,719,775 - -2.1
2,719,892 - -0.6
2,719,940 - Psest_2539 0.15 -0.5

Or see this region's nucleotide sequence