Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2109

Experiment: Benzethonium chloride 0.01 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2107 and Psest_2108 are separated by 222 nucleotidesPsest_2108 and Psest_2109 are separated by 105 nucleotidesPsest_2109 and Psest_2110 are separated by 100 nucleotidesPsest_2110 and Psest_2111 are separated by 142 nucleotides Psest_2107: Psest_2107 - Topoisomerase IB, at 2,237,436 to 2,238,380 _2107 Psest_2108: Psest_2108 - hypothetical protein, at 2,238,603 to 2,238,767 _2108 Psest_2109: Psest_2109 - Predicted membrane protein, at 2,238,873 to 2,239,565 _2109 Psest_2110: Psest_2110 - hypothetical protein, at 2,239,666 to 2,239,947 _2110 Psest_2111: Psest_2111 - hypothetical protein, at 2,240,090 to 2,240,359 _2111 Position (kb) 2238 2239 2240Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2237.888 kb on + strand, within Psest_2107at 2237.889 kb on - strand, within Psest_2107at 2237.963 kb on + strand, within Psest_2107at 2237.983 kb on + strand, within Psest_2107at 2237.984 kb on - strand, within Psest_2107at 2237.984 kb on - strand, within Psest_2107at 2238.157 kb on + strand, within Psest_2107at 2238.157 kb on + strand, within Psest_2107at 2238.157 kb on + strand, within Psest_2107at 2238.270 kb on + strand, within Psest_2107at 2238.271 kb on - strand, within Psest_2107at 2238.271 kb on - strand, within Psest_2107at 2238.271 kb on - strand, within Psest_2107at 2238.271 kb on - strand, within Psest_2107at 2238.280 kb on + strand, within Psest_2107at 2238.291 kb on + strandat 2238.358 kb on + strandat 2238.358 kb on + strandat 2238.358 kb on + strandat 2238.359 kb on - strandat 2238.359 kb on - strandat 2238.415 kb on + strandat 2238.415 kb on + strandat 2238.416 kb on - strandat 2238.416 kb on - strandat 2238.416 kb on - strandat 2238.416 kb on - strandat 2238.562 kb on - strandat 2238.604 kb on + strandat 2238.604 kb on + strandat 2238.608 kb on + strandat 2238.832 kb on - strandat 2238.864 kb on + strandat 2238.871 kb on + strandat 2238.871 kb on + strandat 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.988 kb on + strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2238.989 kb on - strand, within Psest_2109at 2239.027 kb on + strand, within Psest_2109at 2239.047 kb on + strand, within Psest_2109at 2239.047 kb on + strand, within Psest_2109at 2239.048 kb on - strand, within Psest_2109at 2239.048 kb on - strand, within Psest_2109at 2239.048 kb on - strand, within Psest_2109at 2239.213 kb on + strand, within Psest_2109at 2239.213 kb on + strand, within Psest_2109at 2239.213 kb on + strand, within Psest_2109at 2239.214 kb on - strand, within Psest_2109at 2239.214 kb on - strand, within Psest_2109at 2239.214 kb on - strand, within Psest_2109at 2239.214 kb on - strand, within Psest_2109at 2239.361 kb on - strand, within Psest_2109at 2239.628 kb on + strandat 2239.629 kb on - strandat 2239.629 kb on - strandat 2239.681 kb on + strandat 2239.682 kb on - strandat 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.770 kb on - strand, within Psest_2110at 2239.770 kb on - strand, within Psest_2110at 2239.770 kb on - strand, within Psest_2110at 2239.928 kb on + strandat 2239.929 kb on - strandat 2240.022 kb on - strandat 2240.022 kb on - strandat 2240.390 kb on + strandat 2240.422 kb on - strandat 2240.422 kb on - strandat 2240.422 kb on - strandat 2240.548 kb on + strandat 2240.549 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.01 mM
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2,237,888 + Psest_2107 0.48 -1.4
2,237,889 - Psest_2107 0.48 -2.0
2,237,963 + Psest_2107 0.56 -1.8
2,237,983 + Psest_2107 0.58 +0.8
2,237,984 - Psest_2107 0.58 +0.1
2,237,984 - Psest_2107 0.58 -0.4
2,238,157 + Psest_2107 0.76 -0.5
2,238,157 + Psest_2107 0.76 -0.9
2,238,157 + Psest_2107 0.76 +0.0
2,238,270 + Psest_2107 0.88 -0.9
2,238,271 - Psest_2107 0.88 +1.9
2,238,271 - Psest_2107 0.88 -0.0
2,238,271 - Psest_2107 0.88 -0.5
2,238,271 - Psest_2107 0.88 -1.1
2,238,280 + Psest_2107 0.89 -0.5
2,238,291 + -0.9
2,238,358 + +0.4
2,238,358 + -1.2
2,238,358 + +1.0
2,238,359 - -1.9
2,238,359 - -2.3
2,238,415 + -0.5
2,238,415 + +0.8
2,238,416 - +0.7
2,238,416 - -0.2
2,238,416 - +3.3
2,238,416 - +0.4
2,238,562 - +2.2
2,238,604 + -1.1
2,238,604 + +0.7
2,238,608 + +0.9
2,238,832 - -0.2
2,238,864 + +1.7
2,238,871 + +0.9
2,238,871 + -0.7
2,238,988 + Psest_2109 0.17 -0.6
2,238,988 + Psest_2109 0.17 +1.4
2,238,988 + Psest_2109 0.17 -1.1
2,238,988 + Psest_2109 0.17 -0.8
2,238,988 + Psest_2109 0.17 -0.4
2,238,988 + Psest_2109 0.17 -1.1
2,238,988 + Psest_2109 0.17 -1.1
2,238,988 + Psest_2109 0.17 -1.6
2,238,988 + Psest_2109 0.17 +0.4
2,238,989 - Psest_2109 0.17 +0.3
2,238,989 - Psest_2109 0.17 -1.3
2,238,989 - Psest_2109 0.17 +1.7
2,238,989 - Psest_2109 0.17 +0.8
2,238,989 - Psest_2109 0.17 +0.3
2,238,989 - Psest_2109 0.17 +0.3
2,238,989 - Psest_2109 0.17 -0.4
2,238,989 - Psest_2109 0.17 +0.4
2,238,989 - Psest_2109 0.17 -0.2
2,238,989 - Psest_2109 0.17 +1.2
2,238,989 - Psest_2109 0.17 -1.1
2,238,989 - Psest_2109 0.17 -0.3
2,239,027 + Psest_2109 0.22 -0.8
2,239,047 + Psest_2109 0.25 -0.9
2,239,047 + Psest_2109 0.25 -2.1
2,239,048 - Psest_2109 0.25 -2.4
2,239,048 - Psest_2109 0.25 -0.9
2,239,048 - Psest_2109 0.25 +0.1
2,239,213 + Psest_2109 0.49 +0.3
2,239,213 + Psest_2109 0.49 -3.6
2,239,213 + Psest_2109 0.49 +0.1
2,239,214 - Psest_2109 0.49 +2.3
2,239,214 - Psest_2109 0.49 -0.4
2,239,214 - Psest_2109 0.49 +1.3
2,239,214 - Psest_2109 0.49 -2.8
2,239,361 - Psest_2109 0.70 -0.6
2,239,628 + -0.5
2,239,629 - +0.5
2,239,629 - -1.1
2,239,681 + -0.5
2,239,682 - -0.7
2,239,769 + Psest_2110 0.37 +3.2
2,239,769 + Psest_2110 0.37 -0.4
2,239,769 + Psest_2110 0.37 +1.1
2,239,769 + Psest_2110 0.37 -1.1
2,239,769 + Psest_2110 0.37 -1.3
2,239,769 + Psest_2110 0.37 +2.0
2,239,769 + Psest_2110 0.37 -0.4
2,239,770 - Psest_2110 0.37 +1.4
2,239,770 - Psest_2110 0.37 -1.7
2,239,770 - Psest_2110 0.37 -0.2
2,239,928 + -1.0
2,239,929 - -0.3
2,240,022 - +0.2
2,240,022 - -0.4
2,240,390 + -0.1
2,240,422 - +0.4
2,240,422 - -1.1
2,240,422 - +0.7
2,240,548 + -2.5
2,240,549 - +1.9

Or see this region's nucleotide sequence